LOC110525547 (LOC106585491)


Basic Information

Item Value
gene id LOC110525547
gene name LOC106585491
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23608673 ~ 23609827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605744.2
CCTCCCATTTTAGCACTTGTTCTCCTTGACCTCCCTTCATCTAATATAAGAGGTGGTAGGGTTGGTGTATACCCTCAATGCTTCCTCTGTCATGCATCCAAAATCCCTCCTGTTGCTGCTGACCGCATATGCAGCCCATGGTTCACTGCAGCCCCAGGCTCTGTGGCAATTTGGCAGAATGATCACGTGCACCCAGCCTGATGTCAACCCCTTCATGTACAATAACTATGGCTGTTGGTGTGGCTTGGGGGGGACTGGGACCCCCAGGGATGACCTGGATAGGTGTTGTGAGGTCCACGACCTCTGCTACCGAGCGAGCAGGCATCTTCCAGAGTGCCGTCCCATCATTGACGTCCCTTACATCAAGGTGTACATATTCTCTTGCACAAATGGGCAGGTCTCCTGTTCAGCTTCCAACGATGTGTGCCAGGCCTCAGTGTGCGAATGTGACCGAGTCGCCGCCAACTGCTTCGCCCAGTCCACCTACAACCCTGAGAACAATAACCTGGACCCCAAAACCCACTGTATCACCTGAGCCAAGACAAATCCTCTGGAAGCAGTACAAACATCTGAAACTACTGTAGATTCACTGAATGTTTATGAATCCTGTTTCATGGATGTGTGTCATGTTTGCTGGAATGGAATTTACTGTGCCAATTAAACTGTTGACCTATTAAATGA

Function

NR:

description
phospholipase A2, minor isoenzyme-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605744.2 True 681 mRNA 0.50 4 23608673 23609827

Neighbor

gene id symbol gene type direction distance location
asgrl1 LOC106585488 coding upstream 2292 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 38021 23560898 ~ 23570652 (+)
LOC110525161 bicdl1 coding upstream 215865 23359077 ~ 23392808 (+)
LOC118964855 LOC106585477 coding upstream 288552 23312041 ~ 23320121 (+)
LOC110525581 LOC106585477 coding upstream 300382 23305581 ~ 23313220 (+)
LOC110525549 hnf1a coding downstream 67647 23677474 ~ 23703291 (+)
ggt5a LOC106585500 coding downstream 181617 23791444 ~ 23801151 (+)
LOC110525559 LOC106585501 coding downstream 231648 23841475 ~ 23847341 (+)
LOC110525560 LOC106585504 coding downstream 248027 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 301914 23911741 ~ 23914297 (+)
G487125 NA non-coding upstream 15023 23593389 ~ 23593650 (+)
G487124 NA non-coding upstream 15540 23592866 ~ 23593133 (+)
G487122 NA non-coding upstream 17409 23591011 ~ 23591264 (+)
G487109 NA non-coding upstream 29440 23579024 ~ 23579233 (+)
G487106 NA non-coding upstream 32963 23575451 ~ 23575710 (+)
G487144 NA non-coding downstream 34075 23643902 ~ 23644111 (+)
G487146 LOC106585492 non-coding downstream 45191 23653120 ~ 23667927 (+)
G487153 NA non-coding downstream 59235 23669062 ~ 23669278 (+)
G487116 NA non-coding downstream 94512 23704339 ~ 23704700 (+)
G487114 NA non-coding downstream 95722 23705549 ~ 23707548 (+)
G487078 LOC106585486 other upstream 76874 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 416756 23079630 ~ 23197514 (+)
G486127 NA other upstream 934221 22674242 ~ 22674452 (+)
G485780 NA other upstream 1164054 22441316 ~ 22444619 (+)
G484726 NA other upstream 2054576 21553732 ~ 21554097 (+)
G488049 NA other downstream 970134 24579961 ~ 24586313 (+)
G488078 NA other downstream 1021142 24630969 ~ 24631396 (+)
G488258 NA other downstream 1328942 24938769 ~ 24939272 (+)

Expression


Co-expression Network