LOC110525495 (LOC102784428)


Basic Information

Item Value
gene id LOC110525495
gene name LOC102784428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22460769 ~ 22464361 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605632.2
AGCCTGATGAGCAGCACGCATAGAAGCCTACTTATCAGATATAAGCAACAGCAAAATCAGTATCACTTCTAACCATATCGAAGCATCCTGACCTGAAATCACAGACTGTGATGCCATAGCCTAGAATTATAATTCAACGGATGCCATCATCATGCTTGACGAAATGATTGAGGTTATGTGATTATGTATGTGACCTATTGCTGGAGGAATCCAATGTCCAGCCTGTGTCCACCCCAGTGACTGTGTGTGGAGATATACATGGACAGTTTTATGATCTGTGTGAACTCTTCAGAACTGGAGGACAGGTCCCAGACACAAACTATATTTTCATGGGTGACTTTGTTGACCGGGGATATTACAGCTTGGAGACATTCACATACCTGCTGGTTTTAAAAGCCAAATGGCCTGACCGCATCACGCTTTTAAGAGGAAACCACGAAAGCAGACAAATAACCCAAGTATATGGCTTTTATGATGAATGCCAAACCAAATATGGAAATGCCAATGCCTGGCGCTACTGTACCAAAGTGTTTGATATGTTAACAGTTGCAGCGCTGATGGATGAGCAGATTCTGTGTGTTCATGGGGGCCTCTCCCCAGACATAAAGACCCTGGACCAAATCAGAACCATTGAGCGTAACCAGGAGATCCCCCACAAGGGAGCATTCTGTGACCTTGTCTGGTCAGACCCCGAGGACGTCGACACCTGGGCCATCAGCCCCAGGGGAGCTGGGTGGCTGTTTGGTGCAAAGGTCACCAATGAGTTTGTTCACATCAACAACTTGACGTTGATCTGTCGGGCACATCAACTAGTCCATGAAGGTTACAAGTTCATGTTTGATGAGAAGCTGGTCACGGTCTGGTCAGCTCCTAACTACTGCTATCGCTGCGGCAACATTGCCTCCATCATGGTCTTCAAAGACGCCAATACGAGGGAGCCCAAGCTGTTTCGGGCGGTGCCCGACTCAGAGAGAGTAATTCCACCCAGAACAACGACACCATATTTCCTGTAAACACTGCACTAACTATCATCATCATCTTTGGCCACACTGTTATCAAGCACCACATTTGTAATGCATCACATACAGTGGAGTGACAACAACTCCCGTTGAAGTGACACCACTGATTATGTCATTCATATtttaccagtggaggctgctgaggggaggacggctcataagaATGGCTGGAATAGAgccaatggaatggtatcaaccacatggaaaccacgtgttttataccattccattgactccattccagccattcttatgagccgttctcccatcagcagcctccactgtattttactgtaggctactgtacgtAACTTATATACAGTACTATTGTTTTTGTGTCTGCTGTAGCTCTGCGTGCCAACACGTGTGTTCACACAGAAGTACTATATCAAGTAGTGCCACTACTCAAACGTTTCAAACGTTTTAGGTGATAGCAGTGTCAATATTTAATGTTTTTATCAAACACGTGTTAGATTTAATGAATCATGGTAGATTACAATAAGAACACGTGAAGTGAAACAGGAACACTTATTTTAGCCACTTTACAGGGAGAGGACACTGTTTCTGTTTGACTTCGGTCTATTTGCAGCCTATTAGGAATATACTGTAGAAGATGTTATTTGTCAGATGttagtttttatttttgtaatgtATATTTATTGAATTTCATGTATCGTgtagatatatatacagtataaagcACTCAAATTAGAAATATGTTTAAATGAGAATTTACTCATGCACTTAACTTAGGTATCTTATTTAGTCTTGTAATAAAGCTATAAGCCTGATAATTGAGGTGAGAAATTATTATAATGAACATCACTGATCTAAAACATATAGATAGGTTCTGTGATGGAAAATTGTATGTTGGTGATTTTCTATTTACCAATTTCTATGTTCTGTGTTTGTGCTTTTCTgttaaccaatttctgtgttcatgcaagtgactgttTGAACGAATCCTCACAATTAGTGTCTGCAATTTGGTAGTACGCCCAGACCCTTGTTTAGAGAAagggatatctcagtttcaaggtctcagcttagagagaagaagcctcgtgaggtattagtctgtcacatgcatgacccagtattggtcagtcacatgaATGAAGTAAACGTTAatgatgaataagctaaatcatgcaacTATGACTTGTCAGTATATAAAGGAACTAATAGGACTGCCCCGTTAGAGCTCCTGACAAACATTCACTATGGTGCATCAActttgttggaacctctccagcgagCTGATAaaaacaatgattcatttaagattgacttcgaccctgtgtaagaatttccacaatAGTTCATATGTCTGTAGATAACCTGATTCAGCAGTAAGGCTAGCTGTGGTTATTTGTGTGAACTGTCTGTGATACAGAGTGAGCTTGTGAGATTGTAGGCTATCAAAATGAGGGATGATGCTATTACTGTAAATCATTAAATACGTGGAAATACAA
>XM_021605631.2
ACAGCAGATGGCAGCACAACGCAAACTGTTCAGTAAATCTGCCTGACGGAACCGAACATGCACAGTAGTAGAAACATTAGCAAACAGCTGATACAATGGCGCCACTGGACCTGGATAAATACGCGGAGATTGCCAAGCAGTGTAAATATTTACCTGAAAACGACCTCAAGAGGTTATGTGATTATGTATGTGACCTATTGCTGGAGGAATCCAATGTCCAGCCTGTGTCCACCCCAGTGACTGTGTGTGGAGATATACATGGACAGTTTTATGATCTGTGTGAACTCTTCAGAACTGGAGGACAGGTCCCAGACACAAACTATATTTTCATGGGTGACTTTGTTGACCGGGGATATTACAGCTTGGAGACATTCACATACCTGCTGGTTTTAAAAGCCAAATGGCCTGACCGCATCACGCTTTTAAGAGGAAACCACGAAAGCAGACAAATAACCCAAGTATATGGCTTTTATGATGAATGCCAAACCAAATATGGAAATGCCAATGCCTGGCGCTACTGTACCAAAGTGTTTGATATGTTAACAGTTGCAGCGCTGATGGATGAGCAGATTCTGTGTGTTCATGGGGGCCTCTCCCCAGACATAAAGACCCTGGACCAAATCAGAACCATTGAGCGTAACCAGGAGATCCCCCACAAGGGAGCATTCTGTGACCTTGTCTGGTCAGACCCCGAGGACGTCGACACCTGGGCCATCAGCCCCAGGGGAGCTGGGTGGCTGTTTGGTGCAAAGGTCACCAATGAGTTTGTTCACATCAACAACTTGACGTTGATCTGTCGGGCACATCAACTAGTCCATGAAGGTTACAAGTTCATGTTTGATGAGAAGCTGGTCACGGTCTGGTCAGCTCCTAACTACTGCTATCGCTGCGGCAACATTGCCTCCATCATGGTCTTCAAAGACGCCAATACGAGGGAGCCCAAGCTGTTTCGGGCGGTGCCCGACTCAGAGAGAGTAATTCCACCCAGAACAACGACACCATATTTCCTGTAAACACTGCACTAACTATCATCATCATCTTTGGCCACACTGTTATCAAGCACCACATTTGTAATGCATCACATACAGTGGAGTGACAACAACTCCCGTTGAAGTGACACCACTGATTATGTCATTCATATtttaccagtggaggctgctgaggggaggacggctcataagaATGGCTGGAATAGAgccaatggaatggtatcaaccacatggaaaccacgtgttttataccattccattgactccattccagccattcttatgagccgttctcccatcagcagcctccactgtattttactgtaggctactgtacgtAACTTATATACAGTACTATTGTTTTTGTGTCTGCTGTAGCTCTGCGTGCCAACACGTGTGTTCACACAGAAGTACTATATCAAGTAGTGCCACTACTCAAACGTTTCAAACGTTTTAGGTGATAGCAGTGTCAATATTTAATGTTTTTATCAAACACGTGTTAGATTTAATGAATCATGGTAGATTACAATAAGAACACGTGAAGTGAAACAGGAACACTTATTTTAGCCACTTTACAGGGAGAGGACACTGTTTCTGTTTGACTTCGGTCTATTTGCAGCCTATTAGGAATATACTGTAGAAGATGTTATTTGTCAGATGttagtttttatttttgtaatgtATATTTATTGAATTTCATGTATCGTgtagatatatatacagtataaagcACTCAAATTAGAAATATGTTTAAATGAGAATTTACTCATGCACTTAACTTAGGTATCTTATTTAGTCTTGTAATAAAGCTATAAGCCTGATAATTGAGGTGAGAAATTATTATAATGAACATCACTGATCTAAAACATATAGATAGGTTCTGTGATGGAAAATTGTATGTTGGTGATTTTCTATTTACCAATTTCTATGTTCTGTGTTTGTGCTTTTCTgttaaccaatttctgtgttcatgcaagtgactgttTGAACGAATCCTCACAATTAGTGTCTGCAATTTGGTAGTACGCCCAGACCCTTGTTTAGAGAAagggatatctcagtttcaaggtctcagcttagagagaagaagcctcgtgaggtattagtctgtcacatgcatgacccagtattggtcagtcacatgaATGAAGTAAACGTTAatgatgaataagctaaatcatgcaacTATGACTTGTCAGTATATAAAGGAACTAATAGGACTGCCCCGTTAGAGCTCCTGACAAACATTCACTATGGTGCATCAActttgttggaacctctccagcgagCTGATAaaaacaatgattcatttaagattgacttcgaccctgtgtaagaatttccacaatAGTTCATATGTCTGTAGATAACCTGATTCAGCAGTAAGGCTAGCTGTGGTTATTTGTGTGAACTGTCTGTGATACAGAGTGAGCTTGTGAGATTGTAGGCTATCAAAATGAGGGATGATGCTATTACTGTAAATCATTAAATACGTGGAAATACAA

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605632.2 False 2494 mRNA 0.41 7 22460769 22464148
XM_021605631.2 True 2494 mRNA 0.42 7 22460769 22464361

Neighbor

gene id symbol gene type direction distance location
LOC110525493 LOC106585445 coding downstream 3021 22441244 ~ 22457748 (-)
LOC110525492 rpl35 coding downstream 19633 22438886 ~ 22441136 (-)
nr6a1a LOC106585444 coding downstream 81770 22264623 ~ 22378999 (-)
nr5a1a LOC106585443 coding downstream 229367 22215815 ~ 22231402 (-)
tubb2b tubb2b coding downstream 565961 21892070 ~ 21894808 (-)
LOC110525498 shlb2 coding upstream 85853 22550214 ~ 22572561 (-)
LOC110525497 LOC106585448 coding upstream 108425 22572786 ~ 22579398 (-)
LOC110525500 LOC106585450 coding upstream 129148 22593509 ~ 22617566 (-)
LOC110525501 LOC106585453 coding upstream 163594 22627955 ~ 22636391 (-)
LOC110525506 LOC106585454 coding upstream 179791 22642795 ~ 22646088 (-)
G485969 NA non-coding downstream 33641 22424226 ~ 22427128 (-)
G485959 NA non-coding downstream 53503 22406935 ~ 22407266 (-)
G485935 NA non-coding downstream 100213 22360190 ~ 22360556 (-)
G485930 NA non-coding downstream 106180 22353136 ~ 22354589 (-)
G485929 NA non-coding downstream 108819 22351724 ~ 22351950 (-)
G486024 NA non-coding upstream 50076 22514437 ~ 22514684 (-)
G486037 NA non-coding upstream 64124 22528485 ~ 22529833 (-)
G486573 NA non-coding upstream 76241 22540602 ~ 22540811 (-)
G486575 NA non-coding upstream 79002 22543363 ~ 22543636 (-)
G486586 NA non-coding upstream 115639 22580000 ~ 22580206 (-)
G485877 NA other downstream 179743 22280726 ~ 22281026 (-)
G485864 NA other downstream 197416 22260634 ~ 22263353 (-)
G485279 NA other downstream 626409 21833548 ~ 21834360 (-)
G484895 LOC106585423 other downstream 1026050 21431930 ~ 21434719 (-)
G484807 LOC106585304 other downstream 1162596 21296580 ~ 21298173 (-)
G486716 NA other upstream 373292 22837653 ~ 22840566 (-)
G486953 NA other upstream 786925 23251286 ~ 23258106 (-)
G487022 bicdl1 other upstream 921173 23385534 ~ 23385907 (-)
G487016 NA other upstream 925656 23390017 ~ 23392062 (-)
LOC110525180 hps4 other upstream 1118675 23582127 ~ 23587892 (-)

Expression


Co-expression Network