LOC110525560 (LOC106585504)


Basic Information

Item Value
gene id LOC110525560
gene name LOC106585504
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23857854 ~ 23884968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052046.1
ACGGGATATTTTTGTGGTGGTACAATTAGAAAATGACGGTGGAAGAAATGACGGTGGAAATATTTTGATTTGGTACATGAAAATGTAACAGGAAAAGTAAATTTGATGGAAACAAATCTCtgatgagaaaatgtgcatattgtttttatgcggATGTGAGAATATGCGCATGAAATTCTGTCGACAATTGGATGTGAAGAAGACATACCTACACAAATCAAGTTTAAGACGGCTCTCTACTAAACGAGCACAAATTTTAGGTAGCCTATCGGTTATGgcttgaatccccgagctgactagctatcgatgtgcccttgagcaaggcacttaaccttaatcGCTACTGTACGTCGTCTGCTAAATTATTAAAACGTACAATGGTGGATAGCAGTGAACAGCAGCAGTAAAGTTAACGCCCTTAAAATTGTGATTGGACATTATGGATACTGCTGCACGAGACTTCGATTCAATTGGTGGAATTTATGTCCATCAAATTACTCTCGCTGTCTAGTTTAATGCTCTAAATGCTGGTGGAAAGAAGGAAGATGTACATGAAGTGAGGATTCCTGAGTTTTTGCAATGGTCAGACTATCCCTTTATTGCCACACATTCCACAACTCGGAGTTGATATGAAGGCAGGGGCCTCGTCCATGTGGGCTTCATGCTGTGGTCTGCTGAATGAAGTCATGGGCACAGGGGCAGTGAGGGGCCAGCAGCCCGGGTTCGGAGCCAGTGCTGGACCCTTCCGGTTTGCCCCCAGCGCAGGATACTCCACATACCCACCCACAACCTCAGGGAGCCCCAGCCTTGTATGTAAGGCCTGTGGCCAGGCATTCTCGGTCTTCAGGAGGAAGTATATCTGCTGCGACTGTAAGAAGAGCTTCTGCACGCTGTGCTCCATGCTTCAGGAGAACTTGCGTATATGTGCCACATGTCACCTGCTGAAGGGGACAGCCTTCCAGAGACCACAGCTGATGCGGCTGAGGGTCAGAGACCTGCGGCAGTACCTGCTGCTACGCAACGTCCCCACAGACACATGCAGGGAGAAGGAGGACCTGGTGGAACTGGTGCTGTGTCACCAGGGGACCGAAAGGGAGGGGGACCCCGACATGGCTAGCTTCAACTCCCGCTCCCTCTACACCCCGCCCCCTTCCACCACACGCTCCGCCTCCGAGCTGTCTACTCTCTCCGCCTCTCAGGGGGAAGCGCTCAGCAGGAGCGACAGCTCAGGGACTACCAACCAGGATATAGGAGACGCTACATCTCTCTCCACCCTGAACCTGGAACCCAGTGAACACACACCAGAGGTGATCCCTCAGACGTGGCAGCGAGCACGGGCCTCTCTCTCAGACATCTCTTGCCTGAGGGACATCGAGGGTCTGTCCGTCAGACAACTGAAGGAGATCCTGGCCAGGAATTTTGTCAACTATTCAGGCTGCTGCGAGAAGTGGGAGCTGGTAGAGCGCGTCAGCCGCttgtacagagagacagaggagaacaggaagtCATTGGAAAACGTGAACACAGCTGTAACTTCAGTGGTGGCCTTGCCCCTTCCTCCCATCTGCATTGGAGGGATTGGAGAAGATCCGTGGCATGAAGTTTGAGGTGGTTGTTGACGAGACAACAGATGCAAGGGATTACAGCGTTCTAAACATCGTCATTGGTGTTGAAAACCAGTACTTTCTGATGGATGTCATTTTCATGGACAAATGCAACTACTCAACGTTTTCCCAATCATTACTAGCCTCCCTCCACAGCAACCATCTGAACCTGAATGATGCCTGGGCAGTGGTCACAGATAATGCCTCCTACTGACTGAAGGCATACAAGAAGGTTCTGAAAGGAGTGTTGCCCAACAGTGTTCATGTAGCCTGTCTCTGTCATGTCATCAATCTGGTGGGTGAGACCTAGCAGCACAACAAATACTTCTCTGAAGTTACATCACTTGTGACATGGATGAGATCTGTCTTCTTCGAGAAGTCTGCCAGAAAGAGAAGATGGATCGGGAGAAGGCCCAGCTGACCAACCTGGATGACAGCCTGTGTAGGATCTGCATGGATGCTGCGATTGACTGCGTCCTTCTGGAGTGTGGTCACATGGTCACCTGCACCAAGTGTGGTAAGCGGATGAGCGAGTG
>XM_036979686.1
CGGGATATTTTTGTGGTGGTACAATTAGAAAATGACGGTGGAAGAAATGACGGTGGAAATATTTTGATTTGGTACATGAAAATGTAACAGGAAAAGTAAATTTGATGGAAACAAATCTCtgatgagaaaatgtgcatattgtttttatgcggATGTGAGAATATGCGCATGAAATTCTGTCGACAATTGGATGTGAAGAAGACATACCTACACAAATCAAGTTTAAGACGGCTCTCTACTAAACGAGCACAAATTTTAGGTAGCCTATCGGTTATGgcttgaatccccgagctgactagctatcgatgtgcccttgagcaaggcacttaaccttaatcGCTACTGTACGTCGTCTGCTAAATTATTAAAACGTACAATGGTGGATAGCAGTGAACAGCAGCAGTAAAGTTAACGCCCTTAAAATTGTGATTGGACATTATGGATACTGCTGCACGAGACTTCGATTCAATTGGTGGAATTTATGTCCATCAAATTACTCTCGCTGTCTAGTTTAATGCTCTAAATGCTGGTGGAAAGAAGGAAGATGTACATGAAGTGAGGATTCCTGAGTTTTTGCAATGGTCAGACTATCCCTTTATTGCCACACATTCCACAACTCGGAGTTGATATGAAGGCAGGGGCCTCGTCCATGTGGGCTTCATGCTGTGGTCTGCTGAATGAAGTCATGGGCACAGGGGCAGTGAGGGGCCAGCAGCCCGGGTTCGGAGCCAGTGCTGGACCCTTCCGGTTTGCCCCCAGCGCAGGATACTCCACATACCCACCCACAACCTCAGGGAGCCCCAGCCTTGTATGTAAGGCCTGTGGCCAGGCATTCTCGGTCTTCAGGAGGAAGTATATCTGCTGCGACTGTAAGAAGAGCTTCTGCACGCTGTGCTCCATGCTTCAGGAGAACTTGCGTATATGTGCCACATGTCACCTGCTGAAGGGGACAGCCTTCCAGAGACCACAGCTGATGCGGCTGAGGGTCAGAGACCTGCGGCAGTACCTGCTGCTACGCAACGTCCCCACAGACACATGCAGGGAGAAGGAGGACCTGGTGGAACTGGTGCTGTGTCACCAGGGGACCGAAAGGGAGGGGGACCCCGACATGGCTAGCTTCAACTCCCGCTCCCTCTACACCCCGCCCCCTTCCACCACACGCTCCGCCTCCGAGCTGTCTACTCTCTCCGCCTCTCAGGGGGAAGCGCTCAGCAGGAGCGACAGCTCAGGGACTACCAACCAGGATATAGGAGACGCTACATCTCTCTCCACCCTGAACCTGGAACCCAGTGAACACACACCAGAGGTGATCCCTCAGACGTGGCAGCGAGCACGGGCCTCTCTCTCAGACATCTCTTGCCTGAGGGACATCGAGGGTCTGTCCGTCAGACAACTGAAGGAGATCCTGGCCAGGAATTTTGTCAACTATTCAGGCTGCTGCGAGAAGTGGGAGCTGGTAGAGCGCGTCAGCCGCttgtacagagagacagaggagaacaggaagtCATTGGAAAACGTGAACACAGCTGTAACTTCAGTGGTGGCCTTGCCCCTTCCTCCCATCTGCATTGGAGGGATTGGAGGTAAGGTATCTGAAAAAGATCGGGAGAAGGCCCAGCTGACCAACCTGGATGACAGCCTGTGTAGGATCTGCATGGATGCTGCGATTGACTGCGTCCTTCTGGAGTGTGGTCACATGGTCACCTGCACCAAGTGTGGTAAGCGGATGAGCGAGTGTCCCATCTGCAGGCAGTACGTTGTGAGAGCTGTGCACGTCTTCAAGTCCTAATGTCTCAACCCATCACCACCGTCTCAGAAcatcttcaacaaaacattaatctcCAGAGAAACGGAGATCTGTTCCGTCACAGTCCATACTGGGAGACTGCCTCCATGCTCTTACCACCAGTACTTCTTGTTGTGGGACTTCATGTTTTCATCCCCTGAAACGCTTACATTATTTGCACACTTAAACATGACTATTAAAAATGCAGTGTTCTCTTTTTACCTTGTATTATTTAGTCTGACTAATCAGTATTTGAAGGAAAAAAGGGCAGCAGTCTACCCTCGTATTATTCCATTACTAAACACAACCTTGACTTGTTCCTATCAAGAATGTGAGCTATTCAATCACATGTGCATTGTTGTCTAACATGACGAATCACTTTCGAATCTGCCTGCTATGAACTGTAGCATTTGCTGCAAATAACTGCATATCTTAGTAATTCTGAAGAAAATACTGTACTGTGCAACAGGATGGGGGATGAGCAAATTAGAGGTCTATTTGGATTCAAAACAAATATCCAATGTCATTTGCTCTTTTGTCATGTCTTAGCACTGAGTGTTAAGATGGAAAAGAAAAACAGGTGCTAAATACATTCAAATGTTTTTCCAACTTAAAAATTGTGGATTTCTTTTTCATTAATATTTTCCATTTTCTTTTGAAAGTGGAAGGAATAGTTTGTTATTAATTGATAAATGATTGTAGTCAACACAGAACTAACTAATCAAAGAGAGCTACAACTTAATTAACACTGGAATATAAAGTGtgtctatacatatatatatatattagtaccattgtagaataatagggaagacatcaacactaggaaataacacatggaatcatgtaaaaataaataatgttaaAGCAATCTATTTTACatgtgatattcttc
>XM_036979687.1
ATATTTTTGTGGTGGTACAATTAGAAAATGACGGTGGAAGAAATGACGGTGGAAATATTTTGATTTGGTACATGAAAATGTAACAGGAAAAGTAAATTTGATGGAAACAAATCTCtgatgagaaaatgtgcatattgtttttatgcggATGTGAGAATATGCGCATGAAATTCTGTCGACAATTGGATGTGAAGAAGACATACCTACACAAATCAAGTTTAAGACGGCTCTCTACTAAACGAGCACAAATTTTAGGTAGCCTATCGGTTATGgcttgaatccccgagctgactagctatcgatgtgcccttgagcaaggcacttaaccttaatcGCTACTGTACGTCGTCTGCTAAATTATTAAAACGTACAATGGTGGATAGCAGTGAACAGCAGCAGTAAAGTTAACGCCCTTAAAATTGTGATTGGACATTATGGATACTGCTGCACGAGACTTCGATTCAATTGGTGGAATTTATGTCCATCAAATTACTCTCGCTGTCTAGTTTAATGCTCTAAATGCTGGTGGAAAGAAGGAAGATGTACATGAAGTGAGGATTCCTGAGTTTTTGCAATGGTCAGACTATCCCTTTATTGCCACACATTCCACAACTCGGAGTTGATATGAAGGCAGGGGCCTCGTCCATGTGGGCTTCATGCTGTGGTCTGCTGAATGAAGTCATGGGCACAGGGGCAGTGAGGGGCCAGCAGCCCGGGTTCGGAGCCAGTGCTGGACCCTTCCGGTTTGCCCCCAGCGCAGGATACTCCACATACCCACCCACAACCTCAGGGAGCCCCAGCCTTGTATGTAAGGCCTGTGGCCAGGCATTCTCGGTCTTCAGGAGGAAGTATATCTGCTGCGACTGTAAGAAGAGCTTCTGCACGCTGTGCTCCATGCTTCAGGAGAACTTGCGTATATGTGCCACATGTCACCTGCTGAAGGGGACAGCCTTCCAGAGACCACAGCTGATGCGGCTGAGGGTCAGAGACCTGCGGCAGTACCTGCTGCTACGCAACGTCCCCACAGACACATGCAGGGAGAAGGAGGACCTGGTGGAACTGGTGCTGTGTCACCAGGGGACCGAAAGGGAGGGGGACCCCGACATGGCTAGCTTCAACTCCCGCTCCCTCTACACCCCGCCCCCTTCCACCACACGCTCCGCCTCCGAGCTGTCTACTCTCTCCGCCTCTCAGGGGGAAGCGCTCAGCAGGAGCGACAGCTCAGGGACTACCAACCAGGATATAGGAGACGCTACATCTCTCTCCACCCTGAACCTGGAACCCAGTGAACACACACCAGAGGTGATCCCTCAGACGTGGCAGCGAGCACGGGCCTCTCTCTCAGACATCTCTTGCCTGAGGGACATCGAGGGTCTGTCCGTCAGACAACTGAAGGAGATCCTGGCCAGGAATTTTGTCAACTATTCAGGCTGCTGCGAGAAGTGGGAGCTGGTAGAGCGCGTCAGCCGCttgtacagagagacagaggagaacaggaagtCATTGGAAAACGTGAACACAGCTGTAACTTCAGTGGTGGCCTTGCCCCTTCCTCCCATCTGCATTGGAGGGATTGGAGATCGGGAGAAGGCCCAGCTGACCAACCTGGATGACAGCCTGTGTAGGATCTGCATGGATGCTGCGATTGACTGCGTCCTTCTGGAGTGTGGTCACATGGTCACCTGCACCAAGTGTGGTAAGCGGATGAGCGAGTGTCCCATCTGCAGGCAGTACGTTGTGAGAGCTGTGCACGTCTTCAAGTCCTAATGTCTCAACCCATCACCACCGTCTCAGAAcatcttcaacaaaacattaatctcCAGAGAAACGGAGATCTGTTCCGTCACAGTCCATACTGGGAGACTGCCTCCATGCTCTTACCACCAGTACTTCTTGTTGTGGGACTTCATGTTTTCATCCCCTGAAACGCTTACATTATTTGCACACTTAAACATGACTATTAAAAATGCAGTGTTCTCTTTTTACCTTGTATTATTTAGTCTGACTAATCAGTATTTGAAGGAAAAAAGGGCAGCAGTCTACCCTCGTATTATTCCATTACTAAACACAACCTTGACTTGTTCCTATCAAGAATGTGAGCTATTCAATCACATGTGCATTGTTGTCTAACATGACGAATCACTTTCGAATCTGCCTGCTATGAACTGTAGCATTTGCTGCAAATAACTGCATATCTTAGTAATTCTGAAGAAAATACTGTACTGTGCAACAGGATGGGGGATGAGCAAATTAGAGGTCTATTTGGATTCAAAACAAATATCCAATGTCATTTGCTCTTTTGTCATGTCTTAGCACTGAGTGTTAAGATGGAAAAGAAAAACAGGTGCTAAATACATTCAAATGTTTTTCCAACTTAAAAATTGTGGATTTCTTTTTCATTAATATTTTCCATTTTCTTTTGAAAGTGGAAGGAATAGTTTGTTATTAATTGATAAATGATTGTAGTCAACACAGAACTAACTAATCAAAGAGAGCTACAACTTAATTAACACTGGAATATAAAGTGtgtctatacatatatatatatattagtaccattgtagaataatagggaagacatcaacactaggaaataacacatggaatcatgtaaaaataaataatgttaaAGCAATCTATTTTACatgtgatattct

Function

NR:

description
E3 ubiquitin-protein ligase RNF34-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052046.1 False 2140 mRNA 0.50 10 23857854 23884024
XM_036979686.1 False 2681 mRNA 0.46 8 23857855 23884968
XM_036979687.1 True 2657 mRNA 0.46 8 23857859 23884966

Neighbor

gene id symbol gene type direction distance location
LOC110525559 LOC106585501 coding upstream 10513 23841475 ~ 23847341 (+)
ggt5a LOC106585500 coding upstream 56703 23791444 ~ 23801151 (+)
LOC110525549 hnf1a coding upstream 154563 23677474 ~ 23703291 (+)
LOC110525547 LOC106585491 coding upstream 248027 23608673 ~ 23609827 (+)
asgrl1 LOC106585488 coding upstream 251473 23596212 ~ 23606381 (+)
LOC110525563 LOC106585507 coding downstream 26773 23911741 ~ 23914297 (+)
LOC110525298 LOC106585338 coding downstream 40878 23925846 ~ 23941878 (+)
LOC110525570 LOC106585512 coding downstream 157061 24042029 ~ 24042359 (+)
LOC110525569 LOC106585512 coding downstream 157552 24042520 ~ 24046202 (+)
LOC110525573 LOC106585515 coding downstream 195323 24080291 ~ 24122599 (+)
G487236 NA non-coding upstream 9595 23848041 ~ 23848259 (+)
G487228 NA non-coding upstream 20825 23836556 ~ 23837029 (+)
G487188 NA non-coding upstream 35105 23757819 ~ 23822749 (+)
G487220 LOC106585502 non-coding upstream 40529 23814829 ~ 23817325 (+)
G487168 NA non-coding upstream 125882 23731045 ~ 23731972 (+)
G487255 LOC106585505 non-coding downstream 4619 23889587 ~ 23891179 (+)
G487257 LOC106585505 non-coding downstream 8233 23893201 ~ 23894262 (+)
G487273 NA non-coding downstream 30490 23915458 ~ 23915639 (+)
G487298 NA non-coding downstream 73013 23957981 ~ 23958251 (+)
G487146 LOC106585492 other upstream 189927 23653120 ~ 23667927 (+)
G487078 LOC106585486 other upstream 326055 23528740 ~ 23531799 (+)
LOC110525518 LOC106585474 other upstream 665937 23079630 ~ 23197514 (+)
G486127 NA other upstream 1183402 22674242 ~ 22674452 (+)
G485780 NA other upstream 1413235 22441316 ~ 22444619 (+)
G488049 NA other downstream 694993 24579961 ~ 24586313 (+)
G488078 NA other downstream 746001 24630969 ~ 24631396 (+)
G488258 NA other downstream 1053801 24938769 ~ 24939272 (+)
si:dkey-191c17.2 LOC106585342 other downstream 1753893 25638816 ~ 25641178 (+)

Expression


Co-expression Network