LOC110525180 (hps4)


Basic Information

Item Value
gene id LOC110525180
gene name hps4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23582127 ~ 23587892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525180
ATGGCTGTGAAACACTTTGGAGAAAATTCTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAAGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACGAACAATGCCTAAATGTACGTTTTCATGAAATGTAAGATAGCTGGACTGTCTACGTACGTAAATATATCAAAATAGAAAGTAACATCGGTTTCTGTTCCTAGTGTCCTGGAAATAAGTAGTCTCGAAAACCCAACCCTAAGCCGTAATCACTGTTGCCTATGGTTGGGTTTTCGAGACTATCAAATGAGACCTTTCTTGATGGTCCAAATATAGTGTAATTAGGGTCATTAGATACGCGGTAGCTGAATTTGAATGACTGGAGTCGGTGTTTTCGGAGTGCCTTATTATGCAAACTCATTTTATGGGTCAGTGGGGTGCAGATGGGTAGTTAGGGGCACGAACAAAACAGGGGGGTGGAGAAACAGAATTAAAATTCTAAGTGGCAGAATGCCCCATTGTCAGTGGAGGGGCATACCCTATAAACCACGCAGATAAGCGGTCTTTTTCAGATACACCGCACCACTGGACGGAGCTGGTACAACTACGGACCCATCACCATGGCTTCTACCACATGCTCTTGGATTGCCTTAATGTTCTTATCTGTGTCTACTAATTTCATTGGAGTACAGTGTCGCGCGGTGCAGGAGATACTGTCAAAGTCCTCCGCTTTTCAGGATGGTCCCAATACTTTACCCACAGATATCTTGAGACGATGGCGACGGGAGAGCGATGAGACGCAGCGGCAACATTGCGCAATGTTGTCAGCGCCTTGGATGGAAACCAGCGCGTACCCGATGGAATTGGCACTGCTACATCGTCTCCGGGTGCGTTCAATGGCCCAAGGAGGTTTACGGCGCACAGTCTTTCCTGAGCAACCACTATTTCATTTTGTCAGACGCGTCTATCATTGCTGCCAGTTAGGTTTTCATTGCCGAGGCGTCAAAGGGATTCAGGGCAGTATCAGTGGAG
>TU554037
CTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAACGTTGACCTTACTGCTGGAGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACGAACAATGCCTAAATGTACGTTTTCATGAAATGTAAGATAGCTGGACTGTCTACGTACGTAAATATATCAAAATAGAAAGTAACATCGGTTTCTGTTCCTAGTGTCCT
>TU554033
CTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAAGTGAGGCTCTAATATTCTCAGAGCTCTCTGAAATGTTGTCAAACCACGGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACG
>TU554039
CTGCAGCCCACAGGTTCAGCGGTGAGGAGTCTCGAGAGCCTGGCAGTCAGAGGATGGGGAATCCCGGAGATAAGGCGTTTAGGGTGAAGGAACGACAGGGGAGTTAAGTCCAGCAGGTTGCttgccccctgcctcccccttcccTGTGAGAACTCTACAGATGCCCCTTTGCTCCCCACGGCACTGTACCAGCACAGGGTGAGAGGGCTGGTACTGGCCCTACTGGTAGAGAGACAATTCCAAAGCGACACTGCAGCCACAGAGGAAGTGTATCTCAGAAGCCTGGCATCTTCGAAGGGACTGGAAGCACATCTGAGGACTACTGCTCCGGGGGCCTCTGGCCCTTAGGGACACTACACACTGACTGTATACAGAACATGCTCACAAGCAACCTGTCTGGTAGGCCAGGGGGAGCCCAGGACCGTTCTTTTGTGAGAGCCACATCGCTGCTCCACTCGCATTTCTCTCACACTGAAGCTCTGCAGGAGGCTATTGTCAGGAGTGCGGGTGCAGCTGTGTACGGGACCCGCAGTGTGGCCCAGGAGACGTACTTCCTGCAGCAAGGCAGAGCGGTGAGAAACTCTGGCATTCCCGACCACCAGGACAATGCTTTCTCTCTGCCTAGCAAGGCCCGACACAGGTTACTGAAGCACAGGGTTAACCTGCTCTGACTGACTGTGACAAGGAGTTCCACCAGAACCACTGTCTACTCAGTCACTTCTCTGAATATGCTTCTCTCTAAATTCATTTCAAACAATGAACTTACACTGAACATTTTTCTAAGATAAACACTGTGTAAAGAGTTTTAGGAAGTTAAACGATTTACAAGAACCTTGGTCAAGTCCTATACTGTTTTGTATTGATGTGCAGAGGACCATGATCTCTGTCAACACTGCAAAGGCATTTTGCACAATATATAATGAAATTCCAAACCAACACACCACATGAAATATGAGCTTATAGAGAGAGATGTTGTGTAACAAATATTCAATGTACAAACATCATGAAGACACCATGGCTGCCGGGTTTCCTAATCACTGTAATCCTTTTCATTTGGATAAAGATAATCAGCTACCCGTGAATCCTTCACCACCACCCACAATGTATTTACAAAAAGAGTTATTATGTTGTACCTAATGACATACCGTATGTAGGAAAAACGTATTGTATATAATTACAGATATCATGTCATATTGTTTGTGTAATATTCTGTCCTGAGAATGTACTCTTGGGTTTTCATTGTAGAGTTGATTTTGACCACCTCTGAAATCAAGCCAAAAGCCATTGAATACACTAAATGTGATACTCTCTGATTAATGGGGCACATGAATCATTTGCCAATAATATTCCGTAAGGTTCTTTACAAAGATTGACTATGtttgtaacaacaacaaaaataatgaaTGGCTGATTCTTAACACACAAAAAATGCCTTGGTCATAAGGCAAGCATTTTCCTTCCAAGcattgcaaatacattcattcaaATATGATTATTTAAACATATCCACTCTAAATTAACACCGATGTATGGACCTTGTCTTGTCTAAATGAGCTGCACATTGTACTCTAAACTACAGGGGCCATCGTGGTCCCTATAGTGCCATAACGATAGTAGTACTGTAGCAACAGGCACACAGCTCAAGCTAAGCATAAATACGGCGCCCACAGTACTTTACAAACCCTAAAGTACGAACACTGTTATCATGGTAATTATATTGCTTTGGGTGAAGGGGACG

Function

symbol description
hps4 Predicted to contribute to guanyl-nucleotide exchange factor activity. Predicted to be involved in melanosome assembly and protein targeting. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be part of BLOC-3 complex. Predicted to be active in cytoplasmic vesicle and lysosomal membrane. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome; Hermansky-Pudlak syndrome 4; and schizophrenia. Orthologous to human HPS4 (HPS4 biogenesis of lysosomal organelles complex 3 subunit 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525180 False 2675 mRNA 0.45 5 23582127 23587892
TU554037 False 1864 lncRNA 0.44 5 23582929 23585554
TU554033 False 1786 TUCP 0.45 4 23583036 23585554
TU554039 True 1738 TUCP 0.45 4 23583036 23585554
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525541 rnf10 coding downstream 21325 23550291 ~ 23560802 (-)
si:ch73-138n13.1 LOC106585486 coding downstream 31974 23510610 ~ 23550153 (-)
LOC110525017 LOC106585484 coding downstream 72611 23507373 ~ 23509516 (-)
LOC110525016 LOC106585485 coding downstream 84787 23494704 ~ 23497340 (-)
LOC110525539 NA coding downstream 89315 23490534 ~ 23492812 (-)
LOC110525543 LOC106585487 coding upstream 338 23588230 ~ 23590352 (-)
pla2g1b LOC106585490 coding upstream 18457 23606349 ~ 23607826 (-)
aakb1 aakb1 coding upstream 26975 23614867 ~ 23617686 (-)
LOC118965070 LOC106585337 coding upstream 34915 23622807 ~ 23643348 (-)
LOC110525548 LOC106585492 coding upstream 57103 23644995 ~ 23668368 (-)
G487495 NA non-coding downstream 7492 23574387 ~ 23574635 (-)
G487493 NA non-coding downstream 9397 23572489 ~ 23572730 (-)
G487491 NA non-coding downstream 11852 23570050 ~ 23570275 (-)
G487489 NA non-coding downstream 16956 23564932 ~ 23565171 (-)
G487474 NA non-coding downstream 17636 23563807 ~ 23564491 (-)
G487501 NA non-coding upstream 2772 23590664 ~ 23591057 (-)
G487503 NA non-coding upstream 6061 23593953 ~ 23594154 (-)
G487504 NA non-coding upstream 6813 23594705 ~ 23594983 (-)
G487529 NA non-coding upstream 86037 23673929 ~ 23674146 (-)
G487538 hnf1a non-coding upstream 109326 23697218 ~ 23699515 (-)
G487016 NA other downstream 190065 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 196220 23385534 ~ 23385907 (-)
G486953 NA other downstream 328766 23251286 ~ 23258106 (-)
G486716 NA other downstream 741561 22837653 ~ 22840566 (-)
G485877 NA other downstream 1301101 22280726 ~ 22281026 (-)
LOC110525552 LOC106585495 other upstream 125983 23713875 ~ 23717830 (-)
G488386 NA other upstream 765641 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 1073005 24655788 ~ 24715090 (-)
G489038 NA other upstream 1518313 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1909071 25496963 ~ 25497489 (-)

Expression

LOC110525180(hps4) Expression in all Baseline Samples

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LOC110525180(hps4) Expression in each Bioproject

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LOC110525180(hps4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network