si:dkey-90l8.3 (LOC106585438)


Basic Information

Item Value
gene id si:dkey-90l8.3
gene name LOC106585438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 21865879 ~ 21870071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605617.2
GTCACCAAGAAGCGAATTAAATACCCGCTTGCGCAATTCAGTTAATAGTGTAGCTGTCAAAGACGCTAGTGATAGTTGAGAGTCGGATGATCAATGAGCTTCTGAGGGCTCAGCATGGTGAACAGTCAGCTGGGTGGTGGTGTGGCGTCACCCCCCAGGTCGTGTGCAGGATGCGGGGGGAAGATCGCAGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACACGCTGCCTCAAGTGCTCCTGCTGCCACGCACAGCTAGGCGACATTGGCAACACCTGCTACAGTAAAGGAGGCATGATCCTGTGTAGGAGCGACTATATCAGGTTGTTCGGGCACAGTGGAGCATGCAGCACCTGTGGCCAGTCGATCCCGGCCAATGAGATGGTTATGAGGGCACAGGGCAATGTGTACCATCTCAAGTGTTTCACATGTGCCACctgtagaaacagactggtgccAGGCGACCGCTTCCACTATGTTAACGGCACCATCTTCTGTGAGCACGACCGGCCAGAGGCTGCACTGCTCAACAGCCACCTGCCCCCACTCCAGAGTAACCCTGTGCTGCCTGAccagaagGTGTGCTGAGTGGTTAGAGCGGTGCGGTGTGCCTTCATCCTTCCCTTGTCTCCAGAggtctctccatccctgctcctGATACTGTTGTTGTGGATCCTTTTTAATTTAACATTTTCTTAAAcaagtcaagtcagttaagaagaaattcttattttacaaggACGGCccaacccagacgatgctgggacaattgtgcgtcgccctatgggactcccgatcatggccgattgTGATACACCCCGAGATcgaaccaggttctgtagtgccgcctctagcactgagatgcagtgccttagacatcTGCGCCACTTGGGATCCTCATCACCATCCACCATCTTGTCTCTTTGACCAGGAGATTATTTTTACTTGCAGGATCAACTTCAGATGTGTTGTACATATCTATGCTTGAGACAGTGTACAAATACACCGTAATGGTGAGTCGTGTGTGATACAATGCTGGTCTGCCCATCAAAGACAATATGGACAACATTAACTACTTCAGGACTGAGGTTACATGTTGTACTGTAAGTAAGGGACCCCCAATTCTGTGCACATCCAGAACTTTGGTGCTTGTGGACAAATCTTGCCATGAGTTTTAAGGGTATGGCCTGGACCCTCTCCAGGAAGAATAAAGCAAATCAAAATAAGCTTTTCCGTGGAGTCCACTGTCATAGTGGCATTGCTGTGGTTATCATTATTGTCAAGAATAACCCATCGCTTAGATAATGAACTCAGAATCCCTCTCAATGGCCTCACATCTGTTCCTTTGTGATGTTTAAACCATCATATGAATTGGGCTGAAGTCAAGGAAGAAGATAAATGTCCAATATTTTTCTATAATGCTATTGTGTGTTTCCCAGTAGAGTTCTATTTCCTGAATTAATGTCTCATTCAATTGAATTATGGATGCCTGTTCAATATGTGAAATTATCAGATGGAGACAAAAAATGTTATTAAAAGACTTGAACTGAAGTAATTGAAGCCTATGTGCAGTTGGTTGGTCACATGACACAAGTCTTGCGGAATTACATGGTAAACTACTACCCAGTTGGTGTGGCATTTCCTCCCTGTTTGTGCTGCATAGCTCCCCTCAGCCCTGTATGGTGAAAGCTTGCCTGATTACCCTGAGGAATGGAATTAGAAGGCTACAGTCCTGACCATTTACAGAAGCAATTAAACTTGAGTGGTGTATCTGTGCTGCCTGCTACAGTTCCTGCTCCTGGGAGGCTGAACTTTGGCCATATCCCGTGGCTGACTTTATTAAAGACTAATCTGGGAGCCGGCCTAATTAAAGGGAGAGGCTCCTACGCATCCAGCCAGCGTGTCTTGTCTgtaggtaaaaaaaaacacaacaacaatCTGATGCTTGGACGGTTTACCATGTTGTAATTAAAAGACACAAGC
>XM_021605616.2
TAGTGTAGCTGTCAAAGACGCTAGTGATAGTTGAGAGTCGGATGATCAATGTAATTGACTTAAAAATATGTTGCATGCAATCTCTTTAAAACTAATTTTATTACATTGTATCTTTGATAACGTGCGCTTTTTCCTTTTTGACATTGTTTAAATCTTTCGAAAATGTGTCGCTTTATTTGTGGGATATGGATATCATAAAAGCGCTAGTTTGTCACAGTCAGATTTAACTGTTGTTGAAACATTATCCGCTGTCGTCCATTGTTTTGTTTCTGCTTTTTTACAACAACTTCTCCACGTCTGAATTCTCTGGAACGCACATCAAGGAGCTTCTGAGGGCTCAGCATGGTGAACAGTCAGCTGGGTGGTGGTGTGGCGTCACCCCCCAGGTCGTGTGCAGGATGCGGGGGGAAGATCGCAGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACACGCTGCCTCAAGTGCTCCTGCTGCCACGCACAGCTAGGCGACATTGGCAACACCTGCTACAGTAAAGGAGGCATGATCCTGTGTAGGAGCGACTATATCAGGTTGTTCGGGCACAGTGGAGCATGCAGCACCTGTGGCCAGTCGATCCCGGCCAATGAGATGGTTATGAGGGCACAGGGCAATGTGTACCATCTCAAGTGTTTCACATGTGCCACctgtagaaacagactggtgccAGGCGACCGCTTCCACTATGTTAACGGCACCATCTTCTGTGAGCACGACCGGCCAGAGGCTGCACTGCTCAACAGCCACCTGCCCCCACTCCAGAGTAACCCTGTGCTGCCTGAccagaagGTGTGCTGAGTGGTTAGAGCGGTGCGGTGTGCCTTCATCCTTCCCTTGTCTCCAGAggtctctccatccctgctcctGATACTGTTGTTGTGGATCCTTTTTAATTTAACATTTTCTTAAAcaagtcaagtcagttaagaagaaattcttattttacaaggACGGCccaacccagacgatgctgggacaattgtgcgtcgccctatgggactcccgatcatggccgattgTGATACACCCCGAGATcgaaccaggttctgtagtgccgcctctagcactgagatgcagtgccttagacatcTGCGCCACTTGGGATCCTCATCACCATCCACCATCTTGTCTCTTTGACCAGGAGATTATTTTTACTTGCAGGATCAACTTCAGATGTGTTGTACATATCTATGCTTGAGACAGTGTACAAATACACCGTAATGGTGAGTCGTGTGTGATACAATGCTGGTCTGCCCATCAAAGACAATATGGACAACATTAACTACTTCAGGACTGAGGTTACATGTTGTACTGTAAGTAAGGGACCCCCAATTCTGTGCACATCCAGAACTTTGGTGCTTGTGGACAAATCTTGCCATGAGTTTTAAGGGTATGGCCTGGACCCTCTCCAGGAAGAATAAAGCAAATCAAAATAAGCTTTTCCGTGGAGTCCACTGTCATAGTGGCATTGCTGTGGTTATCATTATTGTCAAGAATAACCCATCGCTTAGATAATGAACTCAGAATCCCTCTCAATGGCCTCACATCTGTTCCTTTGTGATGTTTAAACCATCATATGAATTGGGCTGAAGTCAAGGAAGAAGATAAATGTCCAATATTTTTCTATAATGCTATTGTGTGTTTCCCAGTAGAGTTCTATTTCCTGAATTAATGTCTCATTCAATTGAATTATGGATGCCTGTTCAATATGTGAAATTATCAGATGGAGACAAAAAATGTTATTAAAAGACTTGAACTGAAGTAATTGAAGCCTATGTGCAGTTGGTTGGTCACATGACACAAGTCTTGCGGAATTACATGGTAAACTACTACCCAGTTGGTGTGGCATTTCCTCCCTGTTTGTGCTGCATAGCTCCCCTCAGCCCTGTATGGTGAAAGCTTGCCTGATTACCCTGAGGAATGGAATTAGAAGGCTACAGTCCTGACCATTTACAGAAGCAATTAAACTTGAGTGGTGTATCTGTGCTGCCTGCTACAGTTCCTGCTCCTGGGAGGCTGAACTTTGGCCATATCCCGTGGCTGACTTTATTAAAGACTAATCTGGGAGCCGGCCTAATTAAAGGGAGAGGCTCCTACGCATCCAGCCAGCGTGTCTTGTCTgtaggtaaaaaaaaacacaacaacaatCTGATGCTTGGACGGTTTACCATGTTGTAATTAAAAGACACAAGC

Function

NR:

description
LIM domain transcription factor LMO4-B-like

GO: NA

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605617.2 False 1992 mRNA 0.47 5 21865879 21870071
XM_021605616.2 True 2220 mRNA 0.46 5 21865924 21870071

Neighbor

gene id symbol gene type direction distance location
ccn1l2 LOC106585437 coding upstream 2448 21854164 ~ 21863431 (+)
LOC110525481 LOC106585436 coding upstream 13740 21847850 ~ 21852139 (+)
fkbp15b LOC106585435 coding upstream 18327 21833192 ~ 21847552 (+)
fgf17 LOC106585328 coding upstream 47106 21812367 ~ 21818773 (+)
LOC110525013 LOC106585433 coding upstream 121142 21741044 ~ 21744737 (+)
bcl2l16 LOC106585329 coding downstream 18919 21888990 ~ 21890997 (+)
LOC110525486 LOC106585440 coding downstream 59062 21929133 ~ 21950200 (+)
LOC110525487 LOC106585441 coding downstream 227422 22097493 ~ 22105104 (+)
adgrd2 LOC106585442 coding downstream 325352 22195423 ~ 22214704 (+)
LOC110525489 olm2a coding downstream 510205 22380276 ~ 22395072 (+)
G485094 NA non-coding upstream 33058 21832162 ~ 21832821 (+)
G485092 NA non-coding upstream 34198 21828740 ~ 21831681 (+)
G485093 NA non-coding upstream 37536 21827626 ~ 21828343 (+)
G485151 NA non-coding downstream 14205 21884276 ~ 21884582 (+)
G485161 NA non-coding downstream 40644 21910715 ~ 21911172 (+)
G485162 NA non-coding downstream 41825 21911896 ~ 21912118 (+)
G485393 NA non-coding downstream 95159 21965230 ~ 21965441 (+)
G485415 NA non-coding downstream 123452 21993523 ~ 21993846 (+)
G484726 NA other upstream 311782 21553732 ~ 21554097 (+)
G484674 NA other upstream 398974 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 902553 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 1062073 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 1262877 20591803 ~ 20603188 (+)
G485780 NA other downstream 571245 22441316 ~ 22444619 (+)
G486127 NA other downstream 804171 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1320561 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 1658669 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 1783049 23653120 ~ 23667927 (+)

Expression


Co-expression Network