LOC110525512 (LOC106585461)


Basic Information

Item Value
gene id LOC110525512
gene name LOC106585461
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22759441 ~ 22766009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605684.2
CCCAGGGAGATAGTGGAGATGATCAGTCCCACAGTCTGGACACCACCAGCCTTCCACTGCTGGAACATGGTTGTTATCAAGTTGAATGTGTTCCATAGCACTCCAATAATGACCAGGACAGCTATACCATACAGCTGGACTTCATGTTGTCCAGAACCCATAGTTATAACCAGATGAGAACAATTTTGGCAGAATTCCTCTTTGTTATGAAGCAGAGAATTATTCACATACCATTTTATAGAGAAAATGAGTATTCCTATGCAAATCTGTTTCTGTGAGTAATGACTCTCTGAGATAATGTAAATGAGGGACAATGTTGATTGATGGTAGGGCATGGCCATTCCACAGCAGAATTTGAAAACACAAATTAGCCATGAGGAAGACAAGTCACGTTATTCATGACCATTTTGCTTTTATGAAAAGCATGCATGAAGTATACATTGACTAGAATGTAGACTATTACTGGATTTGCAATGCTGTAACCAGACACAGATTCAATtgaagatggagggaaggagtagCAAGATAGTCAATACTTGTATCATCTCAACCACTCTCATTGTCCCTAGTGAGGATAAACATGACATGTTACTTACTGTCTGCCTTGCCACTGTCCATCGTGCCATGGTTTTTGTTTACAGACCAGACAGTCATTTACTTACAAGAATCTTCTGGGgcttgttttacatttttaaaccATGGAAATTATATGTATTTTATTTTCCTTTGCCTGATGAGGCTGAATGTATTTCCTTATTCAAATCCATTATGTATTTCACTTGTACAAGTTAGCTTATTCAAAATGAAGTTTTGTGCTTTTCATCCTGTTTCAATGTCATGTCATTCACAATGCAAATGGTTTTGAGCGCATAGTCTCTTTTCTCCAGATTTGATCTTTTTCTCAGGCATAATTGCACAAGCAATTTTAATGTCACACAATAACAAAAAACGAAATATATTGAGCTACAGTGAAACTAAAGCTAGTATGTGACACAATTATATCATCCTCATTTTCAAGCTCCTGTGGTGGCCAAATACATCCACTTCCTTTCCATACTAATTATTTACTGCTATCTAGAGTTTTAAATGATTTCTTGATTGGGCACCAAATCAGGAAACTTGTTTGGCACAACTTTCACCCCAAAGAAACTGTCACTCATACtgcataaaaaaaacattcaagCCTACTGTAGCCTATATCATATCTGGACTAGGATGCAGTGCACATCTTCACAATCAAGTTAAGTGGTCCGGATACAGCCATGCCGAGATACAATGACTTCCTTCATAGGGATATGTGACCCTTTGATTTGCAAATACTGATAGTGACAGAAATCTTCATTTAATCTAATTTATCGGTGTACCCCATGGTAGGCGTACTTCAGATGTTAGTCTTTAATTCATATGAATGCATTCGTGTCATTTTCATGTAATAAATGATCAAATCATTTCAAAGTAGCAAATAACATAAAACAATAGACAAACGCTACTTTGTTCCAGCTTTGGCTGCACAACAGGGATACATGCATAATGTTATACAACAACGACGACTGGACCAGTCTTGAATTTCACAGGCGTAGAATATTGTTTGGTCAATGGAACTGAAACAGCTCCAAGCAGATGTACATGTGATCACTGacccactcaggaaggagaagaaCCAGTATGAGTCAGAAGAAAGagattcactctctctctgacaacATCCAAAATGCCGTGTAAACTGCTAAATCTATGTGAGTATGAAACACATAAACTGGTCCGAATACAAAGTGCAAGGCTGGGATCGCTGAAATGGACATTTAACGGAGTCATACTGATGTTCATCTGCATTGTAATGTTCTGGAACAAGGAGTATCAAGAACACGACTATGTGGTCAGCTCTGTTACTGCTAAGGTCAAGGGAGTGGCCATGACCAGCTTGCCAGATGTTGGTGATATAGTATGGGATGTTGTAGATTACAGTGGGCcatcacagGGAAAGAATTCATTTTTCGTGGTGACCAATGTCATTGTTACAAAAAATCAAAGGCAAGGAAAATGCCCTGAGGTCCCTCCTTACGGAAAAGTGTGTTGGACAGACAAGGACTGTGTGAAGGGGTTCTGGGAACAGAACAGCCACGGGGTTCAGACAGGTGCATGTGTGAAGTTTGATGTAAAACAGAAAACATGTGAGGTGTCTACATGGTGCCCCATAGAAACCAAGAAAACGCCCCCCAAGCCTGCTCTCTTGGCATCAGCTGAGAACTTCACAGTCCTCATCAAGAACAACATCAGATTCCCAAACTTTAACTTCATTAGAAGGAACATCCTCCCTGAGATGACGGACAGCTACCTGAAGCACTGCCAATTTAACAGGCGTACAGACCCCTGGTGCCCCATCTTCCGCCTCGGGGACATTGTGCAGGAGGCCAGAGAGAACTTCTCAGAGATGGCAGTTGAGGGTGGCGTCATTGGGATCCAAATTAAATGGGATTGTAATCTGGACGGGTTCTTGCGGAACTGTCTGCCCAAATACTCCTTCCGCCGGCTGGATGAGAAGGAGAGCAACAGAACTCTGTCCCCTGGTCTCAACTTAAGGTTTGCTAGATATCAGACAGAAAAAGGTGTTGGGGAGAGAACCCTGTTTAAAGCGTTTGGGATCAGGTTTGATGTCATGGTATTCGGAAAGGCAGGAAAATTCAGCATAATCCAACTGATCATCTATATTGGATCAACTCTATCCTATTATGCACTGACCACTTTATTCATTGACTGGCTCATTGGGACCAGCTGCTTCTCTAAAGAAGCCAGACAGAACTACTCAGAGAAAAAGGTTGAATCTGTTCAGGACAGACAACAGTGCATTCTTTGTGTCTCGTTTGTGGATGAGAACCATATAAGAGTGGTGAAAAGATCACATAGGAAAAGTTTACAACAAGTGAAGCCCATGTCCGTTCACCCATTCAAGGACGACATAAGGCACCTGAGTGCCATGGCTGGTGTATTGCAGAAAGGGCACAGCATAGACAAGCAGCCCCAGGCTCTCCCTCGGCCCAGCTGTCCAGCTTGGTGTCTGTGTGGCTGctgcctcccctccacccatccccAGGAGCAGCTGTGCTGCAGGATGAGCAGAGGTCGCTGCATCACCACCTCCTCCTTGTTTGAACAGCTGGTGCTGAGTCGGCCCTTATTGGAGGCAGTGTTGCTGTACAGGGAGCCTCTTTGTGAGCTGACCGAGGGGGAGCAGTGGACCACCGCCATGCGCCACTGTGCCTACAATCAGTATATCACCTGGAGATTTGGGGCCCCACCCAGAGAAAGCCTCCCTGTCATACCCAGTTGTAGTGTGTGGAGAATCAGAGAGGAATACTCCAGCCAAGATGGAGAGTACACTGGCATGAGACCCAGAAGAACTACTTCTCCCCAGTCCAGCCCTAACACATAGCTTTAGggaagagggagagtcagtgTTCTAGAAAGCAGTGTTCTATATAGAAATCAGAGACTGGTCCTCATCATGTAACAGCTGTCTCATGCATTTGTACTGGTGTATTTATCTAATCTTCCATTCTGCATTAAGGTTGACATTTTCAACTTGATCATTATTCTCGCCTATAGATATTGTGTCTATCCATCCCACTGTCTAGAGACCATGAATGATTAaaagggctcccaagtggcgcagcggtctaaggcattgcatctctgtgctagaggcgtcactacagaccctggtttgaatccaggctgtatcacaatccgccatgattgggagtcccatagggcggtgcacaaatGGCCCAGCGTTGTTCGGGTTTGGCTGGtatgggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggtacaatttaaaaaaatatatacagtgggg

Function

NR:

description
P2X purinoceptor 4-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0035590 purinergic nucleotide receptor signaling pathway biological_process
GO:0006812 cation transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG:

id description
K05220 P2RX7; P2X purinoceptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605684.2 True 3898 mRNA 0.43 13 22759441 22766009

Neighbor

gene id symbol gene type direction distance location
gstt1a LOC106585460 coding upstream 1921 22754269 ~ 22757520 (+)
LOC110525510 LOC106585458 coding upstream 32278 22721634 ~ 22727163 (+)
LOC110525507 LOC106585456 coding upstream 38114 22692800 ~ 22721327 (+)
LOC110525503 LOC106585452 coding upstream 103058 22646328 ~ 22656383 (+)
LOC110525504 LOC106585454 coding upstream 114548 22640897 ~ 22644893 (+)
LOC110525516 LOC106585462 coding downstream 10917 22776022 ~ 22781759 (+)
LOC118964854 LOC106585477 coding downstream 44712 22810721 ~ 22814092 (+)
LOC118964852 LOC106585477 coding downstream 52315 22818324 ~ 22823007 (+)
LOC118964853 LOC106585477 coding downstream 61074 22827083 ~ 22831756 (+)
LOC110525522 LOC106585477 coding downstream 66321 22832330 ~ 23332415 (+)
G486159 NA non-coding upstream 8317 22750913 ~ 22751124 (+)
G486154 NA non-coding upstream 12771 22746262 ~ 22746670 (+)
G486151 NA non-coding upstream 14424 22744652 ~ 22745017 (+)
G486150 NA non-coding upstream 15004 22743836 ~ 22744437 (+)
G486147 LOC106582599 non-coding upstream 19514 22739696 ~ 22739927 (+)
G486246 NA non-coding downstream 186644 22952653 ~ 22953950 (+)
G486313 LOC105902522 non-coding downstream 294980 23060989 ~ 23062352 (+)
G486312 LOC107567955 non-coding downstream 296727 23062736 ~ 23064014 (+)
LOC110525520 LOC106585478 non-coding downstream 415344 23181353 ~ 23227167 (+)
G486127 NA other upstream 84989 22674242 ~ 22674452 (+)
G485780 NA other upstream 314822 22441316 ~ 22444619 (+)
G484726 NA other upstream 1205344 21553732 ~ 21554097 (+)
G484674 NA other upstream 1292536 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1796115 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 424623 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 762731 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 887111 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1145812 23911741 ~ 23914297 (+)
G488049 NA other downstream 1813952 24579961 ~ 24586313 (+)

Expression


Co-expression Network