LOC118964854 (LOC106585477)


Basic Information

Item Value
gene id LOC118964854
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22810721 ~ 22814092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979657.1
CCAGCTGCACAGACCTGACACCTGTAACCTCCACTGCCACAGTGATTGTTAAGGCATTTGTGGGAGGCATGGAGACGATAGCATCATTTGAAGGCACATGTGAAGCAGTTGATTGGCCAGTTCCTGTAAAGGACCACAAAACAGGATCTTCACAGATGATAACCTTCTCTCTAGCCCGCACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACTTAGTAGAGTTCCCAGTGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaaGTGGAGAGTAAATCCTTGGCCGTTGTCAGTTCATCTGATGAGTCCCTAGAGGCTTGTTGGTTTGTTGATGGTGTCCTATCAAAGCTCGATGACTATACTATTTCCCAATCACCCTCACCCAATGAAGACTTGAGCGTGAGTACTCAATATTCTCAACTGAGctcagaagagagtgtcagaatCACAGAGTCCTCTACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTCCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGTGACTCTTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGGTTCGCAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGACCATCTGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCACCCGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATGAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGAGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCTTTTCGATCTGACCTGCCCCATCGTCAGGAGCTCCTTCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACGATCCTCCACTCCTTCTTTCACAAGCAAGGGAACCTCTTTGGTACCAAAGGGAGATGGGATTGACATTGAAGAGAAGGAAGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTgcattcccactgcagtacttgatGGACTCCAGCAAAGATGATGTCATCTGTTTGGTCACCATACTGGTGATAAGGTTGCTATCGGAGATCAGACCCTCAGCCCTAGATGGACCCTCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACAAAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCGGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGctccagttgGAGAGgattctccctccatatctcagccTGTCAAAAAACAATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTCTTAAGCTGCATGAAGATCTACTTTTGTAACAGCAAGACTTTTGAAAAGAGGAATTTCTGCATGTCTACCCTTTCaaagtctatttgatcaaataaatgcaaattattttacaagaatttcaagtgttttggaagattAGTAAAACTGAAGCAGCTTTTCTCAGAGAAATGCACTAGTTCTCCCTTGGTTACACATTTATTGTGCAGTTTTTGAGTTGGCAGgacttggggcagcaggtagccttgtggttagagcgttgggccagtaactgaaaggttgctaggtcagatccctgagctaaccatgtaaaaatatgacgttctgctcctgaacaaggtagttaacccactgttcctaagctgtcattgtaaataagaatttgttctgaactgacttgtctaggaaaataaataaaataaccacaGCTTGACTCTAATACAATAGTTGCTGCATAGACTGTCAGATAACCAGATGTCTATGCATTTAGTTCGATTGGTAAGAGCTTATTAGCAGCAAGGGGAAAACACATAGAGGAGAATTAGCTATCTGCAGCTAGATGTTTTGTATATGTTG

Function

NR:

description
uncharacterized protein LOC110525522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979657.1 True 2997 mRNA 0.46 3 22810721 22814092

Neighbor

gene id symbol gene type direction distance location
LOC110525516 LOC106585462 coding upstream 28962 22776022 ~ 22781759 (+)
LOC110525512 LOC106585461 coding upstream 44712 22759441 ~ 22766009 (+)
gstt1a LOC106585460 coding upstream 53201 22754269 ~ 22757520 (+)
LOC110525510 LOC106585458 coding upstream 83558 22721634 ~ 22727163 (+)
LOC110525507 LOC106585456 coding upstream 89394 22692800 ~ 22721327 (+)
LOC118964852 LOC106585477 coding downstream 4232 22818324 ~ 22823007 (+)
LOC118964853 LOC106585477 coding downstream 12991 22827083 ~ 22831756 (+)
LOC110525522 LOC106585477 coding downstream 18238 22832330 ~ 23332415 (+)
ift81 LOC106585468 coding downstream 121316 22935408 ~ 22957089 (+)
LOC110525525 LOC106585469 coding downstream 146793 22960885 ~ 22992185 (+)
G486159 NA non-coding upstream 59597 22750913 ~ 22751124 (+)
G486154 NA non-coding upstream 64051 22746262 ~ 22746670 (+)
G486151 NA non-coding upstream 65704 22744652 ~ 22745017 (+)
G486150 NA non-coding upstream 66284 22743836 ~ 22744437 (+)
G486246 NA non-coding downstream 138561 22952653 ~ 22953950 (+)
G486313 LOC105902522 non-coding downstream 246897 23060989 ~ 23062352 (+)
G486312 LOC107567955 non-coding downstream 248644 23062736 ~ 23064014 (+)
LOC110525520 LOC106585478 non-coding downstream 367261 23181353 ~ 23227167 (+)
G486411 NA non-coding downstream 437478 23251570 ~ 23260565 (+)
G486127 NA other upstream 136269 22674242 ~ 22674452 (+)
G485780 NA other upstream 366102 22441316 ~ 22444619 (+)
G484726 NA other upstream 1256624 21553732 ~ 21554097 (+)
G484674 NA other upstream 1343816 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1847395 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 376540 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 714648 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 839028 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1097729 23911741 ~ 23914297 (+)
G488049 NA other downstream 1765869 24579961 ~ 24586313 (+)

Expression


Co-expression Network