LOC110525116 (adamtsl2)


Basic Information

Item Value
gene id LOC110525116
gene name adamtsl2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20958755 ~ 20984618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980155.1
ATGCGGATCTGGTCGTGGGAACAATGTGGGGAGACTAGCCTGGTGCTACTGGGGTTCCTCACCCTGGGATTGTCTGTAGGGAACCTCTCAACCAGGGGACAGGAGGATGGGGGAGCCTCCAACAGTCTGGAGGATGAGCTGGAGTCCACCACATACTGGTGGGGGGAGTGGGCCAAGTGGACCGCCTGCACGCGTACCTGTGGAGGTGGGGTCATGTCCCAGGAGAGGCACTGTCTCAAACAGAGAAAGAAAGCAGTCGCTGGTAGAGACAACATGACCTGCACTGGCACTTCGAAAAAATACCTCCTCTGTAACACCAAGGACTGCCCTTCCTCTGGGAGAAGCTTCAGGGAAGAGCAGTGCTGGTCGTTCAACTCACAGGTCTACAATGGCAGGAACTACCACTGGAAACCCCTGTATCCGGatgACTATGTCCATATCTCCAGTAACCCATGTGACCTGCACTGCACCACAGCCGACGGCCAGAGACAGCTGATGGTTCCTGCCCGAGACGGAACATCCTGCAAGTACAGCAACTACAGAGGGGTCTGTGTGGACGGCAGATGTGAGCCAATCGGGTGTGATGGAGTGCTCTTCTCGCCCAATACACTGGATACGTGTGGAGTGTGTCAGGGGGATGGCAGCAGCTGCAGCAGGGTCAATGGAAACTTCCGCCGCGAGGCCACCAGTTTGGGTTACTCCTTTATCACAACAATCCCTGAGGGTTCCTGGGACATCCAGATCATTGAGAGGAAGAAGTCAGCTGATGTTTTGGCTGTGACTGATCAGGCGGGGAACTTCTTTTTCAATGGAAACTACAAGGTGGACAGCCCCCAGAACTTCCATGCAGCGGGTACCGTCTTCAAGTACCGGCGGCCCATGGATGTGTATGAGACGGGAATCGAGTACATCGTAGCCAAAGGGCCCATCAACCAGGCCATCAATGTTCTGGTGTGGAACCAGAATGGTCGTATCCCTTACATTACGTACGAGTACACCGTCCTACGGGAGTCCCTGTCCCCCATCCCTCAACCCCCTGTCTACACCGGCCCCAACAGCACCACCCCTGGGGTTTCCGTGGAAATGGGCAGTATGGTGGCCCCCAACGAGAGCATGTATGACAAGGCGATACCTGAGCCTCAGCAGAACCGTTTGTTGAAGAAGGGGGCCGAGATGGCAGGGGCCGAGGGCCAGGAGACCAATGAGGTGTATGAGGAGACAGCAGCCATTGACTGTGACCAGGACAGCCCAACCCTTCCACAATACACAGATGGCAACAGCAGTCACACAAGCAGTGTAGCAGTCCCTGCCCCGGCAGCCAGCAGGCCTTTAGAGGAGGTGCCAGACCCAGAGAACCTCATCTGGAGAGTCTTGCTGGGCGAGCGGATTGGTCCAGATGTGGGAGAGGGACTGTTCTCGTCAGAGGTGGGGCCATTGGAGGTAGACCATAGCAGTGTGAAGTTCCCCCTCAAAAGCTCACTGGGGGAGTTCAGTCTGGCCCGGCGGAGGAATGATTCTGGAGACCTGCTGTTCCCCAACAGGACGTTGCTGACAGGGATGAGGAGCAACAACCGTACCAACAGAACCAGGACTAATCGCCTGGGACGTTGCTGTAATGCTGTGTTTGACAGGACCAATCATCTGAGAccttgttgtcatgttgtgtttgacATAACCATTCGTGTGAGAccttgttgtcatgttgtgtttgacATAACCATTCGTGTGAGAccttgttgtcatgttgtgtttgacATAACCATTCGTGTGAGAccttgttgtcatgttgtgtttgacATAACCATTCCTGTGAGAccttgttgtcatgttgtgtttgacAGGACCATTCAGAGGTTCCTGCAGAAGAACTTCAAGCTGAGCCCTGCAGACATGTACCGCTGGAAACTGTCTTCTCAGGAACCCTGCACCTCCACCTGCTCTatagGAGTGTCAAAGTCCTTTGCCATGTGTGTGCGCTACGATGGAGCTGAGGTAGATGACATGCAGTGTGACAATATGACCCGACCTGAGCCTGTTCATGACTTCTGCATTGGGAGGGAGTGCCAGCCCAGGTGGGAGGCCAGCAGTTGGAGTGAATGTTCTCGTACTTGTGGTGAGGGCTTCCAGTTCCGTCTGGTGCGCTGCTGGAAGATGCTGTCCCCCGGGCTGGACAGCTCTGTGTACAGTGATCTCTGCACCGTGGCAGAACTGGAGAGGCCCCTGGAGCGCCGTGCCTGTAAGAGCCCCACCTGTGGCCCCCAATGGGAGGTGGCCGAGTGGACTGAGtGTCCAGCCAAGTGTGGCCACAGGGCCCAGGTGACCCGGGAGGTCAGGTGTTCAGACGAAACCAAGTTATGTGATCCCCCGACCCGCCCCCCTAACATTAAGAACTGCACAGGCTCGCCCTGCGAACGCCAGTGGACTGTGTCAGAGTGGGGGCCATGCTCGGGGTTGTGCGGCCAGGGGAAGATGGTACGCCACGTGTACTGTAAGACACCAGAGGGCCGTGTGGTGCCTGAATCTCAGTGCTCTCCGGAGAATAAGCCCCTGGCCATCCATCCCTGTGGGGAGAAGGACTGTGCCCCACACTGGCTCACTCAGGACTGGGAGAGGTGTAACACGACATGTGGCCGCGGTGTGAAGCGGAGGATCGTGCAATGCGCCGGCATCACCGCTGGGAAGTTTCAGACCCATGACAACGAGGACTGTGGTGCCAGTGAGAGGCCAGAGGACGAGAACACCTGCTTTGAGAGGCCCTGTTTCAAGTGGTACACCACACCCTGGTCTGAGTGCACTAAGATGTGTGGTGTGGGTGTTAGGATGAGAGATGTAAAGTGCTACCAGGCTAGGGAGATCGTGAGAGGGTGTGACTCCCTGACCAAGCCTGTGGCCAAGCAGACCTGCGCCCTGCAACCCTGTCCCACTGAACCCCCAGATGAGAGCTGTCAGGACCGACCCACCACCAACTGCTCTCTAGCTCTGAAGGTGAACCTGTGCAGTCACTGGTACTACAGCAAGGCTTGCTGCCATTCCTGCAGGGCCCAGCACACCTCTTAGTATTGCCTGACACCCCCAAAGCCTTTCCCCCATAGTAGGCTACTCTACTTCACCACAGTAAGTtactctactacaccacactaggctactctactacactacagtagactACTCTACAGTAAATTACTCTACTACACCACAGTAGGTTACTCTACTTCACCACAGTACGTTCCCCACAGTAAGTTATTCTACTACACCACAGTAGACTACCCTACTTTACCACAGTAAGTtactctactacaccacactatgctactctactacaccacagtagggctactctactacaccacagtaggctactctactacaccacagtaggttactctactacaccacactaggcTACTCTACTGCACCCCAGtaggctactctactctaccacactagACTACTCTGCTACACCACACTaggctactctactacaccacactaggctactctactacaccacactaggcTACTCTAATACACCACACTaggctactctactacaccacagTAGGCTACTCTACTGAACCCTAGTAGGCTACTCTACTACATCACACTAGGCTACTCTACTACACCCCAGTAGGCTACTCTACTGCACCCCAGTaggctactctactacaccacactaggctactctactacaccacactaggcTACTCTACTACACCCCAGTAGGCTACTCTATTACACCACACTAGGCTTctctactacaccacactaggctactctactacaccacactaggcTACTCTACTGCACCACAGTAGGCTACTCTATTACACCACAGTaggctactctactacaccacactaggcttctctactacaccacactaggctactctactacaccacactaggcTACTCTACTGCACCCCAGTaggctactctactacaccacactaggcTACTCTATTACACCACGCTAGtctactctactacaccacagtaggctactctactacaccacactaggctactctac
>TU549738
cacACATCTCcacagcagcaccaccaccacaccacccacTCTGACCCGGCATCACACAACTCGGCAGCCCCTGGACTGCAGCTAGGATGCGGATCTGGTCGTGGGAACAATGTGGGGAGACTAGCCTGGTGCTACTGGGGTTCCTCACCCTGGGATTGTCTGTAGGGAACCTCTCAACCAGGGGACAGGAGGATGGGGGAGCCTCCAACAGTCTGGAGGATGAGCTGGAGTCCACCACATACTGGTGGGGGGAGTGGGCCAAGTGGACCGCCTGCACGCGTACCTGTGGAGGTGGGGTCATGTCCCAGGAGAGGCACTGTCTCAAACAGAGAAAGAAAGCAGTCGCTGGTAGAGACAACATGACCTGCACTGGCACTTCGAAAAAATACCTCCTCT

Function

symbol description
adamtsl2 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in geleophysic dysplasia 1. Orthologous to human ADAMTSL2 (ADAMTS like 2).

NR:

description
ADAMTS-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980155.1 False 4032 mRNA 0.54 18 20962300 20984618
TU549738 True 396 TUCP 0.59 4 20958755 20963326

Neighbor

gene id symbol gene type direction distance location
LOC110525115 ttc16 coding upstream 15358 20939811 ~ 20946942 (+)
LOC110525447 LOC106585394 coding upstream 95461 20850171 ~ 20866839 (+)
LOC118964873 NA coding upstream 126872 20834000 ~ 20835428 (+)
prlrb LOC106585301 coding upstream 182723 20755954 ~ 20779577 (+)
LOC110525442 LOC106585389 coding upstream 217322 20740426 ~ 20744978 (+)
LOC110525452 LOC106585404 coding downstream 26158 21010776 ~ 21014262 (+)
LOC110525453 LOC106580025 coding downstream 29771 21014389 ~ 21019612 (+)
cfap157 cfap157 coding downstream 58414 21043032 ~ 21056547 (+)
LOC110525457 LOC106585409 coding downstream 77820 21062438 ~ 21098568 (+)
ptgs1 LOC106585418 coding downstream 226956 21211574 ~ 21272145 (+)
G483721 LOC106585399 non-coding upstream 36255 20923166 ~ 20926045 (+)
G483690 LOC106585396 non-coding upstream 72566 20886907 ~ 20889734 (+)
G483593 NA non-coding upstream 255895 20620100 ~ 20706405 (+)
G483767 NA non-coding downstream 15960 21000578 ~ 21000911 (+)
G483778 NA non-coding downstream 40048 21024666 ~ 21025677 (+)
G483779 NA non-coding downstream 43226 21027844 ~ 21028186 (+)
G484479 LOC106585411 non-coding downstream 132934 21117552 ~ 21119475 (+)
G484499 NA non-coding downstream 156194 21140812 ~ 21141171 (+)
G483669 LOC106585393 other upstream 158494 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 359298 20591803 ~ 20603188 (+)
LOC110525429 NA other upstream 425202 20533279 ~ 20537508 (+)
G482551 LOC106585704 other upstream 1702692 19259149 ~ 19259608 (+)
G482000 NA other upstream 2104144 18857627 ~ 18858156 (+)
G484674 NA other downstream 479521 21464139 ~ 21466905 (+)
G484726 NA other downstream 569114 21553732 ~ 21554097 (+)
G485780 NA other downstream 1456698 22441316 ~ 22444619 (+)
G486127 NA other downstream 1689624 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 2206014 23079630 ~ 23197514 (+)
G483631 NA non-coding upstream 266396 20690848 ~ 20692359 (+)
G483596 NA non-coding upstream 322180 20635375 ~ 20636575 (+)

Expression


Co-expression Network