LOC110525558 (LOC106585502)


Basic Information

Item Value
gene id LOC110525558
gene name LOC106585502
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23814802 ~ 23832541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605771.2
AACACAGCACAAACCTAAACAACAGCGTAAAGGGACAGGCAGGGAATGACAAGAAGAGCATCCACCGCCTGACCAAGCTGGCACACGTAGACCATCAGAGATCAAAACAAAAACAGAGCATTCGTCTGTCCTCGTAAATGTGTCATGCGCGCAACAGACAGTCATTAAATATCCGGTAAATCAGGAATATTGTTCTGTTGCTCTCTGTATTGGAGGTTGTCGTCTGACAACGACAATACAGACTACAGATAATATATGGGCTATTGAACTGAGTAATATTTATATTTCTAGATATTAATGTAGTGCAATTATGCAATTGTAAAATAGGCTACTGTTGATATAAATACTGAAATATGGGTTCTAGATTAAGCAGACAGAGTAGTCTGGACAATGAGAATTTTACGAAAAGGGGTCGCAAGCATCTTGACAGCACAGGAGAAAGCGACAGAGGTGGAAGTCGAGGCAGCGGCGACTTTCTTTTTACAATGATTCTGAAATCAGACAAACTGCCGGGGATGCTGCGAAGGTCCAACCACAGTCCCTACGTGAGGCGAGTGGCATGGATCCGAGACATACAAAAGCTGCTCCGTGATCGCAGGATAGATCAGGCAACCGACGTGCTCAAACTATTGAGGAAGGATCTGGGCTTGGAAGGCACATCCCTCAATGACATCTTATATAAGAATGCTGCTTTTCTCAACCTGGTGGACCCCATCTCCCATGAGTTGTTGCTCAGCCTGGCTCGTGAGATGCAGTGTCCCAAGAAGAAGGATGCTGACACCATCAAGTCGTCAGATAAGATTTGCAGACAGCTGATCTACCACCTGACCCCTCACTCCAAGTGGCTCAGACAGAGCATGTCCAGACGGAAGTCCCAGGCCTGTCTCAAGACAACCCTGCAGAGAAAAGTATCCACTGACACAGTTGACTTGTCTGGCATACCTCTCTCCAGTCGAGATGTTCGCCACGTGGCCTTCTACCTTCAGAACAGTGGGGATGCAGTGGTGGCTGTGGATATCAGCTTCACTGAGCTCCAAGATGAGAACCTCCGTGTCCTGCTACCGGTCCTGGGGTCTCTGCCCAAACTCAACACCCTGGCCCTCAACGGCAACCGGCTGACCCTGGCCATAGTCAAAGACTTGACTGAGATCCTGAAAGACCCAAAGAAGTTCTCCAACCTGGCTTGGATTGATCTGGGCAACAACTTTGACATTTTCACCATGCCCCAGCCCCTGTTAGTGGCCCTGCGACGCCGCTGCAGCCTGAAGAGCAGCTTGCCCACCATCTATGAGTACACAGAGGGCCAACCCTACTGCTACCACATGGAGACCTCCATTGAGGAACCCAGCCactacgaggaggaggaggaggcaggggaagaggagggggaggaagatgaAGACGAGCTGGAGCCATGGGCTATAGGGGGGAAAAAGATTTCAAAGGACTTCACACTACACTACTGTGAGAGGTGATGAGTTGAAGTCCCCCTGGCTCGGTTCAGCTGTGTTTGAAAGGCCTTCCCACAGCTTCAAGTTCCTACCTTTCCCATGTTGCCCTTTACACCATGAGCCCAGTCACCCATTGTGGCACGAGGGATGTTTAGCGCCACACATTCCAGAGACCATCGTTCCAACACAGCCACCAAATAATCTCTCGCCATCTATGAGTTAACCAACACAAGACCACTGCAGTAACTGATTATGTTGGTGACTTACTGTGTTGGTGGATGGTGCTCCTGGGAACGAGGTGCGGTTTCATTGGAGGTGGGCTAGAAGAATTTAGGAaaaggtgctctctctctctcgccctcttaaAGTAGCAGCTGTGGAGCAAATCCCAAGGACTTCAGATCAGACGGCTTGACGGAGGAGCGGCATAACGCTGGTGGTCTAATGAGCTGCTGTTGGTTTGGAAGCAGTAGGTCCCAACCAGGTTCTCTACCAGGACTGTCACTGAGACTATCCCTGGCAGGCAGGGCCTAGCTCCACATTGTGTGTTCTCTGTTAATCTCTCAACAAAGGCTATGAAACAAGTTCAACAGACTATACAGCCGACGAACCGTCACGTGATTCTGGCAAAACTGCTAAGTCAAGACTTTTTgctccccccccccgcccccctttcgaAATGTCCACTTGTGAATACCTACGTAGATGTAAATGATGACACATAACAGGGCTCTGTTGTGTTTCCACAGGCTATTTTAGTGCACTGCTGGTGAATAAAGCCATCTTAGAAGACAACAGGTAGGACTCAACAATAGACTGATTGTTCGCTGTTGCCAAAACTCTGAGATTCACCACTGTATTTAGCTGTTTTAGTCATTATCATTTTAGAACACATGTGGGATGAATGACAGTGCAGACAAGCCCCAAGGGTGGACTCATTCATCTCTTTGTAGTGAGGAACGTACCAAATGGAATCACATACTGACACCCTTTGTACTAATATGTCGTTATTAACAtttatatgtgtgtttgtttatatgtgtgtttgtttatatgtgtgtttgtttatatgTGCGTTtgtttatatgtgtgtttgtttattgtgGGAGAAACATGACTGTTACATATCAGTTGTAGGCTATTACCAGGACTGATAATCAGCGGGGTGGGCTGAGTGTAGTGCTGGATAGTGGTGgtctatgaaatagcacataatAGGTCAGTTGGGTTTACCAACTGGAGCTGAGCTCCATGCTGTATTGCACTTTAAGAAATGTGAGAAATGGATTTGACTTCAGATCCATTTCATTCTCTCATTGATGCATGAAGCTGTTTTTACCAATTCATCCTAATATCAATATTGATTTTTCACAATGATATTTCAGAAGCTTAACCACACTGACACCATAATATACATAAAGGTCATTCAGCAAACTGCTATTAACAATAATTGAATAACTGGATGTAATATACTGGTATCGTCTGATTGAATATGTGTGAGGGTGTTTAATGTGTGTTTGCTGTTGTATAATGTCTGATTACTGTTGTAACTGTTTGTATTATTTATTGTAGTTATTTCATTGTGAAAATGAGCACTCTAACCTCTGCCGGAACAATTAGAGGACACACAAGGGCAAGGTATTAATAAACTAATGACATACCGCTAGCAACAAATGTTCCCCATTTCACTGACATTAAATGTACACTGAAATGTAGCACAGGACATCACTTTTCATGTACAATATGTGTATGTTTAAAAAATATCAAAGGTGTTGTAATGGTTTTATGGGACTATGGTAGGAAAATATTTTGCTCACACTGTATACGTTAGCATTGTGTGTCATTGTTATACTATTTGTCAACTCTGGGTCATTGTATCTGTATGTGGTGCCATACTTAGAATGACATTTTACTGCCAATAAAAACTGACTCTAAGCAACTGTTTGCAGGATGAAGTG

Function

NR:

description
leucine-rich repeat-containing protein 75B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605771.2 True 3409 mRNA 0.45 4 23814802 23832541

Neighbor

gene id symbol gene type direction distance location
LOC110525555 LOC106585499 coding downstream 35082 23757804 ~ 23779720 (-)
LOC110525554 LOC106585497 coding downstream 63964 23730000 ~ 23750838 (-)
LOC110525553 LOC106585496 coding downstream 85823 23718380 ~ 23728979 (-)
LOC110525552 LOC106585495 coding downstream 96972 23713875 ~ 23717830 (-)
LOC110525551 LOC106585494 coding downstream 104574 23706557 ~ 23710228 (-)
LOC110525220 anapc5 coding upstream 17469 23850010 ~ 23855515 (-)
LOC110525561 LOC106585505 coding upstream 56113 23888654 ~ 23911739 (-)
LOC110525564 NA coding upstream 83255 23915796 ~ 23918064 (-)
LOC110525565 LOC106585509 coding upstream 111345 23943886 ~ 23948503 (-)
LOC110525566 apja coding upstream 137547 23970088 ~ 23972273 (-)
G487553 NA non-coding downstream 85266 23729308 ~ 23729536 (-)
G487546 NA non-coding downstream 110543 23703534 ~ 23704259 (-)
G487538 hnf1a non-coding downstream 115287 23697218 ~ 23699515 (-)
G487620 NA non-coding upstream 7221 23839762 ~ 23839997 (-)
G487628 NA non-coding upstream 25321 23857862 ~ 23863007 (-)
G487650 NA non-coding upstream 81825 23914366 ~ 23915707 (-)
G487655 NA non-coding upstream 95351 23927892 ~ 23928124 (-)
G487656 NA non-coding upstream 96710 23929251 ~ 23929771 (-)
LOC110525180 hps4 other downstream 229248 23582127 ~ 23587892 (-)
G487016 NA other downstream 422740 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 428895 23385534 ~ 23385907 (-)
G486953 NA other downstream 561441 23251286 ~ 23258106 (-)
G488386 NA other upstream 520992 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 828356 24655788 ~ 24715090 (-)
G489038 NA other upstream 1273664 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1664422 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2447166 26271759 ~ 26283169 (-)

Expression


Co-expression Network