Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525567 |
| gene name | LOC106585510 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 24032069 ~ 24041920 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| splicing factor 3A subunit 1-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| K12825 | SF3A1, SAP114; splicing factor 3A subunit 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605783.2 | False | 2907 | mRNA | 0.51 | 15 | 24032069 | 24041920 |
| XM_021605784.2 | True | 2901 | mRNA | 0.51 | 15 | 24032069 | 24041920 |
24,022,000
24,024,000
24,026,000
24,028,000
24,030,000
24,032,000
24,034,000
24,036,000
24,038,000
24,040,000
24,042,000
24,044,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525568 | LOC106585513 | coding | downstream | 70 | 24024546 ~ 24031999 (-) |
| LOC110525566 | apja | coding | downstream | 59796 | 23970088 ~ 23972273 (-) |
| LOC110525565 | LOC106585509 | coding | downstream | 83566 | 23943886 ~ 23948503 (-) |
| LOC110525564 | NA | coding | downstream | 114005 | 23915796 ~ 23918064 (-) |
| LOC110525561 | LOC106585505 | coding | downstream | 120330 | 23888654 ~ 23911739 (-) |
| LOC110525572 | LOC106585514 | coding | upstream | 17991 | 24059911 ~ 24071705 (-) |
| LOC110525317 | dgcr6 | coding | upstream | 30694 | 24072614 ~ 24079048 (-) |
| dtx1 | LOC106585516 | coding | upstream | 87480 | 24129400 ~ 24184369 (-) |
| ccdc92 | LOC106585518 | coding | upstream | 169224 | 24211144 ~ 24224260 (-) |
| ncor2 | LOC106585520 | coding | upstream | 275992 | 24317912 ~ 24504123 (-) |
| G487662 | NA | non-coding | downstream | 8969 | 24019572 ~ 24023100 (-) |
| G487708 | NA | non-coding | downstream | 14043 | 24017745 ~ 24018026 (-) |
| G487681 | NA | non-coding | downstream | 63415 | 23968449 ~ 23968654 (-) |
| G487673 | NA | non-coding | downstream | 74287 | 23957574 ~ 23957782 (-) |
| G487670 | NA | non-coding | downstream | 77901 | 23953876 ~ 23954168 (-) |
| G487795 | NA | non-coding | upstream | 149330 | 24191250 ~ 24191474 (-) |
| G487798 | NA | non-coding | upstream | 152842 | 24194762 ~ 24195075 (-) |
| G487801 | NA | non-coding | upstream | 156146 | 24198066 ~ 24198697 (-) |
| G487805 | NA | non-coding | upstream | 160002 | 24201922 ~ 24202251 (-) |
| G487807 | NA | non-coding | upstream | 162961 | 24204881 ~ 24205232 (-) |
| LOC110525552 | LOC106585495 | other | downstream | 314286 | 23713875 ~ 23717830 (-) |
| LOC110525180 | hps4 | other | downstream | 446515 | 23582127 ~ 23587892 (-) |
| G487016 | NA | other | downstream | 640007 | 23390017 ~ 23392062 (-) |
| G487022 | bicdl1 | other | downstream | 646162 | 23385534 ~ 23385907 (-) |
| G486953 | NA | other | downstream | 778708 | 23251286 ~ 23258106 (-) |
| G488386 | NA | other | upstream | 311613 | 24353533 ~ 24353823 (-) |
| LOC110525585 | LOC106585524 | other | upstream | 618977 | 24655788 ~ 24715090 (-) |
| G489038 | NA | other | upstream | 1064285 | 25106205 ~ 25106570 (-) |
| G489511 | hmcn2 | other | upstream | 1455043 | 25496963 ~ 25497489 (-) |
| LOC110525606 | LOC106585545 | other | upstream | 2237787 | 26271759 ~ 26283169 (-) |
