LOC110525559 (LOC106585501)


Basic Information

Item Value
gene id LOC110525559
gene name LOC106585501
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23841475 ~ 23847341 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605772.2
gttcCCCTGGGCAGGAAAATGGTCAGAAAATCCCTGGTGGCTGGGCTGGTAGTTTTGCTGGTGGCTGCAGTGGGAGTGTTCGTGGGGGTGTTCATGGGGATGGGAAACAAGAGCCCCATCTCCCCCTCAGACCATTTCTACTCCAAAGCTGCCGTGGCTGCAGATGCTGGAACGTGCTCTGAGGTGGGGAGgGACATTCTGAAGAGGAATGGCTCAGCGGTGGATGCATCTATCGCTGCCCTTCTCTGTGTTGGCCTCCTGAACGCTCACAGCATGGGCATTGGAGGGGGGCTCTTCTTCACGATCTATAACGCTTCCACAGGGAAGGTTGAAACCATTGACGCGAGGGAGACAGCACCCATGAACGCGACAGAAGACATGTTTGGCAATAACACCCAGCTTTCTCGGAAAGGTGGATTGTCTATTGCCATTCCTGGGGAGATCCGTGGTTACGAAATGGCACACAGGAGACATGGCAGGCTGCCATGGAAGGATCTGTTTGAGCCAAGCATTGCTTTGGCACGCATCGGTTTCCCTATAGGCAAAGCCCTGGCCAAAGCCATCTCCAAGAACAAGGACGCTATTCAAGGAGATGCCAATATGTGTGAAGTGTTCTGTGACTCCCAGAAAAACATCCTGAAGGAAAATGACATCGTTAAATTTCCCAAATTAGCAGACACCTATGAGAGGATAGCAGAGGAGGGACCGAATGTTTTTTACAATGGGACAATGGCACAGACAattgtggatgacatccaggcaGCAGGAGGGATTATAACCCTGGAGGACCTGCTGGAGTACCGGCCTGTGTTGAATGAGAACCCACTGAAGCTGACCGTGGGAGAGTACACCATGCACGTCCCAGACGCCCCCTCCAGCGGCCCAGTCCTGGCACTCATACTCAACATAGTGGACGGGTATAATTTTACTGGCACGAGTGTCTCTACGGCCGAAAAAAAGACTTTGACATATCACCGCATCGTGGAAGCATTCCGATTTGCTTATGCCAAGAGGAGCAGACTAGGGGACCCACGCTATCTCAATATCACTGATCTCATCCACAACATGACCTCAGACTACTTTGCTGATGGGATCAGGAGTAAGATCACAGATGACACCACTCATCCCGACAGCTACTATGAGCCAGAATATTTTGTCCCTGACAATCACGGAACAGCACACCTGTCCGTCATAGCAGAGGATGGAAGTGCTGTGGCTGCCACCAGCACAATCAATCTATATTTTGGCTCCAAAGTCATGTCCCGATCAACTGGCATCATTTTCAATGATGAGATGGATGACTTCAGCTCTCCACACATCACCAATGGCTTTGGAATCCCTCCATCTCCTAACAACTTCATCCAGCCTGGTAAAAGGCCTCTATCTTCTATGTGCCCAACTATTATCTTGGACAAAGACAATAGAGTTAAAATGGTGGTGGGAGCCTCTGGTGGAACAAAGATCACCACAGCGACTGCCCTAGTGATTCTGAATTCCCTGttctttgactacgacctcaaaAAAGCTGTGACACAACCTCGAATTCACAATCAACTTAACCCAAATATGACAGTAGTGGAGCATGGCTTTGAAAAGaGCGTATTAGATGGTCTGGCACAGAAGAACCATGTAACAGAGCTGCTGATGACTCCTGGATCAGTAGTTCAGGCGGTGGTGCGACAGGGGGAGCGGCTCTGTGCTGAGTCCGACCCCAGAAAAGGGGGTTATCCAGCGGGCTACTGAGTCTCCATAAAGAAACAGGGCCATTAAGAGACAGGGCCATAGAGAGGCCGTGTATCTGCAATGAAACAATGGCTCCTCAAGGAGGCACAGCCACTTTTTCTTCAGCCTAAATTCCTTTCAAGACATGGAAAATGACTTTATTCCACATCAATACCTCCTCTCTTCACACCAAATAATCAGCAACTTTTATTTGCTTTTATTTCAGCattatttatttttgtgttttgAAAAAGAAGTGCGATTGCAACTCTGAGAGTGGCATTTTTAAAATCCTTGCTGTATCAAGAGATCCTTGTCAATTATCCTAAAGAAAGAAGTTTATTTATGCAATGCAGTGGGGTAGCAGAACGCTGGACTGTAACTGTCATTTCCTGCTGGTTGTAAATACCAATGGGCCAGAACTGAAATGGACACCATGGATCACCTGATGTACATTCTGAAATAGTTTGCTTATGAAATATTAGCCAACATATTAGTCAATTTACTCTGTGATGATGAGCAATCATTCTGTTTGACAGAAAAATAGCCATTTATCTGAGATTTAAGAAAGGTCATGTTTTAGGGGATAATGTGAACACCAATATGAAAGGTTGTCAAAGTAGTTTGTCTCTGTCCATTGAACAAATCAAATATAGAGAAATTACTGTTTCGTCTCTCCATCAAGGAAAAATGGTCTGTATGTTTTAACCATGTAAAATACCACAGTTGGTCACTGAAAACTCCTCGACTTCCACCTCAGGTCTTAACAGGTCAGGTTGTCAGATCTGTTGGTGCTTTATGGGTTGgctaaagcacaaacagatctgtcaACCAGGCTACAGGTCTACCATCTGCCTTATGAAGATGTTGGTCACAGGTagctacatttttattttcatgagAATTCTGATCTGTAACTCTAAAACAGTGATTTCTGTTTTACTGATTTCATCTCAACTCTGCCCATTGCCCATGGGGGCCTTCTGTTAATAAGGGCTCAAATATGGCTGCCATTGACCTATTCAAAtggtatttttatatttttttgtgatgagAATTGTTAAGAAAGACACATTTTTAATGTTTAATATCGAGTAAGTGAATttagtgtatttaaaaaaatacatgtgcagatatatttttttaaacttgcaTTGTTCTCATGCCATGCTTGTTGCCATGCTTGTTGCCATGCTTGTTGCCATGCTTGTTGCCATGCTT

Function

NR:

description
gamma-glutamyltranspeptidase 1-like

GO:

id name namespace
GO:0006749 glutathione metabolic process biological_process
GO:0003840 obsolete gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605772.2 True 2943 mRNA 0.45 12 23841475 23847341

Neighbor

gene id symbol gene type direction distance location
ggt5a LOC106585500 coding upstream 40324 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 138184 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 231648 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 235094 23596212 ~ 23606381 (+)
LOC110525542 NA coding upstream 270823 23560898 ~ 23570652 (+)
LOC110525560 LOC106585504 coding downstream 10513 23857854 ~ 23884968 (+)
LOC110525563 LOC106585507 coding downstream 64400 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 78505 23925846 ~ 23941878 (+)
LOC110525570 LOC106585512 coding downstream 194688 24042029 ~ 24042359 (+)
LOC110525569 LOC106585512 coding downstream 195179 24042520 ~ 24046202 (+)
G487228 NA non-coding upstream 4446 23836556 ~ 23837029 (+)
G487188 NA non-coding upstream 18726 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding upstream 24150 23814829 ~ 23817325 (+)
G487168 NA non-coding upstream 109503 23731045 ~ 23731972 (+)
G487161 NA non-coding upstream 118154 23721089 ~ 23723321 (+)
G487236 NA non-coding downstream 700 23848041 ~ 23848259 (+)
G487248 NA non-coding downstream 28787 23876128 ~ 23876451 (+)
G487249 NA non-coding downstream 29477 23876818 ~ 23877024 (+)
G487255 LOC106585505 non-coding downstream 42246 23889587 ~ 23891179 (+)
G487257 LOC106585505 non-coding downstream 45860 23893201 ~ 23894262 (+)
G487146 LOC106585492 other upstream 173548 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 309676 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 649558 23079630 ~ 23197514 (+)
G486127 NA other upstream 1167023 22674242 ~ 22674452 (+)
G485780 NA other upstream 1396856 22441316 ~ 22444619 (+)
G488049 NA other downstream 732620 24579961 ~ 24586313 (+)
G488078 NA other downstream 783628 24630969 ~ 24631396 (+)
G488258 NA other downstream 1091428 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1791520 25638816 ~ 25641178 (+)

Expression


Co-expression Network