LOC110525572 (LOC106585514)


Basic Information

Item Value
gene id LOC110525572
gene name LOC106585514
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24059911 ~ 24071705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605788.2
CTCAGCTTTCTATCCTCTCGTTCTCCATCTCCACCTTTCTCCCTGTCTGTCGTTGAGGGTTTCAAAGGATATCAACCGGGCCTGAGATAGGCTACTCATAAGCGATATTCAGCATTTAAGGTCAATTGATCAGGAGGAGAATGGATCCAGTTTGAGCATCTTGACTGATAAGTTGCCGAGTGTGATCCTGTAACCATGGCGACCTGTGGGCGTGGTTGCGTCCCGGCAGTGCGTTTCTGCCAAAGGCTGAACCGACTGAAGACCCTGGATGATGATTTGATGGTGACATCAATGAAGCGCTGCCTGACCATGGTGGACCTGGCCCTGCTGGGTGTTGGGGGCATGGTGGGCTCTGGTCTCTACGTCCTGACAGGCACTGTGGCCAAGGACACCGCAGGACCTGCCgtggtcctctccttcctcatAGCAGGCATCGCCTCCCTGATGGCCGCGCTCTGCTATGCTGAGTTCGGAGCTCGCGTGCCCAGAACGGGCTCAGCCTACATGTTCACCTATGTTTCTTGTGGAGAAATATGGGCCTTTCTCATTGGCTGGAACGTAGTGTTGGAGTACATGATTGGTGGGGCCGCGGTGGCGCGGGCGTGGAGTGGTTACCTGGACTCCATGTTTAACCACACTATCCAGAACTACACAGAGAACCACATAATGAAGTGGAATGTTCCCTATATCGCCCACTACCCTGACCTGCTGGCCGCCGGGATTCTAGTGGTTGCCACCATCTTCATAACCTTCGGAGTGCGAGTCTCTTCTTGGCTCAACCACATCTTCTCCGCTGTTAGTCTGGTTGTCATACTCTTCATCTTGGTGTTTGGCTTCGTGCTGGCAGATCCAGTCAACTGGAGCCAGAAAGAAGGAGGTTTTGCACCATTCGGTGTGTCTGGGGTTATGGCAGGCACAGCCACCTGCTTTTACGCATTTGTTGGCTTCGATGTGATTGCAGCCTCCAGCGAGGAGGCTAAGAACCCCCAGCGAGCCATTCCTATGGCCACAGCCATCTCCTTGTGCATGGCAGCCACAGCCTACATCCTGGTCTCCACTGTCCTCACTCTCATGGTGCCCTGGCACTCCCTCGATCCAAACTCAGCTCTGTCTGACGCCTTCTTCCGCCGAGGCTACAGCTGGGCTGGCTACATCGTGGCAGTAGGGTCCATCTGTGCCATGAACACAGTGCTCCTCAGcaacctcttctccctccctcggATTGTTTACGCTATGGCGGAGGATGGCCTCTTCTTCGCCTTCTTTGCCAAGGTCAACCCTGTCACCAAGGTCCCTGTGAATGCCATCTTGGTGTTTGGCCTCCTCATGGCCGTCATGGCCCTCATCTTTGACCTGGAGGCCCTGGTCCAGTTCCTGTCCATCGGCACCCTCCTGGCCTACACCTTTGTGGCAGCCAGTGTCATTGTGCTGCGCTTCCAGCCTGAGAAGGAGAAGACCAGTTCCAAGGCTAACTCCACTACCTCCCCTAACACCAACTACAACCCAGAGCCCTCACCCGAAGCCTCCGAGTCCCAGATCATAGCTCAGGACAGCGGGGAGCTGAAGGAGTATGAGTCCTTCTCAGACAAGCTACAGCTGGTGGAGATGCAGAAGACCAGGGAACGCAGCGCCCCAGGGGTGTTGAAGGCTCGCTGGGAGCCCTACCTGGGCAGGTTGCTAGGGGACTTTGAGCCGGGGGAGGTGGTGGCCTTCTCTGTGCTGGCTGTGATGGTGagctctgtgtccctctgtgccGTTTTTGTGTTTGGGAGTAACCAGCTGCAGCTGCCTACGTGGAGCTTCGCCGTGCTAATAGTCGTGTTTGGCTCAACCTTCCTCCTCAGCCTGCTCGTCATATATGCCCATGAACCACATATCAACACCAAAACCTTCCAGGTACCCTTGGTCCCATTCATCCCTGGTGCAAGCATCCTCATGAATGTGTTCCTAATGCTGAAGCTCAGCCCAATGACCTGGATCCGCTTTACCGTATGGGTGGCTGCAGGTCTACTGGTGTATTTTGGCTATGGGATATGGCACAGTAAGGAGGGCCTGAGGGAGCTGCAGCCCAAGGACATGGCTGCCAGGTACGTGGTGCTCCCTAGTGGCAGCCTGGTAGAGACAGTCCAGTCAGTGCAGCCGAACGGACACGGGGACGCCAGCGCCCTCCACACCACCCCCTCCCCCGCCCAGTCTGCTGAAGAGCAGCAGGCAAAGAGATGATGTGTGGGAACTAGGAAGGGAGCCATCTTTATTTCAGTGGGCCGTTTATCATCTATCTGCTCCTACTCATACATTAcctcactctcttctcctctgactTCCCTCTCGTGACTGGCCTCATACAATCAGTGTGTACTGCCACAAGGCTGTGTTTCTCTGCGTTAGTAAGTACACATCACACAAATGAGATTTACGCTCTCTCATTATGaaacatatttatatttatttttacatatTGTATCTCTTAATATGGGAACATAGTAATAAAGCTATCTAGCATTGTTTAGGATATTGCTATTGGTTATAATCActgtatttacaaaaaaaatggtAGATAAACCAGCACAGGTGTTATTTCCTTGTTAGCATTTCTCTCAACTCCTCAATTGATCTGCTTTTTAATGTCTCTCAGTCACTCACAATTGAATGTGTTTGGAAGTAGGATGGTGCTTTAGGTCATAGCATACATTGAGTCATGTTGATAAGCTGCATTTTTCATTTTGTAAGCACTGGAATGAATGGACCTTTGTTTACACACACCCATGTACAAACACATATTCACATTTGCTTtctctcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagcattatTCTTGCCTGAGGAGAGACTAGGTTCTGTCAGTGGGTCATGTGGGTCCACTTACAACCCCTGGGACCACCTCAAGATCCCCCTCATTCCCCCGCACTAGTGGCTGCTCAGCCAAACGCAAatcatttacatacattttctatTTTAATGATTATTTCGGACTTGTTTCATGTAGTTTCTGAGCTGTGAAACAGTCTATTTTATCATTTTAATTTTGCATTTCACTGATGGCATATCACACACATATTATGTTCTgttttgggatgtttttgtaCCTCGCTTCGTATCATAATGACCCGACTCCACTTGTTAATGTTCTCTGTCTCCATCACATGAGATTGTCACTCTCTTCTTCTAAGGCGGAGTTGGCCTTTCAACCTCTCACTTAATCCACTGACTCCCATCCAATGACCTCACTCACTCTTATGTGTCCCAGATTTTGCAATCAGCCTAATATCTACTAAGAATGGTTATTCCCCCAATGCACAAGAACTAGACAGCGACCCATTCCCCTTCTGTGTGCTAGCATGAGATTAGTTTATACAACCATCTAATATAAAAGCACCTGGATTATTTTAGCTATGGTTTTGTTCTCATTTCTCCTCATACACAACAGTGATAATGCGAGACGAGAGTTATAAACTTGTGTTTTAATATATGCTTTTTGTAAGGCAAGCACAAACCCAGTTCATGATGTACCTGAACAGGGTATTTGGTGCTGCTGTTTAGAAGCATATTAACAAACAGGGATTGAGCGTTTTGTCAGACTATGCCAGCCATAGGACATCTTTTATCCTCATGAGACCTCTGTAATCCGACAGATTTGCAGCAGTCCCTGCGGTTGACCAATAGCTTGATCTAGATTACATACACGCACAGATCACTCTCACTCGCAGTGCTGGATTACACTGACCTCCTCAGAGAGGGATTGCACTCTCACACCCAGTTACTCACTACCCTGTCTGATAGCACAGTGTTCGAGAGGGCAGTAAGATGTCATGACAATGTAACGTTGTCTCAACGTGATAATCATAACATTCCCATAGCTAAAGTTTTCAGTCAAGTCCTGAGAACGGATTATTTTGTTACCTATAAGGTGTATATTTGTTTGTCACGTTTGGAGATTGCGGTAAAACGTCTACGATTTATctgtataataataatgtaactACAGCATTGCCTTGATGTTATTAGCGTTTTCTATATATCACAGTCCTTAGAATGATGACAAATAAGCATGAGTCCCTCACTACCGGCTACCAACCTCACACGTGTCTGTAGCTCACCTTAGTGTTGTACTCAAAAAGATGTTTGTTTTAAAAGTCTCTTATTTATCACTATTTATTAGTTATTGTAAACATACATttgtatatgtaaatatatgaCACAAGCAACCAATGGCCTTAAAGATGTTTTCATGAGTACAGAATGATTCCCAAAGCTTACGTGAAATCTAAACAACTTGTTGTTCAGGTAGCTTTTCACCTCTATCCAAGTAGTTTACCCTGTTATAATCTCAGTATTTATTCATAGGATATTATATTGTAAACTACTATATTCCATTCAATTGATTTCAACAACAGATACAGCCTTTGAAGTAATCAAATGTTGGTTAATGTGGGGATAACAAAATATTAAATTGATTTTTGTACAACTTTGCACATAGTTTAAGATTTTAACTGCAAACGACTGTATGTGTCTCTCTACCAGTGTGTCTCTGTTTTTCCTGCGTGGGCAAGTGACAGGTGTTGACACTATGGTGCTTTTGGCAAGCTGAACATTTCCTCACCTCGATGAGTTACGCTCTCTGTCTTGTGTGGCAGTAAGCACAATGCGCTATGGGCTCTGACTGTACCTATGTACTCTGTACTTACACATTCAAATTCTAAGTATTTTTTGTTGTATAAAGTCTAAAAGAAGCTGTGTTATTTCgtgacaaataaatgttttgaagCAGCA

Function

NR:

description
cationic amino acid transporter 4-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13866 SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605788.2 True 4879 mRNA 0.47 5 24059911 24071705

Neighbor

gene id symbol gene type direction distance location
LOC110525567 LOC106585510 coding downstream 17991 24032069 ~ 24041920 (-)
LOC110525568 LOC106585513 coding downstream 27912 24024546 ~ 24031999 (-)
LOC110525566 apja coding downstream 87638 23970088 ~ 23972273 (-)
LOC110525565 LOC106585509 coding downstream 111408 23943886 ~ 23948503 (-)
LOC110525564 NA coding downstream 141847 23915796 ~ 23918064 (-)
LOC110525317 dgcr6 coding upstream 909 24072614 ~ 24079048 (-)
dtx1 LOC106585516 coding upstream 57695 24129400 ~ 24184369 (-)
ccdc92 LOC106585518 coding upstream 139439 24211144 ~ 24224260 (-)
ncor2 LOC106585520 coding upstream 246207 24317912 ~ 24504123 (-)
LOC118965019 LOC106585477 coding upstream 485782 24557487 ~ 24566324 (-)
G487662 NA non-coding downstream 36811 24019572 ~ 24023100 (-)
G487708 NA non-coding downstream 41885 24017745 ~ 24018026 (-)
G487681 NA non-coding downstream 91257 23968449 ~ 23968654 (-)
G487673 NA non-coding downstream 102129 23957574 ~ 23957782 (-)
G487670 NA non-coding downstream 105743 23953876 ~ 23954168 (-)
G487795 NA non-coding upstream 119545 24191250 ~ 24191474 (-)
G487798 NA non-coding upstream 123057 24194762 ~ 24195075 (-)
G487801 NA non-coding upstream 126361 24198066 ~ 24198697 (-)
G487805 NA non-coding upstream 130217 24201922 ~ 24202251 (-)
G487807 NA non-coding upstream 133176 24204881 ~ 24205232 (-)
LOC110525552 LOC106585495 other downstream 342128 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 474357 23582127 ~ 23587892 (-)
G487016 NA other downstream 667849 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 674004 23385534 ~ 23385907 (-)
G486953 NA other downstream 806550 23251286 ~ 23258106 (-)
G488386 NA other upstream 281828 24353533 ~ 24353823 (-)
LOC110525585 LOC106585524 other upstream 589192 24655788 ~ 24715090 (-)
G489038 NA other upstream 1034500 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1425258 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2208002 26271759 ~ 26283169 (-)

Expression


Co-expression Network