LOC110525013 (LOC106585433)


Basic Information

Item Value
gene id LOC110525013
gene name LOC106585433
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21741044 ~ 21744737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604974.2
AAGACAGACTCCAAATCAAGTGAGAAGAAAACAGGTAGGGGAATCATGATGCCAGAGGCACTAATTTGCAAATCATCTGACATTTAACTGTTTCAAAACTATAGCCATGTCTCTTCCTCTTATATTATTTTGTTATGCAGATAAGATATACTATCAGAAGCAGGTCAGCATGCTTCAAGTCATCCTCAAAGCATGAGAACACATCAATGCTTTCCATTGATCCACGGTAGGCTAGCAAAACTGTACATTCTATTAGAGACTAACATTAATCACACCAGATGAAAAGATAATAATGCTGGAGATGTACATTTGAGAAGGCCTATGCAAGTCTGGCCAGACACATGATGTAGTGTGAGATTGAAACTGGAACTGATACCATCACCTTTCCAGTTGTAACACAGTTACATGAAGATGTGTGATGTCGGTTCTTTCCGATGCGTTCAGGGTTCTTTATGATGAGTTCTTAGTATCCCATTGTAACAGGTCGGGGACAGTCAATGTGGACAAGTGGAGTCAAAGAGAGCTGTCTGAATGGGACATCAACAGGATCAGCAGTGGTGGCGGCAGGATTTTTTCACTGGGGTAGCTATGGGGTAGCTTGTTCACTGCATAGGGGTGGATTACATGCACACACGCGATCACGTCCGTGAGGTGAGGGAGAACGATGTCGACCTCGATCACCAAATATCTTCGAATATACATATGTACTCAACATGTCATTGAAAATCATGTTAGGGTTTGCAAGAAACCAACGGTTAACTCCCAAACAACAGCCCTCCATGACTCCAATGCCAATTAGCTTGGGTTCAATATTTTACAGCTAGTAGCCTACTGTTATAGCTATCGGAAACAACACAGCTATCTGCAAATCAGTGCAACAATTTTGAAACAATAGGAATCGGGTCGTAAAACAGATCAAtggtcagatacacacacatcCTGATTTAAACAAATTTAGCTAGCGATTTAAAAGATCTGACTCTGGATCAGGGGATAGCTACAGGCAAATTTGACATAGTTCAAAGACATATCAGTCAGATggatttttcaaccactcaaatTCAAGACATTCTGTCAGAGCCAATGAGGAGGCACGGTGTTATGTAGGCTGGACCCTGAGCAGTCAGAGCTCGTTTGTGAGAACAGGATTTTGAGAGACAGAAAAATGTAGACTCATTATATATATTGAAATTAAAACATTATTCATTTCTTTCTTGGGGGTGCTAGGCCTATTTTTGACGGCACTTCAGCACTGTCTTGCCCCGGCCCAAAGCCTCCACTGAGGATCAGGAATTCCCGAATGTCCAAGCCCTTTAGAATACCAAGCGCAGTATCACAGAGTGTCAATGTCTCACGGGTAAACACTGCTAGGACCCAACACTTACATGATTTTAAGACCGACACACTGCAGGACAGCCGGAGTCAGCTCAGAGCTGATACCAGCCTAAAGAGCATTGATCTTAAGCAGTACAGGAAATCAGTCCATGTGAGGAATGGTGGTTTGAAGCCTTTGAAACCTGTTGGCCCACAGAGACCAAGTATATTCCAGTGTACTGGCATAACTTCAGACCCTATGAAGAATGTGCAAGAGAAATACCACCAGGGTGACAACACGGCTCCTGTGTTCAGGCGCTTCTATGAGGTGATGCTTGAGGAGCCACAGAGAAGACGTCAAGACAGATCTGCCCACACATCAGGAACGTTTGGAGGTCACATGGATGATGAACACCTAGAGACTGCAACATCAGATTACTGCCTGGAGGTCCGTAGCTGCTCCCCAGAAGCCCTGCAGCTTCAGCTAGAGGGCCTGTGTCTGCAGGGGGAGTGGGGCCAGCTGGGTGGGGGTAAGAGGTATAGCTCACTACCtacaagtcacccagtaaaagaGACTTTCTTCAAGAGTATGGTGTCAAATGACTCCCATAAGGACGCAGGGTGTGCGAGTGGCAGGAAAATAGAGGACACAAGTAAAGAGGACAGTTCGAAGGACACAGCAGACCCTTTCTTCATTAACAAGTGGGATCCAGGCCAGCTTAAAGTCACCTTCACACTTAAAGACTCAAATGAGCAGATGATAAAGAGCGTCCTCCAAAAGCCACCCTCTTCCTGAAACTCAGAAAGAATCGACTCCATATTCTTTACAGTGGTCACTTGACAtcagaggtggaaaaagtacccaattgtcatacttgagtaaaagtaaagataccgtaATCGAAAGTGACTTAAGTAAAAGTGAATTtcacccagtgaaatactacttgagtgaagGTTTAAAAGtattggttttaaatatacgtaagtatcaaaagtaaaaatgatttcaaattccttatattaagccatacagacagcaccattttttttcatttacagacagccaggggcacactccagaCATCATTTATAAATTGaccatgtgtgtttagtgagtccgccagatcatagacagtagagatgaccaggggtgttctcttgataaagagcgtgaattggacccttttcctgtcctgctaagcactcAAAATGTAACGTGTACTGTTGggtttcagggaaaatgtatggagtaaaatgtacatcactttctttaggaatgtagtgaagtaaaagttgtcaaaaatataaatagtaaagtacagaaaaAAATACTTCAGTAGTACTTAAAAGTTGTGTAAGTAACTTTACACTGCTGCTCTACATTGTGAGGTCTGAGATTAAATTAAAAAAGGTCTGGCTGCTATAGATTCAACATTCTGTATGTCTGATATTTTAACTCCTGTATGAGTCATTGCTGCCCTTGTCAACTTCCATTTTTTATACAATTTTTGGAATTCAAGAGACACTATACagtcaaaagtatatggacacctgcttgtcaaacatctcattccaaattaatggacattaatatggaattggtcccccctttgccgcttataacagcctccactcttctgggaaggctttccactagatgttggaacattgctgcagggacttgcttccattcagtcacaagagcattagtgaggtcgggcactgattgtCATGCTGGGGACTGAAATGTGACTGAAggaacacaaacataggcacaggcatacaaacacatgataacatacgcactataaaCACACGCACTATAAACACAAGTACACATTGATTTTGTGTTGTAtatatatgtggtagtggagtatgggcctgagggcatagtgtgttgtgaattctgtaatgaaagtattgtaatgtttttaaaattgtataactgccttcattttgccaGACCCCAGGAAAAGTTGCTGCTGCCtttgcagcagctaatggggatccataataaatacaaatgctgaa

Function

NR:

description
uncharacterized protein LOC110525013

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604974.2 True 3348 mRNA 0.42 4 21741044 21744737

Neighbor

gene id symbol gene type direction distance location
dpp7 dpp7 coding upstream 287670 21445228 ~ 21453374 (+)
LOC110525469 LOC106585423 coding upstream 296450 21391871 ~ 21444594 (+)
pmpca LOC106585420 coding upstream 410238 21318048 ~ 21330806 (+)
ptgs1 LOC106585418 coding upstream 468899 21211574 ~ 21272145 (+)
LOC110525457 LOC106585409 coding upstream 642476 21062438 ~ 21098568 (+)
fgf17 LOC106585328 coding downstream 67630 21812367 ~ 21818773 (+)
fkbp15b LOC106585435 coding downstream 88840 21833192 ~ 21847552 (+)
LOC110525481 LOC106585436 coding downstream 103113 21847850 ~ 21852139 (+)
ccn1l2 LOC106585437 coding downstream 109427 21854164 ~ 21863431 (+)
si:dkey-90l8.3 LOC106585438 coding downstream 121142 21865879 ~ 21870071 (+)
G485043 NA non-coding upstream 31239 21709596 ~ 21709805 (+)
G484641 NA non-coding upstream 353603 21387157 ~ 21387441 (+)
G484639 NA non-coding upstream 355449 21385247 ~ 21385595 (+)
G484619 NA non-coding upstream 382527 21357776 ~ 21358517 (+)
G484570 NA non-coding upstream 389247 21351586 ~ 21351797 (+)
G485121 NA non-coding downstream 66980 21811717 ~ 21811925 (+)
G485129 NA non-coding downstream 81295 21826032 ~ 21826326 (+)
G485093 NA non-coding downstream 82889 21827626 ~ 21828343 (+)
G485092 NA non-coding downstream 84003 21828740 ~ 21831681 (+)
G485094 NA non-coding downstream 87425 21832162 ~ 21832821 (+)
G484726 NA other upstream 186947 21553732 ~ 21554097 (+)
G484674 NA other upstream 274139 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 777718 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 937238 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 1138042 20591803 ~ 20603188 (+)
G485780 NA other downstream 696579 22441316 ~ 22444619 (+)
G486127 NA other downstream 929505 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1445895 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 1784003 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 1908383 23653120 ~ 23667927 (+)

Expression


Co-expression Network