LOC110525487 (LOC106585441)


Basic Information

Item Value
gene id LOC110525487
gene name LOC106585441
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22097493 ~ 22105104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979609.1
ATCGCAAGGCCAGAGACAGTGGAACAGTGAAAGGGCTGCCTGCTCGAGTCTAGCGTTCTTACTGAATGTATAGTAAATTCCTCCTCCTCGATTACTCACATGCAGCTTTCTTGGCTAAACGAAAAAACTGCCAAAGGAAAACAGCTTCTCTCAGACCTCCAACAGGATCTAAATGCAAACATATTTTTTGCCAACTAGTTATATCTTTAGAAGTCCTTGAAAAGCATAGGCTATATGTGTGTATTGTATAGATTTCGATATAATCAATAACGCTCTAACGACAACTTGGACACTGCATTTGAGTTCAATGACAAACTGACAAGGAGGCAGCTACATGGACATTCACGCTCCTACAATCTCAGAGACGCTGTGTTCTTAATTTTTTCTCTCCCTTCGATTCGTGTGGAAATCATTTTGGTACAGTTGATGATTTCCAATAGAACTAGTGGCAGTGCTCATTGATCGAGTTAGTATTTGGTCGGCAAAGGACTAATTCATTCGTTTACTAATGCCTTGCAAAATGTTTGAATCCAAATACCTCTGAAGAAATAGAAGGGACCAGTAGCAGACCCATGCAGGGCTTCGATAGTTGGTACGTTTTTCATTCCTTAGGAATTATTTTGCAAGTGGCATTTCTTCTCGCACGATAATATAAGAATATATTTATATGCTGCATATAATTAATTAGCATTGGTAAAACGAAGGATTCCGTCACTTTAATTAATGAATTATATGTcatgagagagagatgcagagattCAGATGATGATTTCCATTGGCAGATGATGCGTAGCGTGGAGAACACGTGTCCATTTTTGCATCATATTTTTTTCTGATCTGGAATTCTTCCTTGTCACACCAAGAAGGGAAAGAAGCTGACTGCCAATGCACGGGCTATAGATTTGCGTTTTATGGAAATCTTGGGTTTCAGATTTGAGGAAAACACGTTTAACATAATCTCCTCTCCGGTAACTATGCTTTTCCACGGCCTCCCTGGAGGCGAAATGCACGTTGTTGTGGAAGAAATGGACCGGAGAAGAAAGAGCGAATCCGCAGCTATCAGTTCGGCCATAGATATGGGAGAATCTGAAACGAACATGTCGTGCATGAACAGCGACAGGGTGTCTTTGTGCGCGGGCTGCGGCGGGAAGATCGCTGACCGCTACTACCTGCTGGCAGTGGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGTAAACTCAACCTCGAGTCCGAGCTCACCTGCTTCAGCAAAGACGGAAGTATCTACTGCAAGGAAGATTATTACAGGTTTTCGGTCCAGAGATGTGCCCGGTGCCACCTCGGGATCTCGGCCTCAGAGATGGTGATGCGGGCCAGGGACTTGGTGTACCACTTGAACTGTTTCACCTGCACATCCTGCAACAAGATGCTAACGACTGGGGACCACTTTGGCATGAAAGACAGTCTGGTCTACTGTCGGCTGCACTTTGAAAATCTCATACAGGGGGAATATCAGACACATTTCAATCATGCGGATGTAGCCTCTCACAAAGGACTGGGACCTGCCAATGCATTGGGACTATCCTATTTCAACGGCGTGGGGAGTGTGCATAAAGGGCGGCCCAGGAAAAGGAAAAGTCCCGGGCCAGGAGCAGATTTAGCAGCCTACAATGCCGCACTCAGCTGTAATGAGAACGACGGAGACTCTATGGACAGGGACTCCTACAGCTCCAGTCAGAAGACCAAGCGCATGCGGACctccttcaaacaccaccagctGAGGACCATGAAGTCCTACTTTGCCATCAACCACAACCCAGACGCCAAGGACCTGAAGCAGCTGGCCCAGAAGACTGGCCTCACCAAGCGTGTActacagGTCTGGTTCCAGAATGCTCGGGCCAAGTTCCGGCGGAACCTGCTGAGACAGGAAAACACGGGCGTGGACAAGACCTCAGACGGCTCCACCCTGCAGGGGGGCACGCCCTCCGGACCTGCCTCCGATATCTCCAACGCCTCCATGAGTCCTTCCAGCACCCCCACCACCCTGACAGACCTGACCAACCCCACCTTGCCCACCGTCACCTCCGTGTTAACCTCTGTCTCTGGCAGCATGGATGTTCACGAGTGCAGAAGCCCGTTGCAGACCACCCTGACCAGTCTGTTCTGATGCCCCCTTACAGACGGACCCCTTCAGCTTCATCTGATGCCCTGACCCTTTAAACACCCTCACCAGCCTCATCccgaggccccccccccccccccgactctgTCCCCTTGGAACTAAAACACAGACCTTTGACAGAGACATTTAATGGACTAGTAAAATTAAGGTAAAGGAAAAATACTCTTACTTTTACTCTGAGCCCATTTGAGAATATTTGCGTAGTGAGGCTGCCAAGCCTTGCAGAAGGaacagttattgttattttgttgtggTTGTTTTGTTGAGAACTGAAGAGacttgatttgcatttttcaaTGTTTACAGAATGAAACTGTGGAAAAGAAGAAAAACTGCTTAATTTTGGAAATTCATTTTTTTCCAGCACAATATTTATGTTGTTGTACAGGAGTCACTGTTAGGAAACATTGAGAAGGATTGTAAAATGATGGGAAATCTGAGATTAAACACAGGCTAAAATATG
>XM_021605622.2
TCGCAAGGCCAGAGACAGTGGAACAGTGAAAGGGCTGCCTGCTCGAGTCTAGCGTTCTTACTGAATGTATAGTAAATTCCTCCTCCTCGATTACTCACATGCAGCTTTCTTGGCTAAACGAAAAAACTGCCAAAGGAAAACAGCTTCTCTCAGACCTCCAACAGGATCTAAATGCAAACATATTTTTTGCCAACTAGTTATATCTTTAGAAGTCCTTGAAAAGCATAGGCTATATGTGTGTATTGTATAGATTTCGATATAATCAATAACGCTCTAACGACAACTTGGACACTGCATTTGAGTTCAATGACAAACTGACAAGGAGGCAGCTACATGGACATTCACGCTCCTACAATCTCAGAGACGCTGTGTTCTTAATTTTTTCTCTCCCTTCGATTCGTGTGGAAATCATTTTGGTACAGTTGATGATTTCCAATAGAACTAGTGGCAGTGCTCATTGATCGAGTTAGTATTTGGTCGGCAAAGGACTAATTCATTCGTTTACTAATGCCTTGCAAAATGTTTGAATCCAAATACCTCTGAAGAAATAGAAGGGACCAGTAGCAGACCCATGCAGGGCTTCGATAGTTGGTACGTTTTTCATTCCTTAGGAATTATTTTGCAAGTGGCATTTCTTCTCGCACGATAATATAAGAATATATTTATATGCTGCATATAATTAATTAGCATTGGTAAAACGAAGGATTCCGTCACTTTAATTAATGAATTATATGTcatgagagagagatgcagagattCAGATGATGATTTCCATTGGCAGATGATGCGTAGCGTGGAGAACACGTGTCCATTTTTGCATCATATTTTTTTCTGATCTGGAATTCTTCCTTGTCACACCAAGAAGGGAAAGAAGCTGACTGCCAATGCACGGGCTATAGATTTGCGTTTTATGGAAATCTTGGGTTTCAGATTTGAGGAAAACACGTTTAACATAATCTCCTCTCCGGTAACTATGCTTTTCCACGGCCTCCCTGGAGGCGAAATGCACGTTGTTGTGGAAGAAATGGACCGGAGAAGAAAGAGCGAATCCGCAGCTATCAGTTCGGCCATAGATATGGGAGAATCTGAAACGAACATGTCGTGCATGAACAGCGACAGGGTGTCTTTGTGCGCGGGCTGCGGCGGGAAGATCGCTGACCGCTACTACCTGCTGGCAGTGGACAAACAGTGGCACATGCGCTGTCTCAAGTGCTGCGAGTGTAAACTCAACCTCGAGTCCGAGCTCACCTGCTTCAGCAAAGACGGAAGTATCTACTGCAAGGAAGATTATTACAGAAGGTTTTCGGTCCAGAGATGTGCCCGGTGCCACCTCGGGATCTCGGCCTCAGAGATGGTGATGCGGGCCAGGGACTTGGTGTACCACTTGAACTGTTTCACCTGCACATCCTGCAACAAGATGCTAACGACTGGGGACCACTTTGGCATGAAAGACAGTCTGGTCTACTGTCGGCTGCACTTTGAAAATCTCATACAGGGGGAATATCAGACACATTTCAATCATGCGGATGTAGCCTCTCACAAAGGACTGGGACCTGCCAATGCATTGGGACTATCCTATTTCAACGGCGTGGGGAGTGTGCATAAAGGGCGGCCCAGGAAAAGGAAAAGTCCCGGGCCAGGAGCAGATTTAGCAGCCTACAATGCCGCACTCAGCTGTAATGAGAACGACGGAGACTCTATGGACAGGGACTCCTACAGCTCCAGTCAGAAGACCAAGCGCATGCGGACctccttcaaacaccaccagctGAGGACCATGAAGTCCTACTTTGCCATCAACCACAACCCAGACGCCAAGGACCTGAAGCAGCTGGCCCAGAAGACTGGCCTCACCAAGCGTGTActacagGTCTGGTTCCAGAATGCTCGGGCCAAGTTCCGGCGGAACCTGCTGAGACAGGAAAACACGGGCGTGGACAAGACCTCAGACGGCTCCACCCTGCAGGGGGGCACGCCCTCCGGACCTGCCTCCGATATCTCCAACGCCTCCATGAGTCCTTCCAGCACCCCCACCACCCTGACAGACCTGACCAACCCCACCTTGCCCACCGTCACCTCCGTGTTAACCTCTGTCTCTGGCAGCATGGATGTTCACGAGTGCAGAAGCCCGTTGCAGACCACCCTGACCAGTCTGTTCTGATGCCCCCTTACAGACGGACCCCTTCAGCTTCATCTGATGCCCTGACCCTTTAAACACCCTCACCAGCCTCATCccgaggccccccccccccccccgactctgTCCCCTTGGAACTAAAACACAGACCTTTGACAGAGACATTTAATGGACTAGTAAAATTAAGGTAAAGGAAAAATACTCTTACTTTTACTCTGAGCCCATTTGAGAATATTTGCGTAGTGAGGCTGCCAAGCCTTGCAGAAGGaacagttattgttattttgttgtggTTGTTTTGTTGAGAACTGAAGAGacttgatttgcatttttcaaTGTTTACAGAATGAAACTGTGGAAAAGAAGAAAAACTGCTTAATTTTGGAAATTCATTTTTTTCCAGCACAATATTTATGTTGTTGTACAGGAGTCACTGTTAGGAAACATTGAGAAGGATTGTAAAATGATGGGAAATCTGAGATTAAACACAGGCTAAAATATG

Function

NR:

description
LIM/homeobox protein Lhx2-like

GO: NA

KEGG:

id description
K09373 LHX2_9; LIM homeobox protein 2/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979609.1 False 2637 mRNA 0.47 5 22097493 22105104
XM_021605622.2 True 2639 mRNA 0.47 5 22097494 22105104

Neighbor

gene id symbol gene type direction distance location
LOC110525486 LOC106585440 coding upstream 147293 21929133 ~ 21950200 (+)
bcl2l16 LOC106585329 coding upstream 206496 21888990 ~ 21890997 (+)
si:dkey-90l8.3 LOC106585438 coding upstream 227422 21865879 ~ 21870071 (+)
ccn1l2 LOC106585437 coding upstream 234062 21854164 ~ 21863431 (+)
LOC110525481 LOC106585436 coding upstream 245354 21847850 ~ 21852139 (+)
adgrd2 LOC106585442 coding downstream 90319 22195423 ~ 22214704 (+)
LOC110525489 olm2a coding downstream 275172 22380276 ~ 22395072 (+)
LOC110525496 LOC106585447 coding downstream 361381 22466485 ~ 22507759 (+)
LOC110525121 NA coding downstream 402943 22508047 ~ 22511597 (+)
LOC110525015 LOC106585332 coding downstream 421663 22526767 ~ 22528403 (+)
G485490 NA non-coding upstream 22670 22074556 ~ 22074823 (+)
G485488 NA non-coding upstream 25459 22071777 ~ 22072034 (+)
G485451 NA non-coding upstream 61386 22035810 ~ 22036107 (+)
G485440 NA non-coding upstream 74862 22022408 ~ 22022631 (+)
G485429 NA non-coding upstream 82085 22015179 ~ 22015408 (+)
G485530 NA non-coding downstream 8907 22114011 ~ 22114223 (+)
G485539 NA non-coding downstream 15078 22120182 ~ 22120434 (+)
G485583 NA non-coding downstream 50249 22155353 ~ 22155736 (+)
G485593 NA non-coding downstream 60169 22165273 ~ 22165491 (+)
G485597 NA non-coding downstream 64557 22169661 ~ 22170015 (+)
G484726 NA other upstream 543396 21553732 ~ 21554097 (+)
G484674 NA other upstream 630588 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1134167 20958755 ~ 20984618 (+)
G483669 LOC106585393 other upstream 1293687 20802776 ~ 20803806 (+)
LOC110525431 LOC106585378 other upstream 1494491 20591803 ~ 20603188 (+)
G485780 NA other downstream 336212 22441316 ~ 22444619 (+)
G486127 NA other downstream 569138 22674242 ~ 22674452 (+)
LOC110525518 LOC106585474 other downstream 1085528 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 1423636 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 1548016 23653120 ~ 23667927 (+)

Expression


Co-expression Network