LOC110525552 (LOC106585495)


Basic Information

Item Value
gene id LOC110525552
gene name LOC106585495
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23713875 ~ 23717830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052044.1
CAATCGACTATTCTCAGCATATGTTCTCCGTAGAGACGCTTCGCCATCTTGAATTTAGTAAAAGTTGCAGACAGCCATCGACACAGTCGCCttaacaaacacaaaacaaccaAGATATGAGCGGCTCTAACTCTCGAAACAAGACTGCAGCCACAGTCAAAGGACCGGACACCGATATCGGCCCAACTGCAAATTCCAGGGAGCGAAAGTCCGGTGGAGGTGTACTGAAGAGACTCAAATCGCGACGAAATCAAACCGATAAACAGCGGCCTGTTATTACAGAAGAAGAGCTAAGGGCGCTAGGAAGACACATCACACCGGACGAAGTCCTTGGTCTGCGTGCTGTTACACGGGATTATCTATGTAAACCTGAGGACAATGTCTACAATATTGACTTCACACGTTTCAAGATTAGAGATCTGGAGACTGGGACAGTGCTCTTTGAGATTGCTAAACCTCACAACTGTGACCCTGAAGATGAGGAAGAAGAGAATGGAGACGTAGACACCAGTGCTGGACGCTTTGTGCGGTATCAGTTTACGCCGGCCTTCCTCAGACTGCGGACTGTTGGTGCAACTGTGGAGTTCACCGTGGGGGACCGGCCTGTTAACAGCTTTCGCATGATAGAGAGGCATTATTTCCAGGATAAAGTTCTCAAGAACTTTGACTTTGACTTCGGATTCTGCATCCCAAACAGCTGCAACACTTGTGAACATATCTATGAGTTTCCCCAGCTCCCTGAGGACCTCATTTGCCTAATGGTGGAGCACCCGTATGAGACCAGGTCAGACAGCTTCTACTTTGTGGACAACAAACTGATCATGCACAATAAGGCAGACTACGCCTACGATGGGGGCGAGTAGTGCCTGAATATTAGCGTCTTGTGTGCAATGCAACGCAGCGGTCACATTGCCCCAGAACACAACCACAATATAGCCCTTTTGGGAACAGGAGTATACTTCCTCCACTTCAGACATTCCAACAAACTTTACCAGCCCCAGGTTTGGGAAAACAGGACCATGTCTGCCTTCAAAACAAGTTGATCATTTATTTGTTACCCCGTACCCCTCTGTTGCTGGGACTCATAGGAAACTGTTGTCAATCACTCTTTTGTAATGTTGAACATGTTTTTCTTTTAATCTTTTCGAACATTTAAATGGTTACTTTTAATTCGTATAATTTTAATCTGCCTTGAGTTAGTTAGTTCAATATCCTTGTTTTTGTTGGAATACATTTAGGCATATCTTGTGGGTTTGTGTAACTAATCAGCCTAATGATCTAATACACTCATTCAAATGTAATAATATTAGTTTcaatttttcaaaTTTTTGATACCACCTAATTTGATTGAAcaagtaaatacatttttgctaCTCATTGTGCTCTAGTAACAATCATTATCCTTTGCTGTGTCTTTCCTCCTCAGATAGTGGGCTAAATATTCAGCTGTGAGACTAACAAATGCTCCATGACTTAGAAATCTTGCCTTGATAGAAGCTGTATTATTCATATTGGGTGTCCCATTTCACCTCTAGCTGTATATACAACCAATAATCCCTGTTGGCTATGAGACATTTTTGTATTAACTGCCATTGGTAGTAAGTCACAGATGGCACCCCTGGCCTTTTTAAGTTGTTAGCATTTGTGACAGTGCTGTAAATTTACTTGCAGTGTGTTTGTGCCTGCTGGAGTGATACAGAGCCTCCCAACACTAAATTAAACCTCTCCATGGGCCTTTGTATTCAGACTGTTAAACTCAAGgctttgtgtgtgagagaaatcCCTGTCAAGTCCAGCTGTCGATCAGCTGTGCTCCGCTACACATCTCCTCCAACACTCATCAACAGTAAAAAGAAGGCTGGAAAAGATTTTGTGGGTAAAATATTTTTCAGCTATGAAATGATAACTACAGGTCAATGCTCAGTGGAAGGTATGTGATGATAATCACTTTCTAGACTTGTGatatgtgtattttttttattattattattaataattacAGTTGCTGATGGAAAATTGTGAT
>XM_021605763.2
CAATCGACTATTCTCAGCATATGTTCTCCGTAGAGACGCTTCGCCATCTTGAATTTAGTAAAAGTTGCAGACAGCCATCGACACAGTCGCCttaacaaacacaaaacaaccaAGATATGAGCGGCTCTAACTCTCGAAACAAGACTGCAGCCACAGTCAAAGGACCGGACACCGATATCGGCCCAACTGCAAATTCCAGGGAGCGAAAGTCCGGTGGAGGTGTACTGAAGAGACTCAAATCGCGACGAAATCAAACCGATAAACAGCGGCCTGTTATTACAGAAGAAGAGCTAAGGGCGCTAGGAAGACACATCACACCGGACGAAGTCCTTGGTCTGCGTGCTGTTACACGGGATTATCTATGTAAACCTGAGGACAATGTCTACAATATTGACTTCACACGTTTCAAGATTAGAGATCTGGAGACTGGGACAGTGCTCTTTGAGATTGCTAAACCTCACAACTGTGACCCTGAAGATGAGGAAGAAGAGAATGGAGACGTAGACACCAGTGCTGGACGCTTTGTGCGGTATCAGTTTACGCCGGCCTTCCTCAGACTGCGGACTGTTGGTGCAACTGTGGAGTTCACCGTGGGGGACCGGCCTGTTAACAGCTTTCGCATGATAGAGAGGCATTATTTCCAGGATAAAGTTCTCAAGAACTTTGACTTTGACTTCGGATTCTGCATCCCAAACAGCTGCAACACTTGTGAACATATCTATGAGTTTCCCCAGCTCCCTGAGGACCTCATTTGCCTAATGGTGGAGCACCCGTATGAGACCAGGTCAGACAGCTTCTACTTTGTGGACAACAAACTGATCATGCACAATAAGGCAGACTACGCCTACGATGGGGGCGAGTAGTGCCTGAATATTAGCGTCTTGTGTGCAATGCAACGCAGCGGTCACATTGCCCCAGAACACAACCACAATATAGCCCTTTTGGGAACAGGAGTATACTTCCTCCACTTCAGACATTCCAACAAACTTTACCAGCCCCAGGTTTGGGAAAACAGGACCATGTCTGCCTTCAAAACAAGTTGATCATTTATTTGTTACCCCGTACCCCTCTGTTGCTGGGACTCATAGGAAACTGTTGTCAATCACTCTTTTGTAATGTTGAACATGTTTTTCTTTTAATCTTTTCGAACATTTAAATGGTTACTTTTAATTCGTATAATTTTAATCTGCCTTGAGTTAGTTAGTTCAATATCCTTGTTTTTGTTGGAATACATTTAGGCATATCTTGTGGGTTTGTGTAACTAATCAGCCTAATGATCTAATACACTCATTCAAATGTAATAATATTAGTTTcaatttttcaaattgtcatttTTTTCAGGGTTGCCATTTCCCTGGTGAAAGGCCACTCTGTTACCAAACGGCTctacagagggaatctggaactTTACATGATCCCAAAGTGAATGTTGATTACTGGATATTTTAGCCCATAAGATGAACACTGGTTGAAGTTGAGCATGTTGTTATTTTGTCTATACAACAATAGTTGACAGATGGCAAGCCAATTACAACTTTTTGATACCACCTAATTTGATTGAAcaagtaaatacatttttgctaCTCATTGTGCTCTAGTAACAATCATTATCCTTTGCTGTGTCTTTCCTCCTCAGATAGTGGGCTAAATATTCAGCTGTGAGACTAACAAATGCTCCATGACTTAGAAATCTTGCCTTGATAGAAGCTGTATTATTCATATTGGGTGTCCCATTTCACCTCTAGCTGTATATACAACCAATAATCCCTGTTGGCTATGAGACATTTTTGTATTAACTGCCATTGGTAGTAAGTCACAGATGGCACCCCTGGCCTTTTTAAGTTGTTAGCATTTGTGACAGTGCTGTAAATTTACTTGCAGTGTGTTTGTGCCTGCTGGAGTGATACAGAGCCTCCCAACACTAAATTAAACCTCTCCATGGGCCTTTGTATTCAGACTGTTAAACTCAAGgctttgtgtgtgagagaaatcCCTGTCAAGTCCAGCTGTCGATCAGCTGTGCTCCGCTACACATCTCCTCCAACACTCATCAACAGTAAAAAGAAGGCTGGAAAAGATTTTGTGGGTAAAATATTTTTCAGCTATGAAATGATAACTACAGGTCAATGCTCAGTGGAAGGTATGTGATGATAATCACTTTCTAGACTTGTGatatgtgtattttttttattattattattaataattacAGTTGCTGATGGAAAATTG
>TU554111
CTTGAATTTAGTAAAAGTTGCAGACAGCCATCGACACAGTCGCCttaacaaacacaaaacaaccaAGATATGAGCGGCTCTAACTCTCGAAACAAGACTGCAGCCACAGTCAAAGGACCGGACACCGATATCGGCCCAACTGCAAATTCCAGGGAGCGAAAGTCCGGTGGAGGTGTACTGAAGAGACTCAAATCGCGACGAAATCAAACCGATAAACAGCGGCCTGTTATTACAGAAGAAGAGCTAAGGGCGCTAGGAAGACACATCACACCGGACGAAGTCCTTGGTCTGCGTGCTGTTACACGGGATTATCTATGTAAACCTGAGGACAATGTCTACAATATTGACTTCACACGTTTCAAGATTAGAGATCTGGAGACTGGGACAGTGCTCTTTGAGATTGCTAAACCTCACAACTGTGGTAAACTCAAATGTCTTGCCCAGCATGAAGTTTCAACTTTTCCACCACACTTTGGCACAGCATAAATAGCTTGGATAGGCCACATCTTAAAGGTAAACTCAGCAATATGACATCATTATACACATTGGAGTGTATTCCTACTTATAGAAATCAAGTCCAGGTCACTGTCAACTTGAACAGGGCACCAGGCTCAAGCTGTAAAACAGCCTAGTTGGAAAAACCACTGCTGACGGTGCACTCGTGTTATTAGGTTGGGGTACAAAACTAATGCTCAAATCTGCCACTATATTTTCTCTTTCCAATGAGGACTTGCCCCATTAGAAGGTATAAATGAGAATGCCCATAGTCTTGGCAGATTTTAGCATTCGTTTAGTAAGCAGGAAGTTGCCCCGCTGTGTATGATGTAGTATCGCTAAGTCTACTTAGAAGGGCCCAGACCAAATGAATCAGTCTATTATTTCAAGTAAGGCATAACACAAGCCAAGTTATTCCCCCTATGATAATTGATGTAGTCCTTACACAAATGTTGTAGATACAATTTTAGGTTGAAATCAGAGATGACATGTTGACACTTATTTGGATGTCAATTCCATTTTAATTCATGTTCTCTATCAGACCCTGAAGATGAGGAAGAAGAGAATGGAGACGTAGACACCAGTGCTGGACGCTTTGTGCGGTATCAGTTTACGCCGGCCTTCCTCAGACTGCGGACTGTTGGTGCAACGTAAATCAGTGGATTAAACAGGAAACACCACATTCATTATTAGAAGTCATATAACTCGTAGTTGAAAAACCACATACTGTGATTATACTTAAATGTTTCATAATATATGTGCTTTCTGCTTTTCAATATGGCAGGCTTACCTCAAGCTCTAGTATGCTGTTAGCACCCTCAAATACAGTACAGGTCCATTGCTTATAACTCAGCAGTTACTTATGCAGACGAATCATGATCTCAGTTTCATGCTCAATTTCGTTTGCTGGTGTGGCTTTGCAGCTCTGGCAACCAATCCAACTGTGGTTACAGAGACGATTTGTCAGAGCCCTGACAACACACTTAATGCTTTTCTCCTAAAGTTGTTTTACATGGCTGGCAACAATACAATTGAAATAATCATCCTTCTTTTTGACTTTTAGAAATATAGATGGTTAATGAATAAAGCTTCAATTCTAGTGGCTTAAGCCATTTCATGCAGCTATGTTCAGCATGTCCCTACCAGTATCTCAAgtgcctctctttcttccccgCTTTCAGTGTGGAGTTCACCGTGGGGGACCGGCCTGTTAACAGCTTTCGCATGATAGAGAGGCATTATTTCCAGGATAAAGTTCTCAAGAACTTTGACTTTGACTTCGGATTCTGCATCCCAAACAGCTGCAACACTTGTGAACATATCTATGAGTTTCCCCAGCTCCCTGAGGACCTCATTTGCCTAATGGTGGAGCACCCGTATGAGACCAGGTCAGACAGCTTCTACTTTGTGGACAACAAACTGATCATGCACAATAAGGCAGACTACGCCTACGATGGGGGCGAGTAGTGCCTGAATATTAGCGTCTTGTGTGCAATGCAACGCAGCGGTCACATTGCCCCAGAACACAACCACAATATAGCCCTTTTGGGAACAGGAGTATACTTCCTCCACTTCAGACATTCCAACAAACTTTACCAGCCCCAGGTTTGGGAAAACAGGACCATGTCTGCCTTCAAAACAAGTTGATCATTTATTTGTTACCCCGTACCCCTCTGTTGCTGGGACTCATAGGAAACTGTTGTCAATCACTCTTTTGTAATGTTGAACATGTTTTTCTTTTAATCTTTTCGAACATTTAAATGGTTACTTTTAATTCGTATAATTTTAATCTGCCTTGAGTTAGTTAGTTCAATATCCTTGTTTTTGTTGGAATACATTTAGGCATATCTTGTGGGTTTGTGTAACTAATCAGCCTAATGATCTAATACACTCATTCAAATGTAATAATATTAGTTTcaatttttcaaattgtcatttTTTTCAGGGTTGCCATTTCCCTGGTGAAAGGCCACTCTGTTACCAAACGGCTctacagagggaatctggaactTTACATGATCCCAAAGTGAATGTTGATTACTGGATATTTTAGCCCATAAGATGAACACTGGTTGAAGTTGAGCATGTTGTTATTTTGTCTATACAACAATAGTTGACAGATGGCAAGCCAATTACAACTTTTTGATACCACCTAATTTGATTGAAcaagtaaatacatttttgctaCTCATTGTGCTCTAGTAACAATCATTATCCTTTGCTGTGTCTTTCCTCCTCAGATAGTGGGCTAAATATTCAGCTGTGAGACTAACAAATGCTCCATGACTTAGAAATCTTGCCTTGATAGAAGCTGTATTATTCATATTGGGTGTCCCATTTCACCTCTAGCTGTATATACAACCAATAATCCCTGTTGGCTATGAGACATTTTTGTATTAACTGCCATTGGTAGTAAGTCACAGATGGCACCCCTGGCCTTTTTAAGTTGTTAGCATTTGTGACAGTGCTGTAAATTTACTTGCAGTGTGTTTGTGCCTGCTGGAGTGATACAGAGCCTCCCAACACTAAATTAAACCTCTCCATGGGCCTTTGTATTCAGACTGTTAAACTCAAGgctttgtgtgtgagagaaatcCCTGTCAAGTCCAGCTGTCGATCAGCTGTGCTCCGCTACACATCTCCTCCAACACTCATCAACAGTAAAAAGAAGGCTGGAAAAGATTTTGTGGGTAAAATATTTTTCAGCTATGAAATGATAACTACAGGTCAATGCTCAGTGGAAGGTATGTGATGATAATCACTTTCTAGACTTGTGatatgtgtattttttttattattattattaataattacAGTTGCTGATGGAAAATTGTGATGGCATCCACCATTATAAATTCTGTATTTCTAATAGCGCCCTCAAATTGTTAAGATGTCGCCGAAGAGAATagctga

Function

NR:

description
protein unc-119 homolog B-like isoform X2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060271 cilium assembly biological_process
GO:0007399 nervous system development biological_process
GO:0005929 cilium cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052044.1 False 2023 mRNA 0.42 6 23713951 23717830
XM_021605763.2 False 2229 mRNA 0.42 5 23713955 23717830
TU554111 True 3408 TUCP 0.41 3 23713875 23717783

Neighbor

gene id symbol gene type direction distance location
LOC110525551 LOC106585494 coding downstream 3723 23706557 ~ 23710228 (-)
LOC110525548 LOC106585492 coding downstream 45583 23644995 ~ 23668368 (-)
LOC118965070 LOC106585337 coding downstream 70603 23622807 ~ 23643348 (-)
aakb1 aakb1 coding downstream 96265 23614867 ~ 23617686 (-)
pla2g1b LOC106585490 coding downstream 106125 23606349 ~ 23607826 (-)
LOC110525553 LOC106585496 coding upstream 550 23718380 ~ 23728979 (-)
LOC110525554 LOC106585497 coding upstream 12170 23730000 ~ 23750838 (-)
LOC110525555 LOC106585499 coding upstream 39974 23757804 ~ 23779720 (-)
LOC110525558 LOC106585502 coding upstream 96972 23814802 ~ 23832541 (-)
LOC110525220 anapc5 coding upstream 132180 23850010 ~ 23855515 (-)
G487546 NA non-coding downstream 9692 23703534 ~ 23704259 (-)
G487538 hnf1a non-coding downstream 14436 23697218 ~ 23699515 (-)
G487529 NA non-coding downstream 39805 23673929 ~ 23674146 (-)
G487504 NA non-coding downstream 118968 23594705 ~ 23594983 (-)
G487553 NA non-coding upstream 11478 23729308 ~ 23729536 (-)
G487620 NA non-coding upstream 121932 23839762 ~ 23839997 (-)
G487628 NA non-coding upstream 140032 23857862 ~ 23863007 (-)
G487650 NA non-coding upstream 196536 23914366 ~ 23915707 (-)
LOC110525180 hps4 other downstream 128397 23582127 ~ 23587892 (-)
G487016 NA other downstream 321889 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 328044 23385534 ~ 23385907 (-)
G486953 NA other downstream 460590 23251286 ~ 23258106 (-)
G486716 NA other downstream 873385 22837653 ~ 22840566 (-)
G488386 NA other upstream 635703 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 943067 24655788 ~ 24715090 (-)
G489038 NA other upstream 1388375 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1779133 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2561877 26271759 ~ 26283169 (-)

Expression


Co-expression Network