LOC110525481 (LOC106585436)


Basic Information

Item Value
gene id LOC110525481
gene name LOC106585436
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21847850 ~ 21852139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605614.2
TTAGTATGGAAGTGTCTCGCCGTTGCTTGGCAACGCAAGTTCTGACAGTTGGCTCTTcctgggtagctagctagcagagtTGTTGACTAGCGACGTTTATTTTTATTTGGCTAAATTAGCCTAGCATAGTTATTCCATTCCGTTATCTAGGTTGCCCTACACGAGGTGTAGTCCATGGGCAGCCTTGCCAGTGAGGTTTTGGATGAGGCCCACTGTTTCTGGGCGACGTGCGCTCATCCTTGCTGCTGGGAGTCGGAGCAGCGCATTGCCAAAGGCGTCCCACACTACATAAAGCAAATAATATCAGATGGGGGCAGAGCCCCTGTAGATGTGGAAGAGTTTCCAACCCTTAGTGTGGTTAATGTATCGGAGTGGACTGAGGGCCAAAAGACCCCTAAAGGGAAGCTGCTTTACAAGACGCGTAGCAAGGAGAATTTTGCCACAGATGCCTCTCTAACTCTTCTCTCCAGCCAGTCACAAGTCCAGCAGCGGGAGCATAACACAAGTGCAGACCTTCACGTTCCAGGGTTAAACTCTGTTGACCAGATTCCTCGTAATAAACAACACAAGGAAGTAAAGCTCAGCACAGCTCAGATCAATCAGTTGGCCAGCTGTTCCAGTGCATCATGGGGCTCTGGCTCCCTAGTGATGTGGGTACCCAATCCCCATCACATCCCGCAGTGCCAAGCCCGAAACAGGCCTAAATCTCCCTATGTACCTGTCAAGGAGCTCATTTGCCTTCCGTCCTTAAAAACCTCAAAAATTAACAGAAATCCAAGAATTCAAGTCCAAGATTCCAAGAATGTGCGGAAGAGGGTGCCGTTCCAGCTGACAACATTGACGTCAAAGCCGAGAAGTGAGCATGGGTTGAGCTCCCCAGTGGCACAGCAAACTGTCCACCCAACAGACCTTGCCCAGGCCAAGCCTGACACAGACACTGACcccaagagggaggaggaagaggcccAGACCCAGGCTCATACCAGCCCACACCCTCCCCCAGCACCCAGGATCCCCAGTGCTTTCCTCCTCAGGAACAAACCTGTGGTGTTCCACAGTGTCAGGGAGAGGGTACTGAGAAGACACACCCAGCAGGACCTCTCAACATACAAGTACAAACTGGACAGCAAGactggtgggggtggcATTGACTGGGATAGTCTGAGAAGACAGACCTATCTGTGGAGGAAGCACAACCTTCCACCCAACTGTGACAGAGAGAAGCCATTTCCCCCAGAGGACATGACTGTCAGCCAGATAGTAGGCTTTGGTTTCTACCCCATCCCAAAGGCCATGCTCCATCATGACCCAAGGAGCCCACTGTCCAAAGGTCCAGCTGTGTGGCGCTGCCTGGAATGTGTGGATGGGATGTGGTGTGGCCATGGTGGTGGTCCACTGGCCTCCATATCCAAGTGCCTTAACTCATTGGTGTCAAACAGTTCCTTCAAGTTCTGTAGCAGATCCAACCTCAGCTGTCAAAACCCCTTGCACCAACTCCTAGATGGAGATTACCTAAGTGATGTGGATCCAGGCAACAAGGGCACCATCGCTCCTCAGAACTCCATGATGTACCTTCAGGACACAACTTCAAACTACAGTGACTGTCAAGGAGAGGATAATGAATTTGGCTTATGTCCAGAGAGAGATGCTGAAGGAGGTCTAGGATCCCTAGAGAGGCCAGGTAGGAGCTCTTAGGACAAAGGGCACAGGTCTTCAGGGTCCCAGCCATCCCCTCCACCCTCTAGCTTCAACTCCGATACCTACGGAGATGGTTAACCTTGAATATGAAGAGACGGACACTGAACGATCCAGGACTAAGATCCAGGAGTAAATGTACTCATCATGCCTGTGAACATTCATATATTTAATCCAGAGCTATCCTTATGCTTTAGATAAATACATCTGGTGGCTTGCTTTTTTTTAATGTCAAGTATAGCCTAACATGGTAACGTAACAATaaacactaagtgtacaaaa

Function

NR:

description
uncharacterized protein LOC110525481

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605614.2 True 1977 mRNA 0.50 11 21847850 21852139

Neighbor

gene id symbol gene type direction distance location
fkbp15b LOC106585435 coding upstream 298 21833192 ~ 21847552 (+)
fgf17 LOC106585328 coding upstream 29077 21812367 ~ 21818773 (+)
LOC110525013 LOC106585433 coding upstream 103113 21741044 ~ 21744737 (+)
dpp7 dpp7 coding upstream 394476 21445228 ~ 21453374 (+)
LOC110525469 LOC106585423 coding upstream 403256 21391871 ~ 21444594 (+)
ccn1l2 LOC106585437 coding downstream 2025 21854164 ~ 21863431 (+)
si:dkey-90l8.3 LOC106585438 coding downstream 13740 21865879 ~ 21870071 (+)
bcl2l16 LOC106585329 coding downstream 36851 21888990 ~ 21890997 (+)
LOC110525486 LOC106585440 coding downstream 76994 21929133 ~ 21950200 (+)
LOC110525487 LOC106585441 coding downstream 245354 22097493 ~ 22105104 (+)
G485094 NA non-coding upstream 15029 21832162 ~ 21832821 (+)
G485092 NA non-coding upstream 16169 21828740 ~ 21831681 (+)
G485093 NA non-coding upstream 19507 21827626 ~ 21828343 (+)
G485129 NA non-coding upstream 21524 21826032 ~ 21826326 (+)
G485151 NA non-coding downstream 32137 21884276 ~ 21884582 (+)
G485161 NA non-coding downstream 58576 21910715 ~ 21911172 (+)
G485162 NA non-coding downstream 59757 21911896 ~ 21912118 (+)
G485393 NA non-coding downstream 113091 21965230 ~ 21965441 (+)
G484726 NA other upstream 293753 21553732 ~ 21554097 (+)
G484674 NA other upstream 380945 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 884524 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 1044044 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 1244848 20591803 ~ 20603188 (+)
G485780 NA other downstream 589177 22441316 ~ 22444619 (+)
G486127 NA other downstream 822103 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1338493 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 1676601 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 1800981 23653120 ~ 23667927 (+)

Expression


Co-expression Network