LOC110525554 (LOC106585497)


Basic Information

Item Value
gene id LOC110525554
gene name LOC106585497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23730000 ~ 23750838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052045.1
ACGCACGGTAAATTCAGGGTTCCAGGGACGTTCACATTAGTGACAGGATGACGCGACGTGAACATCGTGCTCTCCCTCATCACTATGATTTTGGTTACGCGTCTGCGCGCGCCCTGCATCAGCGGCCGGGCCACATAGCAATCAGGTGGTAAAATGCAACTTTTAAGGATAGCTTTTGAAGGCAGCTATGGTGTTGTTGTTACCTTACAAGGGCCGACAATATGAGAAAATGACATATTTGATGGGTAACTAAACGGCAATGAGTAGGTTAACCGGATGAAACGAGACTAGAAGCAAGACAATCATGAGCTCCTCTTTTCCCAAATCCGAATCCAAGACCTCATTGCTGAAATCTTCCTCGGCAAGCGGAAGATCGACACACTTCCCTGAACGTACGACAGGAACCGACcgaaatcatcatcatcatcaccaccgtCCAGCTGCAAGTCAAGTGAGCAGCAATGCCGCAGAGGAGTCTTTCTGGTCGGCAGAGTGCGACGTTACTGCGAGGAGACCCCTGTGCCACCCTTCGCTCCTCGGTACCCGGAATAGGGCGACGACCCGAGCTAGTAAGAGCCAGCCCCACGCCCCACATGGCAACGTTCCCGCCGCCCACTCCCAGGATGACCCATCTGAGCAACATGGTGTGGTTCGAGGTGTGAGAGAACGCTGCAAGTCATCCAAGCATCACCGACACCACCGGAAAACGACCCGGGACGACCAGCCAGCTGCACAACACCACAGCCACACTCACCCTACCCGTTTAGACCCCAGAATAGGCATGCAGCCCCACTCAGACTGCAAAGACGACACCGCGCTCTTGTTTGAATCGAGGGACCATACAAGGGCCAGTTCGTCTGCTAGCGTGGATGTCAGCATCCCGTCCCCAGCTTCCTCCTCGCCTATCCCCGTATCCAGCCGATCCTCTCACCGCTCTCGAAGGTCCAGCGCAGCATCTTGTGAATCTGACTTTTTGCGGCCAATTCTCAACTCGGTTTTTGGACAGGACAGAGACCTGAGGCCAGAGGAGATTGATGAGTTGCGGGATGCTTTTAAGGAGTTTGATAAGGACAAAGATGGTTTCATCAGCTGTAAAGACCTGGGAAACTGTATGAGAACCATGGGATACATGCCTACTGAAATGGAGTTGATAGAACTGAGCCAACAGATCAACATGAATTTGGGAGGTCATGTTGACTTTGAGGATTTTGTGGAGTTGATGGGCCCCAAACTTCTCGCTGAAACTGCAGATATGATTGGTGTAAAAGAACTGAGAGATGCCTTCAAAGAGTTTGACACCAATGGTGATGGAGCGATAAGCACATCTGAGCTGAGAGAAGCCATGAGGAAGTTGCTGGGACAACAGGTGAGGTTACAGAATGAAGTCTGTCTGAGTAGCTTAACCGATGTATGCATCACTACTAAAAACGTTGTTTTACACACACGTATTCCTCCTTTGTTACTGGACTGTAGGTTGGCCACAAGGACTTAGAAGATATCCTGAGGGACATCGACTTGAATGGTGATGGGCATGTTGACTTTGAAGAGTTTGTACGAATGATGTCCCGCTGAGAGGAGGAATGGTCGATATGGCTTCAAGTTAATTATTCTGAATGTGAACCTCGGCCCCTTTGTCATCATCATTGAATGAGCAAAACGGAATAAATACTTGGACCTCTGAGCTATCTTTTCCTGAgaaaaactggaattaaagccctTACCTCTAAGTAGAAACGGAAGACCACGGTACTGCTCAAAATAGTGTTCTTCCCTAAAAGCCCCACATTCCAACTTAGACAGGTTCTACTGTAGCTTACAGACTGACCCGCTAATGGTTTCCACACTATTAACCCTCCACGAACTGTATACACTTGTGTGTAGCCTGCTGTTTAGGCAAGTTTTGTTTCTCAACCTTTAAATGGCAATATTTCTTGTGACTACTGATATGTTCTTCAAGTTTGGGTAATAGAGTGAGAAAAGCAGAGAgtcttatttgtgtgtgtgtttgtcactgtGATCTTTTGTGAGgtgatcactgtgtttacccagCACCATAAATGCACCAGATCCTCTCTAATGCACTGGGTTTATGGGACAAGCAAGAGCTAAGAGGACCTCAGCAAACACGCTTTTCCCAGATCTGGAAAATAGTAGCTTTTCTTCACATTTGTGTGCAGTGCATAAACATGATGGTTTATGTGTACagtatcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtacagtttGACAAATAAATTGCAGAGTCCTAGTTTGTCATTGTGCTGTTTTTATGCATGCCAGAGACAAACCTAATTTTAAATATAGTATTATCTGTATGGGTGTGACAGTAAATGTAATACATTGTCTAATGTATAAAGTAGGCCACGCAATCTACTAAAAATAAATGTCTACTTGTGAACCTGTTTTTCCAGTGTTGCAATAAGTCCCAGGGAAATAGCTATATGGTGTGAAGCCAGGAAAGAAGAGACAGATTGAACTATTGCAATACCAGACAAACATGTAAAGGGCCCATACTAGGGGCTTCTGTGAAGTGAAGAAGTGTCTCACAAGGACATTGGACTGACACATCAAACCTTCTTTTTCATTTTTTGCATATGGATAAACAATACAGAGCAATAGGCCTAGACCATTCTGGGCTCAAACAATATCAACATTTAAGAAAATATTCAAATAGATATGGCTAAAGGCCGACCTTGACAGAACAGAAATGATTTGTAGACTTCAGTTACTAAAGAGACGTTTTCATGGTACCAGGACACAACAATGGTGCGcgaatgactggctggctggaacAGAACAAGTTGTCATGGCAACTGTCTCGCTCTTCCACCTGGATCCGCAGGAGCGGCGCAACATCTCTCTTCTTTGTTCCCTACCGTCTGTCTGGACATGACCCAAAATCCACACGGGCTCCATCGTGTGGTAAATGTCTAGAATACATTTTGTTTTGAGTTCTTGATGTTCTCAATTTTCGAAACTCAAGAGATGCACGAGATAAAACTGTCTAATCGTTAGCATACAGCTAGCTACAcagcactttaaaaaaaaaagtcaggTGCAGGTTTCTTTCATCATAGTGTTCGCTGTATGCATATTGTGTGTGAATTGTGTTGTGTGTATTGCTGAATTGTCATCTGTTGATATGATTATGTGGGCTACAGGTTGTGTTTTTCTAGTGACAACATATCGGCATGGTCTGTGGTTGATCAAAACCCATGGCACAGTTTCTAAACCAGTGGTCACCAATTGTTCGATCGCGGCAGACCAGGGAGATTTGTGGCTAAATCGAGTGCGCCTACTCTGCTGGCCAATCGGATAGCTCACATCACCGTGCCTACAAGCTTCCAAGACAGGAAGACCCCGGCGACAGAAAGTTTGATACTAGCCAGCGTGAGAATTCATAACTTTTACAACCATGTTCAGATAAATACTTTTAAAGAATA
>XM_021605766.2
TAAATTCAGGGTTCCAGGGACGTTCACATTAGTGACAGGATGACGCGACGTGAACATCGTGCTCTCCCTCATCACTATGATTTTGGTTACGCGTCTGCGCGCGCCCTGCATCAGCGGCCGGGCCACATAGCAATCAGGTGGTAAAATGCAACTTTTAAGGATAGCTTTTGAAGGCAGCTATGGTGTTGTTGTTACCTTACAAGGGCCGACAATATGAGAAAATGACATATTTGATGGGTAACTAAACGGCAATGAGTAGGTTAACCGGATGAAACGAGACTAGAAGCAAGACAATCATGAGCTCCTCTTTTCCCAAATCCGAATCCAAGACCTCATTGCTGAAATCTTCCTCGGCAAGCGGAAGATCGACACACTTCCCTGAACGTACGACAGGAACCGACcgaaatcatcatcatcatcaccaccgtCCAGCTGCAAGTCAAGTGAGCAGCAATGCCGCAGAGGAGTCTTTCTGGTCGGCAGAGTGCGACGTTACTGCGAGGAGACCCCTGTGCCACCCTTCGCTCCTCGGTACCCGGAATAGGGCGACGACCCGAGCTAGTAAGAGCCAGCCCCACGCCCCACATGGCAACGTTCCCGCCGCCCACTCCCAGGATGACCCATCTGAGCAACATGGTGTGGTTCGAGGTGTGAGAGAACGCTGCAAGTCATCCAAGCATCACCGACACCACCGGAAAACGACCCGGGACGACCAGCCAGCTGCACAACACCACAGCCACACTCACCCTACCCGTTTAGACCCCAGAATAGGCATGCAGCCCCACTCAGACTGCAAAGACGACACCGCGCTCTTGTTTGAATCGAGGGACCATACAAGGGCCAGTTCGTCTGCTAGCGTGGATGTCAGCATCCCGTCCCCAGCTTCCTCCTCGCCTATCCCCGTATCCAGCCGATCCTCTCACCGCTCTCGAAGGTCCAGCGCAGCATCTTGTGAATCTGACTTTTTGCGGCCAATTCTCAACTCGGTTTTTGGACAGGACAGAGACCTGAGGCCAGAGGAGATTGATGAGTTGCGGGATGCTTTTAAGGAGTTTGATAAGGACAAAGATGGTTTCATCAGCTGTAAAGACCTGGGAAACTGTATGAGAACCATGGGATACATGCCTACTGAAATGGAGTTGATAGAACTGAGCCAACAGATCAACATGAATTTGGGAGGTCATGTTGACTTTGAGGATTTTGTGGAGTTGATGGGCCCCAAACTTCTCGCTGAAACTGCAGATATGATTGGTGTAAAAGAACTGAGAGATGCCTTCAAAGAGTTTGACACCAATGGTGATGGAGCGATAAGCACATCTGAGCTGAGAGAAGCCATGAGGAAGTTGCTGGGACAACAGGTTGGCCACAAGGACTTAGAAGATATCCTGAGGGACATCGACTTGAATGGTGATGGGCATGTTGACTTTGAAGAGTTTGTACGAATGATGTCCCGCTGAGAGGAGGAATGGTCGATATGGCTTCAAGTTAATTATTCTGAATGTGAACCTCGGCCCCTTTGTCATCATCATTGAATGAGCAAAACGGAATAAATACTTGGACCTCTGAGCTATCTTTTCCTGAgaaaaactggaattaaagccctTACCTCTAAGTAGAAACGGAAGACCACGGTACTGCTCAAAATAGTGTTCTTCCCTAAAAGCCCCACATTCCAACTTAGACAGGTTCTACTGTAGCTTACAGACTGACCCGCTAATGGTTTCCACACTATTAACCCTCCACGAACTGTATACACTTGTGTGTAGCCTGCTGTTTAGGCAAGTTTTGTTTCTCAACCTTTAAATGGCAATATTTCTTGTGACTACTGATATGTTCTTCAAGTTTGGGTAATAGAGTGAGAAAAGCAGAGAgtcttatttgtgtgtgtgtttgtcactgtGATCTTTTGTGAGgtgatcactgtgtttacccagCACCATAAATGCACCAGATCCTCTCTAATGCACTGGGTTTATGGGACAAGCAAGAGCTAAGAGGACCTCAGCAAACACGCTTTTCCCAGATCTGGAAAATAGTAGCTTTTCTTCACATTTGTGTGCAGTGCATAAACATGATGGTTTATGTGTACagtatcctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtacagtttGACAAATAAATTGCAGAGTCCTAGTTTGTCATTGTGCTGTTTTTATGCATGCCAGAGACAAACCTAATTTTAAATATAGTATTATCTGTATGGGTGTGACAGTAAATGTAATACATTGTCTAATGTATAAAGTAGGCCACGCAATCTACTAAAAATAAATGTCTACTTGTGAACCTGTTTTTCCAGTGTTGCAATAAGTCCCAGGGAAATAGCTATATGGTGTGAAGCCAGGAAAGAAGAGACAGATTGAACTATTGCAATACCAGACAAACATGTAAAGGGCCCATACTAGGGGCTTCTGTGAAGTGAAGAAGTGTCTCACAAGGACATTGGACTGACACATCAAACCTTCTTTTTCATTTTTTGCATATGGATAAACAATACAGAGCAATAGGCCTAGACCATTCTGGGCTCAAACAATATCAACATTTAAGAAAATATTCAAATAGATATGGCTAAAGGCCGACCTTGACAGAACAGAAATGATTTGTAGACTTCAGTTACTAAAGAGACGTTTTCATGGTACCAGGACACAACAATGGTGCGcgaatgactggctggctggaacAGAACAAGTTGTCATGGCAACTGTCTCGCTCTTCCACCTGGATCCGCAGGAGCGGCGCAACATCTCTCTTCTTTGTTCCCTACCGTCTGTCTGGACATGACCCAAAATCCACACGGGCTCCATCGTGTGGTAAATGTCTAGAATACATTTTGTTTTGAGTTCTTGATGTTCTCAATTTTCGAAACTCAAGAGATGCACGAGATAAAACTGTCTAATCGTTAGCATACAGCTAGCTACAcagcactttaaaaaaaaaagtcaggTGCAGGTTTCTTTCATCATAGTGTTCGCTGTATGCATATTGTGTGTGAATTGTGTTGTGTGTATTGCTGAATTGTCATCTGTTGATATGATTATGTGGGCTACAGGTTGTGTTTTTCTAGTGACAACATATCGGCATGGTCTGTGGTTGATCAAAACCCATGGCACAGTTTCTAAACCAGTGGTCACCAATTGTTCGATCGCGGCAGACCAGGGAGATTTGTGGCTAAATCGAGTGCGCCTACTCTGCTGGCCAATCGGATAGCTCACATCACCGTGCCTACAAGCTTCCAAGACAGGAAGACCCCGGCGACAGAAAGTTTGATACTAGCCAGCGTGAGAATTCATAACTTTTACAACCATGTTCAGATAAATACTTTTAAAGAAT
>XM_036979680.1
CACGCACGGTAAATTCAGGGTTCCAGGGACGTTCACATTAGTGACAGGATGACGCGACGTGAACATCGTGCTCTCCCTCATCACTATGATTTTGGTTACGCGTCTGCGCGCGCCCTGCATCAGCGGCCGGGCCACATAGCAATCAGGTGGTAAAATGCAACTTTTAAGGATAGCTTTTGAAGGCAGCTATGGTGTTGTTGTTACCTTACAAGGGCCGACAATATGAGAAAATGACATATTTGATGGGTAACTAAACGGCAATGAGTAGGTTAACCGGATGAAACGAGACTAGAAGCAAGACAATCATGAGCTCCTCTTTTCCCAAATCCGAATCCAAGACCTCATTGCTGAAATCTTCCTCGGCAAGCGGAAGATCGACACACTTCCCTGAACGTACGACAGGAACCGACcgaaatcatcatcatcatcaccaccgtCCAGCTGCAAGTCAAGTGAGCAGCAATGCCGCAGAGGAGTCTTTCTGGTCGGCAGAGTGCGACGTTACTGCGAGGAGACCCCTGTGCCACCCTTCGCTCCTCGGTACCCGGAATAGGGCGACGACCCGAGCTAGTAAGAGCCAGCCCCACGCCCCACATGGCAACGTTCCCGCCGCCCACTCCCAGGATGACCCATCTGAGCAACATGGTGTGGTTCGAGGTGTGAGAGAACGCTGCAAGTCATCCAAGCATCACCGACACCACCGGAAAACGACCCGGGACGACCAGCCAGCTGCACAACACCACAGCCACACTCACCCTACCCGTTTAGACCCCAGAATAGGCATGCAGCCCCACTCAGACTGCAAAGACGACACCGCGCTCTTGTTTGAATCGAGGGACCATACAAGGGCCAGTTCGTCTGCTAGCGTGGATGTCAGCATCCCGTCCCCAGCTTCCTCCTCGCCTATCCCCGTATCCAGCCGATCCTCTCACCGCTCTCGAAGGTCCAGCGCAGCATCTTGTGAATCTGACTTTTTGCGGCCAATTCTCAACTCGGTTTTTGGACAGGACAGAGACCTGAGGCCAGAGGAGATTGATGAGTTGCGGGATGCTTTTAAGGAGTTTGATAAGGACAAAGATGGTTTCATCAGCTGTAAAGACCTGGGAAACTGTATGAGAACCATGGGATACATGCCTACTGAAATGGAGTTGATAGAACTGAGCCAACAGATCAACATGAATTTGGGAGGTCATGTTGACTTTGAGGATTTTGTGGAGTTGATGGGCCCCAAACTTCTCGCTGAAACTGCAGATATGATTGGTGTAAAAGAACTGAGAGATGCCTTCAAAGAGTTTGACACCAATGGTGATGGAGCGATAAGCACATCTGAGCTGAGAGAAGCCATGAGGAAGTTGCTGGGACAACAGGTTGGCCACAAGGACTTAGAAGATATCCTGAGGGACATCGACTTGAATGGTGATGGGCATGTTGACTTTGAAGGTAAGCTGATGCAGAGTTTATTTATCTATACCAACAGAATAATAAAATCACAGACAATATTGTAATAGCTAGAGATTTTGCTATTCATGCTGTGTGCAAGCTAGTCTTCAGATAATGGGACAGGAGTGCTTCGTAAACACTTGATGTCAACTGGTCTTCCTTACTCTTCAATTTCATGATATTTCTTTCCTTTTATCCACTTTCTGGCAAAGCTTCAAATAGCTTTGACATTTGCAAACGGCCTGTTTCAACCATGTAAGGAAAGTGTGGTCTCCTCCTGTGTTTTCCTTATAACAGCGAGAACACAATCCCTATACCCCAATCCTTAAACTGGTAAATGCATTATGATACAGTATTCAATATGTCTGTCGGCTGCAGACAACTATGGGGCCCACTGGTCACTGTGACTCAAAAATAGACGTGCAGTAACATATGATACTGTCCACTTTCACACAGTCTGCATGTCCTCTGCAtattgtaacacacacacacagactgaactTC

Function

NR:

description
calcium-binding protein 1-like isoform X1

GO: NA

KEGG:

id description
K23531 CABP1_2_4_5; calcium-binding protein 1/2/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052045.1 False 3523 mRNA 0.46 6 23730000 23750837
XM_021605766.2 False 3407 mRNA 0.46 7 23730001 23750829
XM_036979680.1 True 1944 mRNA 0.48 6 23732012 23750838

Neighbor

gene id symbol gene type direction distance location
LOC110525553 LOC106585496 coding downstream 1021 23718380 ~ 23728979 (-)
LOC110525552 LOC106585495 coding downstream 12170 23713875 ~ 23717830 (-)
LOC110525551 LOC106585494 coding downstream 19772 23706557 ~ 23710228 (-)
LOC110525548 LOC106585492 coding downstream 61632 23644995 ~ 23668368 (-)
LOC118965070 LOC106585337 coding downstream 86652 23622807 ~ 23643348 (-)
LOC110525555 LOC106585499 coding upstream 6966 23757804 ~ 23779720 (-)
LOC110525558 LOC106585502 coding upstream 63964 23814802 ~ 23832541 (-)
LOC110525220 anapc5 coding upstream 99172 23850010 ~ 23855515 (-)
LOC110525561 LOC106585505 coding upstream 137816 23888654 ~ 23911739 (-)
LOC110525564 NA coding upstream 164958 23915796 ~ 23918064 (-)
G487553 NA non-coding downstream 464 23729308 ~ 23729536 (-)
G487546 NA non-coding downstream 25741 23703534 ~ 23704259 (-)
G487538 hnf1a non-coding downstream 30485 23697218 ~ 23699515 (-)
G487620 NA non-coding upstream 88924 23839762 ~ 23839997 (-)
G487628 NA non-coding upstream 107024 23857862 ~ 23863007 (-)
G487650 NA non-coding upstream 163528 23914366 ~ 23915707 (-)
G487655 NA non-coding upstream 177054 23927892 ~ 23928124 (-)
G487656 NA non-coding upstream 178413 23929251 ~ 23929771 (-)
LOC110525180 hps4 other downstream 144446 23582127 ~ 23587892 (-)
G487016 NA other downstream 337938 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 344093 23385534 ~ 23385907 (-)
G486953 NA other downstream 476639 23251286 ~ 23258106 (-)
G488386 NA other upstream 602695 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 910059 24655788 ~ 24715090 (-)
G489038 NA other upstream 1355367 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1746125 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2528869 26271759 ~ 26283169 (-)

Expression


Co-expression Network