LOC118964852 (LOC106585477)


Basic Information

Item Value
gene id LOC118964852
gene name LOC106585477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22818324 ~ 22823007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979652.1
cctccccagaatcccagtgctctctgacagggtctgaggattccttaggcagtctggatgagagagagaaaaggctgctgatcagtgagatgaactactggactaaggagaggaggaggaatggcagtGCAGGGTTCCGCCAAAAATCCACTCGCAGAACCTCATCACCATGCTGTTCGCCTAAGAGGTCCCAGACCTCATTGCAGAGCTTGCCTGCAACTAGAGAGGCTCCCCTCATGGAGGAGCCTCTTAAGGCTCTTTTTGGGGTAACGGAAGAGAGCCTCCTGATATCCCTGGTTGAGGGTCACTCCAACCccatctcctccagctcttctgaGTTGAGCTGTGCTATTGTGGGAGAGGTAGTACACCAGCTTAACTCTGGCCTCTCAGTGGCCATTCAGGCCAGCTCAGGGAGTTGCCCCCCTATGGACAGTCAGGACATAGCAGTAGGCAAGGAGGTCATTCGGGTAGCCTCGGTGCAGATCCTGGCCGAGCTACAGAGCCAAACGTCTGAGCCAGAGTGGGTAGGGTTTATCGAGCCCCTCATGGACCCTGTGACCGATGATGTGCTGGATGCCATTGTCGGCACAATGGACAAAATGGCACAGGACTTCAACATCCTATTGGATCTGGCCAAGAAGATGACAATCTTGGGGTCTAAATTTCTGACCAATCTTCAATGTGACCTTGATGTTGAGTGTCCATCTGGGAAAGAAGGGACCACTCACTTTCTCAAAGAGACTGGATCCTCTACCAGTGTGGTGGCCAGAAAGCTTCAGACCCTCTCTAGCCCCGACTTTCAGTCTAAAGCCCTGAAGGCGGTGAGCACCATCCTTACAAGGAAAGTCAGCAGCTCTTCTGGCATGGATCCTTCCTCTAGGCCTTCTAGTGCTGCACCTAGCCTTACTGAAGCTCCCCTGAATACCAGCTGCACAGCCCTGACACCTGTAACCTCCACTGCCACAGTGATTGTTAAGGCATTTGTGGGAGGCATGGAGACGATAGCATCATTTGAAGGCACATGTGAAGCAGTTGATTGGCCAGTTCCTGTAAAGGACCACAAAACAGGATCTTCACAGATGATAACCTTCTCTCTAGCCCGCACACTCTACGGCCGTATACGAGCAAAGCTGAGGGACCTTTTAACTCTATCCGCTCGAGAAGAAGGTGTGGCTAAGGATGCTTCTCTTCAGGAGTCTTCAGACACCCTGGAAAAGGCAACTGTTTCAACTGTTGAGGTCCAGTTACCCAGCACCGAACTTAGTAGAGTTCCCAGTGAGAGCCAACcaataccagctctctgtctctccaatctggataccagtactcaagaagttcttagcagtgttttttccatctacaagtcagagttatcaaaagtggagagtaaatccttggccgttgtcagttcatctgatgagtccctagaggcttgttggtttgttgatggtgtcctatcaaagctcgatgactatactatttcccagtcaccctcacccaatgaagacttgagcgtgagtactcaatattctcaactgagctcagaagagagtgtcagaatCACAGAGTCCTCTACTAGTCTGATTCAGAGCATTAAGAAGCTCTCTAGCAATGACTTCCAGACTCAGGCAGAAGAGGCAGTGAGTAAAGTGCTGATGAGATCCAGTCATTCCTTTATCACACAGATCAGCCATACTGGTCTTCAGAAAAGTCTGCAGGCTGGCTTATCATCTAGCTCACCATCAGAGATCCATGTCCTTTCAGAATCCATGTCCTCCATGTCCTCTGAGAATACAGCCTCTGGATTAGTGGAAACCTTTGTCAAAGGAATGGCGACTATTTTCCAGAAAAATGAGTCCACTGACACTGTGCTACTGGAAAGAAGTGGGAGAGTTTCGCAGTGCTCCCACGGGGGCTCCCAACTGGATGATACTGAATTGAGTGTTAAAATATCAGAGGAGAAGCTTTGGTCAACAGCTAAGACCATATGCGTCAGTATGAAGAACACACTTAAGGATTTCTTCACAGGGCTGAAGCCACCCGGATCCGAAAGGACAGAAAATGCTTCTTCCAAAGAGACCCTTGGGGAAATCCTGGTTGCTATCCAGAGTGAAATCTCAAACTTAGGGCGAATTAAGGATTCCAGGGAGCTCCTTCAGATCAATGATATGGTAGGAACTATGCTGAAGGAGGttgagaaaagtgaggatgacAGTGAACAAGTCTGCCAAGACATCCCTAGAACCTGTTCATCTTTGTCCACTTCTTTAAATGGTCGTAGTTCCTTGTCCAGCTCTTCAAAGAGTCCTAGGTCAGAGTGTGAGTTAGAGATCaacctccctggcactcccatcccTGACGAAGTGCCTTTCGATCTGACCTGCCCCATCGTCAGGAGCTCCTTCATCGACACCAGGGTCTCTAAAATGCCAGATATTTCTTCAAGTGACCTAAAGACAAAGATGATGGCACACACAGATGAACGATCCTCCACTCCTTCTTTCACAAGCAAGGGAACCTCTTTGGTACCAAAGGGAGATGGGATTGACATTGAAGAGAAGGAAGAGTGTATCCCCAGCAGCTCTGGCCATCTGAGGGAGCTCTTAATCACCCCGGACATCAGCAGTGCCACTGCATTCCCGCTGCAGTACTTGATGGACTCCAGCAAAGATGATGTCATCTGTTTGGTCACCATACTGGTGATAAGGTTGTTATCGGAGATCAGACCCTCAGCCCTAGATGGACCCTCCCAACAGGCAGCAGATCTGACAGAAACATCTCAGCAACTCATCAGACAagtcctgtctgagttctgtgctgCATCCAGATTCTCCAGGACAAAGGCATATTCCCAGAACCTGAACATCCAAAGGGTGTTCAGAGGTGTACATAAAAACCTCATGGAGGAGTTTGGCTCTTATAACACCCTGCAAGCAGCTATTTCCTCCCAGGACCCTGCATTTGACAGAGTCCTGGTAAAGtccttgacccagcagctggtacagggatgcaaggaggcgtcaagaccagcttctgctgcaacaaacccatcagaccaggctgagacagagaggggggctgagcagaaagcaagaaggagcttcctttgcttttcaatgaccaaactcaggatcaacttcaagCGTTCCAAGAGAGGAAACAAAAAGGACTGCCATTCAGTCCAGGAACAGACTGAGATTCCCTCTACTGATGGACATTGCATAGctccagttgGAGAGgattctccctccatatctcagccTGTCAAAAAACAATCCTTGATTGTCAGGGTCTTTTCAGCAATGATGAAGCCATTCAGGCGCTTCACCAAGAAGAACCTGTAACCTCTTAAGCTGCATGAAGATCTACTTTTGTAACAGCAAGACTTTTGAAAAGAGGAATTTCTGCATGTCTACCCTTTCaaagtctatttgatcaaataaatgcaaattattttacaagaatttcaagtgttttggaagattAGTAAAACTGAAGCAGCTTTTCTCAGAGAAATGCACTAGTTCTCCCTTGGTTACACATTTATTGTGCAGTTTTTGAGTTGGCAGgacttggggcagcaggtagccttgtggttagagcgttgggccagtaactgaaaggttgctaggtcagatccctgagctaaccatgtaaaaatatgacgttctgctcctgaacaaggtagttaacccactgttcctaagctgtcattgtaaataagaatttgttctgaactgacttgtctaggaaaataaataaaataaccacaGCTTGACTCTAATACAATAGTTGCTGCATAGACTGTCAGATAACCAGATGTCTATGCATTTAGTTCGATTGGTAAGAGCTTATTAGCAGCAAGGGGAAAACACATAGAGGAGAATTAGCTATCTGCAGCTAGATGTTTTGTATATGTTGAAAATATGTTGAAAATA

Function

NR:

description
uncharacterized protein LOC110525522

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979652.1 True 3941 mRNA 0.47 4 22818324 22823007

Neighbor

gene id symbol gene type direction distance location
LOC118964854 LOC106585477 coding upstream 4232 22810721 ~ 22814092 (+)
LOC110525516 LOC106585462 coding upstream 36565 22776022 ~ 22781759 (+)
LOC110525512 LOC106585461 coding upstream 52315 22759441 ~ 22766009 (+)
gstt1a LOC106585460 coding upstream 60804 22754269 ~ 22757520 (+)
LOC110525510 LOC106585458 coding upstream 91161 22721634 ~ 22727163 (+)
LOC118964853 LOC106585477 coding downstream 4076 22827083 ~ 22831756 (+)
LOC110525522 LOC106585477 coding downstream 9323 22832330 ~ 23332415 (+)
ift81 LOC106585468 coding downstream 112401 22935408 ~ 22957089 (+)
LOC110525525 LOC106585469 coding downstream 137878 22960885 ~ 22992185 (+)
LOC110525533 LOC106931442 coding downstream 179731 23002738 ~ 23007312 (+)
G486159 NA non-coding upstream 67200 22750913 ~ 22751124 (+)
G486154 NA non-coding upstream 71654 22746262 ~ 22746670 (+)
G486151 NA non-coding upstream 73307 22744652 ~ 22745017 (+)
G486150 NA non-coding upstream 73887 22743836 ~ 22744437 (+)
G486246 NA non-coding downstream 129646 22952653 ~ 22953950 (+)
G486313 LOC105902522 non-coding downstream 237982 23060989 ~ 23062352 (+)
G486312 LOC107567955 non-coding downstream 239729 23062736 ~ 23064014 (+)
LOC110525520 LOC106585478 non-coding downstream 358346 23181353 ~ 23227167 (+)
G486411 NA non-coding downstream 428563 23251570 ~ 23260565 (+)
G486127 NA other upstream 143872 22674242 ~ 22674452 (+)
G485780 NA other upstream 373705 22441316 ~ 22444619 (+)
G484726 NA other upstream 1264227 21553732 ~ 21554097 (+)
G484674 NA other upstream 1351419 21464139 ~ 21466905 (+)
LOC110525116 adamtsl2 other upstream 1854998 20958755 ~ 20984618 (+)
LOC110525518 LOC106585474 other downstream 367625 23079630 ~ 23197514 (+)
G487078 LOC106585486 other downstream 705733 23528740 ~ 23531799 (+)
G487146 LOC106585492 other downstream 830113 23653120 ~ 23667927 (+)
LOC110525563 LOC106585507 other downstream 1088814 23911741 ~ 23914297 (+)
G488049 NA other downstream 1756954 24579961 ~ 24586313 (+)

Expression


Co-expression Network