LOC110525565 (LOC106585509)


Basic Information

Item Value
gene id LOC110525565
gene name LOC106585509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23943886 ~ 23948503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979694.1
GTTTGGTATAAAATGTCTTCAAATCTCTATGCAGAGTCAAGCGTTCGATAACTATGATTTGTTTATGTAAATTATGATGCGACATGATTGTGTTACCTAAAGTGAGCATCACTGttattctctctatctttctctctgtctttctccctcgctcccactctcctcctcctcgaaGACCGGGGGCGTGGAAGTTCGAACTTGATTCTGAACGTTTAAACACTCGACTTTATTGTACCGATTTTCTTTTCAAGCAGTTGAAAGGCTAAGGGTACAGGATGACTACCTACATGGACAGAGGTGAAAAGCACGACCACGGCAAGTTCGTCTGTTTCGACCACATCACATTCTGGGTTGGAAATGCCAAACAGGCAGCATCTTACTATTGTAACAAGCTTGGATTTGAACCATTGGCCTATCAGGGTTTAGAGACAGGCTGCCGGGATGTGGTGTCCCATGTGGTCAAACAAGACAAGATTATTTATGTATTCGCATCCGCTCTCAATCCTGGAAACAAAGAAATGGGGGAGCATTTGGTCAAACATGGGGATGGAGCCAAGGACATTGCATTCACTGTGGAGAACTGTGATTACCTTGTGCAGAAAGCCAGAGAGCGTGGTGCCATCATAGTGAAAGAGCCCTATGTACTGGAGGACAAATATGGCAGGGTAAAACTAGCTGTTCTCCAGACGTATggggacaccacacacacatttgtgGAGAGGACTGCCTACAATGGGCTGTTCCTCCCAGGGTTCCATACTCCTCTCCACCGGGACCCCTTGTTGGCCAAGCTacccagtggattactgaacttCATTGACCATGTTGTGGGGAACCAGCCGGATGATGAGATGGTGCCTGTAGTGGAATGGTACCAGAAAAACCTGCTCTTCCACCGGTTCTGGTCAGTAGACGACAAGCAGCTGCAGACAGACTTCAGTGCACTGCGCTCCATTGTTGTGGCCAATTATGAAGAGACAGTGAAGATGCCCATTAATGAGCCAGCCATGGGTAAACGCAAGTCCCAGATCCAGGAGTATGTGGAGTACTATGGTGGCCCAGGTGTCCAGCACATCGCCATGAACACATCAGACATCATCACCGCAATCCGTAACCTGAAGGAGCGTGGCATGGAGTTCATGTGTGTGCCAGACACCTACTACCAGCTGCTGAGAAAGAATCTCCAACAATCGCAAGTCAGGGTCACTGAGGACCTGGACATTCTGGAGGAGCTGAAGATCTTAGTGGATTTTGATGACAATGGCTACCTGCTCCAGATCTTCACCAAGCCTGTTCAGGACCGTCCCACAGTGTTCCTGGAGGTCATTCAGAGACACAACCATCAGGGCTTTGGTGCAGGCAACTTCAAGGCTCTTTTCGAGGCCATCGAGGCAGACCAGAACGCTAGAGGGAACTTGACTATCCTGAAACCTAATGGAGTGTCTAACCAAATTTGAAGTACTGCTCTGATTTACACAATTTATATAATGTCCATCATCTCTGAAGCTTACATTTAATTTAGAACTATTGAAAATAATTTGTTCAACAATTTATATCTGAAGTGAACCAGAATCTAGTTAAATGACTTTGATGGATAAATTGCTGCTCTATGCACACACTATTCAAATTTAAATTATGATTGACATACCTTCTGGAGTCAAACGTAGGAATGATTGCTAATTATTCAAATAATATAGTGACGctaaaataacaaaaatatatttgactTGATGCCAATTTTAAATACAGtgatttcagaaagtattcataccccttgacttattccacattttgttgtgttacagcctgaattcaaaatggattaaaaaaatgtttttgtcacCCGtca
>XM_036979693.1
TCCCAACGAACAGCCAATAGGAAACCTCAATGAGTGAACCTCCTCTCGAGACTAAATACAAACACATGGCCGGCCTGACTGTTGAAATGATTGGGAGTGCATTATGTCTGTGTCTTTGCATTTCAGTTTGAAATATAACATAAGTAGAGAAGACCGGGGGCGTGGAAGTTCGAACTTGATTCTGAACGTTTAAACACTCGACTTTATTGTACCGATTTTCTTTTCAAGCAGTTGAAAGGCTAAGGGTACAGGATGACTACCTACATGGACAGAGGTGAAAAGCACGACCACGGCAAGTTCGTCTGTTTCGACCACATCACATTCTGGGTTGGAAATGCCAAACAGGCAGCATCTTACTATTGTAACAAGCTTGGATTTGAACCATTGGCCTATCAGGGTTTAGAGACAGGCTGCCGGGATGTGGTGTCCCATGTGGTCAAACAAGACAAGATTATTTATGTATTCGCATCCGCTCTCAATCCTGGAAACAAAGAAATGGGGGAGCATTTGGTCAAACATGGGGATGGAGCCAAGGACATTGCATTCACTGTGGAGAACTGTGATTACCTTGTGCAGAAAGCCAGAGAGCGTGGTGCCATCATAGTGAAAGAGCCCTATGTACTGGAGGACAAATATGGCAGGGTAAAACTAGCTGTTCTCCAGACGTATggggacaccacacacacatttgtgGAGAGGACTGCCTACAATGGGCTGTTCCTCCCAGGGTTCCATACTCCTCTCCACCGGGACCCCTTGTTGGCCAAGCTacccagtggattactgaacttCATTGACCATGTTGTGGGGAACCAGCCGGATGATGAGATGGTGCCTGTAGTGGAATGGTACCAGAAAAACCTGCTCTTCCACCGGTTCTGGTCAGTAGACGACAAGCAGCTGCAGACAGACTTCAGTGCACTGCGCTCCATTGTTGTGGCCAATTATGAAGAGACAGTGAAGATGCCCATTAATGAGCCAGCCATGGGTAAACGCAAGTCCCAGATCCAGGAGTATGTGGAGTACTATGGTGGCCCAGGTGTCCAGCACATCGCCATGAACACATCAGACATCATCACCGCAATCCGTAACCTGAAGGAGCGTGGCATGGAGTTCATGTGTGTGCCAGACACCTACTACCAGCTGCTGAGAAAGAATCTCCAACAATCGCAAGTCAGGGTCACTGAGGACCTGGACATTCTGGAGGAGCTGAAGATCTTAGTGGATTTTGATGACAATGGCTACCTGCTCCAGATCTTCACCAAGCCTGTTCAGGACCGTCCCACAGTGTTCCTGGAGGTCATTCAGAGACACAACCATCAGGGCTTTGGTGCAGGCAACTTCAAGGCTCTTTTCGAGGCCATCGAGGCAGACCAGAACGCTAGAGGGAACTTGACTATCCTGAAACCTAATGGAGTGTCTAACCAAATTTGAAGTACTGCTCTGATTTACACAATTTATATAATGTCCATCATCTCTGAAGCTTACATTTAATTTAGAACTATTGAAAATAATTTGTTCAACAATTTATATCTGAAGTGAACCAGAATCTAGTTAAATGACTTTGATGGATAAATTGCTGCTCTATGCACACACTATTCAAATTTAAATTATGATTGACATACCTTCTGGAGTCAAACGTAGGAATGATTGCTAATTATTCAAATAATATAGTGACGctaaaataacaaaaatatatttgactTGATGCCAATTTTAAATACAGtgatttcagaaagtattcataccccttgacttattccacattttgttgtgttacagcctgaattcaaaatggattaaaaaaatgtttttgtcacCCGtca

Function

NR:

description
4-hydroxyphenylpyruvate dioxygenase-like

GO: NA

KEGG:

id description
K00457 HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979694.1 False 1849 mRNA 0.44 14 23943886 23948238
XM_036979693.1 True 1826 mRNA 0.44 15 23943886 23948503

Neighbor

gene id symbol gene type direction distance location
LOC110525564 NA coding downstream 25822 23915796 ~ 23918064 (-)
LOC110525561 LOC106585505 coding downstream 32147 23888654 ~ 23911739 (-)
LOC110525220 anapc5 coding downstream 88371 23850010 ~ 23855515 (-)
LOC110525558 LOC106585502 coding downstream 111345 23814802 ~ 23832541 (-)
LOC110525555 LOC106585499 coding downstream 164166 23757804 ~ 23779720 (-)
LOC110525566 apja coding upstream 21585 23970088 ~ 23972273 (-)
LOC110525568 LOC106585513 coding upstream 76043 24024546 ~ 24031999 (-)
LOC110525567 LOC106585510 coding upstream 83566 24032069 ~ 24041920 (-)
LOC110525572 LOC106585514 coding upstream 111408 24059911 ~ 24071705 (-)
LOC110525317 dgcr6 coding upstream 124111 24072614 ~ 24079048 (-)
G487656 NA non-coding downstream 14115 23929251 ~ 23929771 (-)
G487655 NA non-coding downstream 15762 23927892 ~ 23928124 (-)
G487650 NA non-coding downstream 28179 23914366 ~ 23915707 (-)
G487628 NA non-coding downstream 80879 23857862 ~ 23863007 (-)
G487620 NA non-coding downstream 103889 23839762 ~ 23839997 (-)
G487670 NA non-coding upstream 5373 23953876 ~ 23954168 (-)
G487673 NA non-coding upstream 9071 23957574 ~ 23957782 (-)
G487681 NA non-coding upstream 19946 23968449 ~ 23968654 (-)
G487708 NA non-coding upstream 69242 24017745 ~ 24018026 (-)
G487662 NA non-coding upstream 71069 24019572 ~ 24023100 (-)
LOC110525552 LOC106585495 other downstream 226103 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 358332 23582127 ~ 23587892 (-)
G487016 NA other downstream 551824 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 557979 23385534 ~ 23385907 (-)
G486953 NA other downstream 690525 23251286 ~ 23258106 (-)
G488386 NA other upstream 405030 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 712394 24655788 ~ 24715090 (-)
G489038 NA other upstream 1157702 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1548460 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2331204 26271759 ~ 26283169 (-)

Expression


Co-expression Network