ccdc92 (LOC106585518)


Basic Information

Item Value
gene id ccdc92
gene name LOC106585518
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24211144 ~ 24224260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605798.2
GTTGTAGCTGAGGGTGATAAGAAGACTGACACAGCCCATCCATCCTGTTTCTGCCGACAGAAGAGGAGCGTTTGGCGTCATCAACGATAACAATGCCTAACATGGCAGAACGGATTTAGCCACTGTAGCAATTACGACAAGAATTTATATATTAGAGAATATTCGACGATATTATCATATTTCTTTAGAGTAGGTATCACGGTCTCTAGGACTGGTGTGTGTCTGCTGCATTGTCTGCCATGGCATCCCACAATGGTACCCTGGAGAATCAGCTGCACAGCGCCCAGAAGAACCTGCTCTTCCTCCAGCAGGACCATGCCAAAACACTGAAAGGTCTACATGCAGAGATCCGCAGACTACAACAGCACTGCACAGACTTGACCTATGAGCTGACAGTGAGAAGTTCAGATCCAACAGaCAGCAGTGAGGCACGCTGCAGGGAACTGCACAGTAAGTGCGAGGAGCTGGAGGCTCAGCtaaaggtgaaggaggaggagaacacgGAGCTGCTGAGAGACCTGGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCatcaaggagagggagaagaagtaCCTGGAGGAGCTGAAGATGAAGAGCCACAAGCTGGCTGTCCTGTCTGGGGAGCTAGAGCAGAGAGCCAGCACCATCGCCTACCTCACCTCTCAGCTCCACACCACCAAGAAAAAGCTCCTGGCAGGTAGTTCCTCCGAGGCCAGTCCTAACGTCAGCCCTGTGAGCTCCTACAAGCCCACCCCTCCCCCAGCTAAAGACCGGCAGCCTGGCCCTGAGACCCCTCGCCGCCGCATGAAGAAGAGCCTGTCTCAGCCGCTGCACTCTGAGTTAACCGAGGTATACCGGCTGGGTTCTGATGGGAGGAGGATGGTCCTACGGGAGGCGGTGGATGCCATGCCTGACCCCACCCCCTTCCTGCAGGCATCTCGAGACACCCCTGATCTGCAGATGGTACGAGACCGGCCTGCCGTCATCCCCCCCATCGCCTGTGATCGCTCGTCCAGCCCCCGCCACAGCCCGGCACGGGACCGCCAGCATCATGCACACGTGGGCGTTGCACACCGCACCCACCATTGCACCCCTCCCGTGGTGTCTCCTCAGCCAGAGCTGGAGATCCTGGCTGTGGACCAGGTCAATGGGGGCAAGGTGGTGAGGAAGCGCTCTGGGGCAGACAGAACAGTTTAACACATTCTCACACAAGCAAGAAGGAGCATCACCTACTGTATAAATCACCTGCTTTTTATGCAACACTGCAATGAGCAAAGAAAGTAAAATGGAAAACAGACAAAAATACCACCATGCCAAATGTTTTGAAACACATGTGACTTACACATCCTgtcctttttttgctttgtctcaTCTCACTCTGTCATACATTGTGCACATAAACTTATCCGCCAAACATCTGCATTATTGCCTGCTTACCTGGTGAATCCATACACATATTATCATCGTTAACTACCAGGGGTGAAAGTATAGTTTATTTCTTACCAGTGCGGGACTACAGAAATTACAGTCTACTTTGCTGACACGGACAAACGGATCAATAAAAACAATGTTGTCTGATCCATATAATTGGTCTACGAAAAGGGGAGACACAAATACAATATGACGACCATCTAACCTAGAGGAGGAAGTTATTgtccaaaaaacaaacaaaagtggcACTGACCCAATGACA
>XM_021605797.2
TCCCATGATGCATCGCCTTATTTTGTTGTAGCTGAGGGTGATAAGAAGACTGACACAGCCCATCCATCCTGTTTCTGCCGACAGAAGAGGAGCGTTTGGCGTCATCAACGATAACAATGCCTAACATGGCAGAACGGATTTAGCCACTGTAGCAATTACGACAAGAATTTATATATTAGAGAATATTCGACGATATTATCATATTTCTTTAGAGTCTCTAGGACTGGTGTGTGTCTGCTGCATTGTCTGCCATGGCATCCCACAATGGTACCCTGGAGAATCAGCTGCACAGCGCCCAGAAGAACCTGCTCTTCCTCCAGCAGGACCATGCCAAAACACTGAAAGGTCTACATGCAGAGATCCGCAGACTACAACAGCACTGCACAGACTTGACCTATGAGCTGACAGTGAGAAGTTCAGATCCAACAGaCAGCAGTGAGGCACGCTGCAGGGAACTGCACAGTAAGTGCGAGGAGCTGGAGGCTCAGCtaaaggtgaaggaggaggagaacacgGAGCTGCTGAGAGACCTGGAGCAGAAGAACGCCATGATCTCTGTCCTGGAGAACACCatcaaggagagggagaagaagtaCCTGGAGGAGCTGAAGATGAAGAGCCACAAGCTGGCTGTCCTGTCTGGGGAGCTAGAGCAGAGAGCCAGCACCATCGCCTACCTCACCTCTCAGCTCCACACCACCAAGAAAAAGCTCCTGGCAGGTAGTTCCTCCGAGGCCAGTCCTAACGTCAGCCCTGTGAGCTCCTACAAGCCCACCCCTCCCCCAGCTAAAGACCGGCAGCCTGGCCCTGAGACCCCTCGCCGCCGCATGAAGAAGAGCCTGTCTCAGCCGCTGCACTCTGAGTTAACCGAGGTATACCGGCTGGGTTCTGATGGGAGGAGGATGGTCCTACGGGAGGCGGTGGATGCCATGCCTGACCCCACCCCCTTCCTGCAGGCATCTCGAGACACCCCTGATCTGCAGATGGTACGAGACCGGCCTGCCGTCATCCCCCCCATCGCCTGTGATCGCTCGTCCAGCCCCCGCCACAGCCCGGCACGGGACCGCCAGCATCATGCACACGTGGGCGTTGCACACCGCACCCACCATTGCACCCCTCCCGTGGTGTCTCCTCAGCCAGAGCTGGAGATCCTGGCTGTGGACCAGGTCAATGGGGGCAAGGTGGTGAGGAAGCGCTCTGGGGCAGACAGAACAGTTTAACACATTCTCACACAAGCAAGAAGGAGCATCACCTACTGTATAAATCACCTGCTTTTTATGCAACACTGCAATGAGCAAAGAAAGTAAAATGGAAAACAGACAAAAATACCACCATGCCAAATGTTTTGAAACACATGTGACTTACACATCCTgtcctttttttgctttgtctcaTCTCACTCTGTCATACATTGTGCACATAAACTTATCCGCCAAACATCTGCATTATTGCCTGCTTACCTGGTGAATCCATACACATATTATCATCGTTAACTACCAGGGGTGAAAGTATAGTTTATTTCTTACCAGTGCGGGACTACAGAAATTACAGTCTACTTTGCTGACACGGACAAACGGATCAATAAAAACAATGTTGTCTGATCCATATAATTGGTCTACGAAAAGGGGAGACACAAATACAATATGACGACCATCTAACCTAGAGGAGGAAGTTATTgtccaaaaaacaaacaaaagtggcACTGACCCAATGACA

Function

NR:

description
coiled-coil domain-containing protein 92-like

GO: NA

KEGG:

id description
K16452 CCDC92; coiled-coil domain-containing protein 92

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605798.2 False 1704 mRNA 0.51 4 24211144 24224236
XM_021605797.2 True 1716 mRNA 0.51 4 24211144 24224260

Neighbor

gene id symbol gene type direction distance location
dtx1 LOC106585516 coding downstream 26775 24129400 ~ 24184369 (-)
LOC110525317 dgcr6 coding downstream 132096 24072614 ~ 24079048 (-)
LOC110525572 LOC106585514 coding downstream 139439 24059911 ~ 24071705 (-)
LOC110525567 LOC106585510 coding downstream 169224 24032069 ~ 24041920 (-)
LOC110525568 LOC106585513 coding downstream 179145 24024546 ~ 24031999 (-)
ncor2 LOC106585520 coding upstream 93652 24317912 ~ 24504123 (-)
LOC118965019 LOC106585477 coding upstream 333227 24557487 ~ 24566324 (-)
LOC118965071 LOC106585477 coding upstream 354445 24578705 ~ 24579373 (-)
ep400 LOC106579917 coding upstream 373710 24597970 ~ 24634358 (-)
LOC110525585 LOC106585524 coding upstream 431528 24655788 ~ 24715090 (-)
G487754 NA non-coding downstream 1863 24207065 ~ 24209281 (-)
G487807 NA non-coding downstream 5912 24204881 ~ 24205232 (-)
G487805 NA non-coding downstream 8893 24201922 ~ 24202251 (-)
G487801 NA non-coding downstream 12447 24198066 ~ 24198697 (-)
G487798 NA non-coding downstream 16069 24194762 ~ 24195075 (-)
G487820 NA non-coding upstream 10542 24234802 ~ 24235048 (-)
G487821 NA non-coding upstream 10943 24235203 ~ 24235484 (-)
G487826 NA non-coding upstream 17594 24241854 ~ 24242060 (-)
G488329 LOC106585519 non-coding upstream 88031 24312291 ~ 24314486 (-)
LOC110525552 LOC106585495 other downstream 493361 23713875 ~ 23717830 (-)
LOC110525180 hps4 other downstream 625590 23582127 ~ 23587892 (-)
G487016 NA other downstream 819082 23390017 ~ 23392062 (-)
G487022 bicdl1 other downstream 825237 23385534 ~ 23385907 (-)
G486953 NA other downstream 957783 23251286 ~ 23258106 (-)
G488386 NA other upstream 129273 24353533 ~ 24353823 (-)
G489038 NA other upstream 881945 25106205 ~ 25106570 (-)
G489511 hmcn2 other upstream 1272703 25496963 ~ 25497489 (-)
LOC110525606 LOC106585545 other upstream 2055447 26271759 ~ 26283169 (-)

Expression


Co-expression Network