Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525595 |
| gene name | crat |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 25439781 ~ 25449371 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| crat | Enables acyl-CoA oxidase activity and carnitine O-acetyltransferase activity. Involved in carnitine metabolic process, CoA-linked and fatty acid metabolic process. Located in mitochondrion and peroxisome. Implicated in neurodegeneration with brain iron accumulation. |
| description |
|---|
| carnitine O-acetyltransferase-like isoform X1 |
| id | description |
|---|---|
| K00624 | E2.3.1.7; carnitine O-acetyltransferase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605844.2 | True | 3146 | mRNA | 0.47 | 14 | 25439781 | 25449371 |
25,432,000
25,434,000
25,436,000
25,438,000
25,440,000
25,442,000
25,444,000
25,446,000
25,448,000
25,450,000
25,452,000
25,454,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525596 | LOC106585340 | coding | upstream | 693 | 25437496 ~ 25439088 (+) |
| LOC110525594 | NA | coding | upstream | 5094 | 25426294 ~ 25434687 (+) |
| asb6 | asb6 | coding | upstream | 31549 | 25404469 ~ 25408232 (+) |
| LOC110525592 | LOC106585533 | coding | upstream | 39851 | 25391698 ~ 25399930 (+) |
| LOC110525590 | LOC106585531 | coding | upstream | 277651 | 25115383 ~ 25162130 (+) |
| LOC110525598 | ncs1 | coding | downstream | 11975 | 25461346 ~ 25492564 (+) |
| hmcn2 | hmcn2 | coding | downstream | 47473 | 25496844 ~ 25557967 (+) |
| LOC110525599 | LOC106585538 | coding | downstream | 147278 | 25596649 ~ 25624515 (+) |
| LOC118965109 | NA | coding | downstream | 159580 | 25608951 ~ 25609004 (+) |
| si:dkey-191c17.2 | LOC106585342 | coding | downstream | 189445 | 25638816 ~ 25641178 (+) |
| G489267 | NA | non-coding | upstream | 4566 | 25434932 ~ 25435215 (+) |
| G489258 | NA | non-coding | upstream | 26564 | 25412972 ~ 25413217 (+) |
| G489247 | NA | non-coding | upstream | 30181 | 25409100 ~ 25409600 (+) |
| G489239 | NA | non-coding | upstream | 50199 | 25389370 ~ 25389582 (+) |
| G489255 | NA | non-coding | downstream | 5675 | 25455046 ~ 25459348 (+) |
| G489428 | NA | non-coding | downstream | 207072 | 25656443 ~ 25656666 (+) |
| G489430 | NA | non-coding | downstream | 210566 | 25659937 ~ 25660221 (+) |
| G489431 | NA | non-coding | downstream | 211106 | 25660477 ~ 25660949 (+) |
| G489737 | NA | non-coding | downstream | 348971 | 25798342 ~ 25798568 (+) |
| G488258 | NA | other | upstream | 500509 | 24938769 ~ 24939272 (+) |
| G488078 | NA | other | upstream | 808385 | 24630969 ~ 24631396 (+) |
| G488049 | NA | other | upstream | 853468 | 24579961 ~ 24586313 (+) |
| LOC110525563 | LOC106585507 | other | upstream | 1525531 | 23911741 ~ 23914297 (+) |
| G487146 | LOC106585492 | other | upstream | 1771854 | 23653120 ~ 23667927 (+) |
| G489447 | NA | other | downstream | 234315 | 25683686 ~ 25684311 (+) |
| LOC110525642 | bin3 | other | downstream | 2039225 | 27488557 ~ 27543022 (+) |
| LOC110525650 | LOC106585598 | other | downstream | 2330259 | 27738953 ~ 27793944 (+) |
| LOC110525669 | NA | other | downstream | 2922351 | 28370701 ~ 28373267 (+) |
