asgrl1 (LOC106585488)


Basic Information

Item Value
gene id asgrl1
gene name LOC106585488
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23596212 ~ 23606381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605740.2
caaacacaactTTGAACTTTTGGTCAAATACCAGAAGAAGACTGGACAGACTGATAGATCAGCTGAGAGGTGTTCACATTTCCATGAACATAACAGGAGTGAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGACCCAGCTACTATCAACCATAACTATCATGATGAATTTCAGCTTCCAGTGATAGGAACTTGTAATGAAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG
>XM_021605742.2
caaacacaactTTGAACTTTTGGTCAAATACCAGAAGAAGACTGGACAGACTGATAGATCAGCTGAGAGGTGTTCACATTTCCATGAACATAACAGGAGTGAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGGAACTTGTAATGAAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG
>XM_036979676.1
caaacacaactTTGAACTTTTGGTCAAATACCAGAAGAAGACTGGACAGACTGATAGATCAGCTGAGAGGTGTTCACATTTCCATGAACATAACAGGAGTGAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGACCCAGCTACTATCAACCATAACTATCATGATGAATTTCAGCTTCCAGTGATAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG
>XM_036979675.1
CTATTACCTTAAAACACAAGAGCTCCTATCACCAAACTGTCTTTTCATTTGCTTTACTGTCCTGGCACGAATAAATTCACTACCACAGCACAGGTTAATTTGGGACATTTGAACTTTAGATGCATTACGTATTACCAGCTTTTCTATCTCTAAATTGCAAATGTCTGGACGCGATGAGTGACATGTTTCATTCTGAGTCAGGGCATACAAAAGCACTAAAGACCTCCGTTCATTTTCAAAATGGAAATCTCTCCTCCAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGACCCAGCTACTATCAACCATAACTATCATGATGAATTTCAGCTTCCAGTGATAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG
>XM_021605741.2
TATTACCTTAAAACACAAGAGCTCCTATCACCAAACTGTCTTTTCATTTGCTTTACTGTCCTGGCACGAATAAATTCACTACCACAGCACAGGTTAATTTGGGACATTTGAACTTTAGATGCATTACGTATTACCAGCTTTTCTATCTCTAAATTGCAAATGTCTGGACGCGATGAGTGACATGTTTCATTCTGAGTCAGGGCATACAAAAGCACTAAAGACCTCCGTTCATTTTCAAAATGGAAATCTCTCCTCCAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGGAACTTGTAATGAAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG
>XM_021605739.2
TTACCTTAAAACACAAGAGCTCCTATCACCAAACTGTCTTTTCATTTGCTTTACTGTCCTGGCACGAATAAATTCACTACCACAGCACAGGTTAATTTGGGACATTTGAACTTTAGATGCATTACGTATTACCAGCTTTTCTATCTCTAAATTGCAAATGTCTGGACGCGATGAGTGACATGTTTCATTCTGAGTCAGGGCATACAAAAGCACTAAAGACCTCCGTTCATTTTCAAAATGGAAATCTCTCCTCCAGAAATGGATTCCATTCAGTATGATCAATTTGGTACGTCTGACATTGAAAGTAACCACAGTCGGAGGAAAATCATCCCACAAAGAGGTATGCAGAGCAGGGTGGTTCATCTCCTGTATGGTGTCTTGGTGCTTCTCCTGTTGATACTACTGCTGATAACTGGACTTAAATTCTCTCAGTTAAACCAAGCGATAGTTGATGTCCATCTTTACCTTGAGTCCCTGAACAAGACTGTGATAAGTGCTTGTGCCACATCTTCCAGTTCAGACCCAGCTACTATCAACCATAACTATCATGATGAATTTCAGCTTCCAGTGATAGGAACTTGTAATGAAGAATGGTGGTCCTTCCAGGATAGCTGCTACCTGGCATCAAAAAGGAAGCTCAACTGGAAAAGTGCAGAGGAAAAATGTATTGAGCTGGGAGCACACCTGCTTGTTCTTAACAGTGAGGATGAGCTGGACTACATCTCTCAAATGATTGATGCAGGAAAGAGATACTGGGTTGGGCTTGTGGAGAGAGCACAAGAGGGCCACTGGACCTGGGTGGATGGAACTGACTACAAATCAACTCCACACTTCTGGGATAAAGGGCAGCCAGACGACTGGCAGGTTGGTGTGATTGGAGAGGACTGTGGACAGCTTCATGACGGTCCACACAGACAACGCAAGCTTTGGAATGATGCAGACTGCAGCCTAATGTACAATTACATCTGTGAGGCAAAGGGGAAATGAGAAACAGTAGACCCATGCTTGCCATTGACACATGAGCTGTAAGCTATGCCTGTGCTGCCCGACTGATATAACATGACAGTCTCAGGATACAGGAGAAAGGATGGATTTCTTTCAGTGACTGTACAACAATCACAAATAATGGTATTGAGCATAAGAAGCACACAGTGTATAACGTGAGCTTATTCACAGAATAAAGTTTAATTAAACCTTG

Function

NR:

description
CD209 antigen-like protein C isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605740.2 False 1045 mRNA 0.44 8 23596212 23606381
XM_021605742.2 False 991 mRNA 0.44 7 23596212 23606381
XM_036979676.1 False 1030 mRNA 0.44 8 23596212 23606381
XM_036979675.1 False 1186 mRNA 0.43 7 23596680 23606381
XM_021605741.2 False 1146 mRNA 0.43 6 23596681 23606381
XM_021605739.2 True 1198 mRNA 0.43 7 23596683 23606381

Neighbor

gene id symbol gene type direction distance location
LOC110525542 NA coding upstream 25560 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 203404 23359077 ~ 23392808 (+)
LOC118964855 LOC106585477 coding upstream 276091 23312041 ~ 23320121 (+)
LOC110525581 LOC106585477 coding upstream 287921 23305581 ~ 23313220 (+)
LOC110525520 LOC106585478 coding upstream 370426 23181353 ~ 23227167 (+)
LOC110525547 LOC106585491 coding downstream 2292 23608673 ~ 23609827 (+)
LOC110525549 hnf1a coding downstream 71093 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 185063 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 235094 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 251473 23857854 ~ 23884968 (+)
G487125 NA non-coding upstream 2562 23593389 ~ 23593650 (+)
G487124 NA non-coding upstream 3079 23592866 ~ 23593133 (+)
G487122 NA non-coding upstream 4948 23591011 ~ 23591264 (+)
G487109 NA non-coding upstream 16979 23579024 ~ 23579233 (+)
G487106 NA non-coding upstream 20502 23575451 ~ 23575710 (+)
G487144 NA non-coding downstream 37521 23643902 ~ 23644111 (+)
G487146 LOC106585492 non-coding downstream 48637 23653120 ~ 23667927 (+)
G487153 NA non-coding downstream 62681 23669062 ~ 23669278 (+)
G487116 NA non-coding downstream 97958 23704339 ~ 23704700 (+)
G487114 NA non-coding downstream 99168 23705549 ~ 23707548 (+)
G487078 LOC106585486 other upstream 64413 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 404295 23079630 ~ 23197514 (+)
G486127 NA other upstream 921760 22674242 ~ 22674452 (+)
G485780 NA other upstream 1151593 22441316 ~ 22444619 (+)
G484726 NA other upstream 2042115 21553732 ~ 21554097 (+)
LOC110525563 LOC106585507 other downstream 305440 23911741 ~ 23914297 (+)
G488049 NA other downstream 973580 24579961 ~ 24586313 (+)
G488078 NA other downstream 1024588 24630969 ~ 24631396 (+)
G488258 NA other downstream 1332388 24938769 ~ 24939272 (+)

Expression


Co-expression Network