lmx1bb (LOC106585540)


Basic Information

Item Value
gene id lmx1bb
gene name LOC106585540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 25704174 ~ 25768796 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605860.2
ACAATACCACAAAGCATGTGAACGTCGAAAGCGTAATGGTCCAATACTTAATTTCAAAGCTTTTACTAACCTATATGAagacaagaagaagaaaaaagaagaaaaagaagaaacatcaacaacaacaacaaaaaacaatacaaacaccAACTATAGGCCTACTAGGATACTTATACTACTACTCTAATAATTACAATAATTtatgtattattataattattataatatcaATTGTAATAAAGAAGTATTATCTTAGCAATGGTTCACTTTGAACTAAATTAAGATAAATTGCAAATGGCCATAGCAAGTTAAACTTCTTGATATACCTTTAGATTACAATGTACAGTATTTGAGTTGTTGTACACTGACTGCATTTTTGTTTCTCTCACCATGTTGTGTCTATAGCTTTGTTCAAAGTGATAGGCGAAACATAGTTCAACTTTTAGAGCGCACCAAATGTGAGCACCAATAGCATCTCAATGTCAGTAAATAGTCTAAAAAAGTGACGCTGCCCcagaggggtgggaggaggatCCATTCGCTTCAATCTCGTAATGCAGACTTTTCAAGCGGCAGGGATCCGTCCAAGGGGCATAGCATTTTAAGAGTTACCATTGGAACATTTCACTCATATTTTCTGGAGTTacaattgttgttgttttagtaGTTTTTCTTGGTAGAAACATACGTCTCGAGCGGATAAGCTTCATCCTCCATAGAATTCTCTTCTGGTCACGCGCGGGTGCAAACAAGAAGATAGCCTACAGTATACATATTCAGTCCAAATTAACAGGTCCGGAGTCACTGGAACGCTGTTTCTTGAAGAGAAACCAATCCAAGTACCCAAGGATGTTAGACGGTATAAAGACTGAAGATCATCCCCATCGTCAAGCTACCCTTGGAGTCGTGCTTGGGACGGAATGCCATCACCAATCTGTATGTGAAGGATGCCAGCGTCCAATATCTGACAGGTTTCTGATGAGAGTCAACGATTCCTCGTGGCATGAGGAGTGTCTGCAGTGCGCTGTGTGTCAACAACCTCTAACTACCAGTTGTTATTTCCGAGATAGGAAACTGTACTGCAAACATGACTACCAACAATTGTTTGCCACCAAGTGCAGTGGATGCCTGGAGAAGATCGCCCCCACAGAGTTTGTGATGCGTGCTCTGGAGTGTGTGTACCACTTAAACTGCttctcctgctgtgtgtgtgaccGGCAGCTGAGGAAAGGGGATGAGTTTGTCCTGAAGGAGGGCCAGCTGCTGTGTAAGAGTGACTATGAGAAGGAAAAGGACCTGCTCAGTTCTGTCAGCCCAGACGATTCTGACTCAGAGAAAAGTGACGATGACGATGTGGATATCAAGCAGGAGAAAGGCACGGGAGGCCAGGGGAAGGGAGATGATGGGAAAGACCCCAGGAGGCCCAAGCGGCCACGGACCATTCTGACCACTCAGCAGAGACGAGCTTTCAAAGCCTCCTTCGAGGTGTCCTCCAAACCCTGCAGAAAGGTGAGGGAGACTCTGGCTGCTGAGACAGGTCTCAGTGTTCGTGTGGTACAGGTGTGGTTTCAAAACCAGAGAGCCAAGATGAAGAAGCTGGCAAGaagacagcagcagcaacaggaaCAACAGAATTCTCAACGGCTTGGCCAAGAGGTGATGTCCAATCGGATGGAGGGCATGATGAACTCCTTCACGCCACTGGCCCCGCCCCAGCAGCAGCTGGTTGCCATGGATCAGAACGGCTACAGTACGGACCCCTTCCAGCAGGGCCTCACCCCCCCACAGATGCCCGGAGACCACATGAACCCATATGGTAATGACTCAATTTTCCACGATATAGACAGCGACACATCTTTAACCAGCCTCAGTGACTGCTTCATGGCATCTTCGGAAATGAATATGCAAGCACGTGTGGGACCCATTGACCGACTCTATTCCATGCAGAACTCTTACTTTGCATCATGAAAGAGCCACATACAGAAATGATGTTATGTAATATAGCAGATCATCCACAAAATCTGCTTCTCAACTTCCTCAACTGCCTCACATCAAGGAGTTTCCACACTGCTATGGACAAGACATAAGCAACAACCTCTTCCAGTGACTCCTGGATCATTTGCAGACAAcggactcaaagagagagaaactagtTTCTCAACCGTGAAGATTCCCTGGGATGATTCTATTTTCTCCTCCTTTCTAGAGATTATTTGTAGCATATTTGTATAGTACTGTCACAGAAGTAGCACATCTTTCTTTGTCCACCTAAAGAAATTTCATTGAGCCACTGATTTAAGAAAAACTCTTACCAAATACTACAAGCCTACCAGTTCTCATAATGCATGACTCCATAGTTAATCGTATGACCATAAAAGTGAAAAACCCTTAAAAAAAATCATGTGAATTGTTGAGATGTCAGAATGTGGTTTTGAACTCCATGTCCTCGTTATAATGCGTTCAGCCTGATCACATGGATAGTTTTAGCCCTAAAGAGACGATATGGTGTTCATAGTAAATAGACAGTGTGTTCACAAGAGAGGATGTGAGTGTGTATTTGTCCGGGCGTCGACATATACACctttgtgtagtgtagtgtctgtttaGTGTAAATACATTCCCAAACAGATTGGTTGTGCATGTACAAATGGAAAGCGTTCTATTTATTTAACTACAACATGCTCTTGAAGGTACTTATGAATCTGAAAAGCTTTATTTAAAAGGATAATATTTTGTTATGTAACTAATgagtaccagtggaggctgctgaggggaggaagggtCATactaatgactggaatggagtcaatggaatggtatcaaaaatATAGGGTATCAAtgggtttgataccattccattcactcccttccagccattacaatccattccagccattattagcagcctccactggtgagTACATGATTATTAAAATTAATTTGTATGCCATTTAATTATGAACCAACCATAACCCTTTTTTTCAGCCAAGCTGTAAATGAGCAAAATTGTGCTATTTATTTTGTACAGATTTGAGACCATGTCAAATGTACATTTTTAATGTTAAGAAATTGCTAAATTACCAAAGTCAATTGGTTCATTGAATAAACAATATTTCCATCTCCTGATAATAGCTTAATTCATGCTACACTAAAACATTGTTGTACTCAAAAGACTAAACCTCATAATAGCAAATTCAAAATTGTATTGCGTATTTTCATTGTATAGTAATAGTTAAAGCGACTGAACTCaaggtttattttttatttttattaaactcTGTGAATGGATGAAATTTGCAA
>XM_021605859.2
CACAATACCACAAAGCATGTGAACGTCGAAAGCGTAATGGTCCAATACTTAATTTCAAAGCTTTTACTAACCTATATGAagacaagaagaagaaaaaagaagaaaaagaagaaacatcaacaacaacaacaaaaaacaatacaaacaccAACTATAGGCCTACTAGGATACTTATACTACTACTCTAATAATTACAATAATTtatgtattattataattattataatatcaATTGTAATAAAGAAGTATTATCTTAGCAATGGTTCACTTTGAACTAAATTAAGATAAATTGCAAATGGCCATAGCAAGTTAAACTTCTTGATATACCTTTAGATTACAATGTACAGTATTTGAGTTGTTGTACACTGACTGCATTTTTGTTTCTCTCACCATGTTGTGTCTATAGCTTTGTTCAAAGTGATAGGCGAAACATAGTTCAACTTTTAGAGCGCACCAAATGTGAGCACCAATAGCATCTCAATGTCAGTAAATAGTCTAAAAAAGTGACGCTGCCCcagaggggtgggaggaggatCCATTCGCTTCAATCTCGTAATGCAGACTTTTCAAGCGGCAGGGATCCGTCCAAGGGGCATAGCATTTTAAGAGTTACCATTGGAACATTTCACTCATATTTTCTGGAGTTacaattgttgttgttttagtaGTTTTTCTTGGTAGAAACATACGTCTCGAGCGGATAAGCTTCATCCTCCATAGAATTCTCTTCTGGTCACGCGCGGGTGCAAACAAGAAGATAGCCTACAGTATACATATTCAGTCCAAATTAACAGGTGACTGCTCCAAATAGTGTTTGTCAGGTTTATTGTCGCTTCTCATCCGATTCTGTGACATACGACGATTCTGCTTAGGATAGTTCTACAAACAGTGACGTCTGTCTTAACATTGGGAcgacttttttttttattattatttttttaagttaGCGATCTGGGAAAACGcattgtttgtgtatgtgtgtgcaagtAGCCTCAGCAAATATTGTGGCATTTAGCTAGTATTTGAAGCGAAGAAAAGTCTGACAGTACATTGTTATGGATATTGCAACAGGTCCGGAGTCACTGGAACGCTGTTTCTTGAAGAGAAACCAATCCAAGTACCCAAGGATGTTAGACGGTATAAAGACTGAAGATCATCCCCATCGTCAAGCTACCCTTGGAGTCGTGCTTGGGACGGAATGCCATCACCAATCTGTATGTGAAGGATGCCAGCGTCCAATATCTGACAGGTTTCTGATGAGAGTCAACGATTCCTCGTGGCATGAGGAGTGTCTGCAGTGCGCTGTGTGTCAACAACCTCTAACTACCAGTTGTTATTTCCGAGATAGGAAACTGTACTGCAAACATGACTACCAACAATTGTTTGCCACCAAGTGCAGTGGATGCCTGGAGAAGATCGCCCCCACAGAGTTTGTGATGCGTGCTCTGGAGTGTGTGTACCACTTAAACTGCttctcctgctgtgtgtgtgaccGGCAGCTGAGGAAAGGGGATGAGTTTGTCCTGAAGGAGGGCCAGCTGCTGTGTAAGAGTGACTATGAGAAGGAAAAGGACCTGCTCAGTTCTGTCAGCCCAGACGATTCTGACTCAGAGAAAAGTGACGATGACGATGTGGATATCAAGCAGGAGAAAGGCACGGGAGGCCAGGGGAAGGGAGATGATGGGAAAGACCCCAGGAGGCCCAAGCGGCCACGGACCATTCTGACCACTCAGCAGAGACGAGCTTTCAAAGCCTCCTTCGAGGTGTCCTCCAAACCCTGCAGAAAGGTGAGGGAGACTCTGGCTGCTGAGACAGGTCTCAGTGTTCGTGTGGTACAGGTGTGGTTTCAAAACCAGAGAGCCAAGATGAAGAAGCTGGCAAGaagacagcagcagcaacaggaaCAACAGAATTCTCAACGGCTTGGCCAAGAGGTGATGTCCAATCGGATGGAGGGCATGATGAACTCCTTCACGCCACTGGCCCCGCCCCAGCAGCAGCTGGTTGCCATGGATCAGAACGGCTACAGTACGGACCCCTTCCAGCAGGGCCTCACCCCCCCACAGATGCCCGGAGACCACATGAACCCATATGGTAATGACTCAATTTTCCACGATATAGACAGCGACACATCTTTAACCAGCCTCAGTGACTGCTTCATGGCATCTTCGGAAATGAATATGCAAGCACGTGTGGGACCCATTGACCGACTCTATTCCATGCAGAACTCTTACTTTGCATCATGAAAGAGCCACATACAGAAATGATGTTATGTAATATAGCAGATCATCCACAAAATCTGCTTCTCAACTTCCTCAACTGCCTCACATCAAGGAGTTTCCACACTGCTATGGACAAGACATAAGCAACAACCTCTTCCAGTGACTCCTGGATCATTTGCAGACAAcggactcaaagagagagaaactagtTTCTCAACCGTGAAGATTCCCTGGGATGATTCTATTTTCTCCTCCTTTCTAGAGATTATTTGTAGCATATTTGTATAGTACTGTCACAGAAGTAGCACATCTTTCTTTGTCCACCTAAAGAAATTTCATTGAGCCACTGATTTAAGAAAAACTCTTACCAAATACTACAAGCCTACCAGTTCTCATAATGCATGACTCCATAGTTAATCGTATGACCATAAAAGTGAAAAACCCTTAAAAAAAATCATGTGAATTGTTGAGATGTCAGAATGTGGTTTTGAACTCCATGTCCTCGTTATAATGCGTTCAGCCTGATCACATGGATAGTTTTAGCCCTAAAGAGACGATATGGTGTTCATAGTAAATAGACAGTGTGTTCACAAGAGAGGATGTGAGTGTGTATTTGTCCGGGCGTCGACATATACACctttgtgtagtgtagtgtctgtttaGTGTAAATACATTCCCAAACAGATTGGTTGTGCATGTACAAATGGAAAGCGTTCTATTTATTTAACTACAACATGCTCTTGAAGGTACTTATGAATCTGAAAAGCTTTATTTAAAAGGATAATATTTTGTTATGTAACTAATgagtaccagtggaggctgctgaggggaggaagggtCATactaatgactggaatggagtcaatggaatggtatcaaaaatATAGGGTATCAAtgggtttgataccattccattcactcccttccagccattacaatccattccagccattattagcagcctccactggtgagTACATGATTATTAAAATTAATTTGTATGCCATTTAATTATGAACCAACCATAACCCTTTTTTTCAGCCAAGCTGTAAATGAGCAAAATTGTGCTATTTATTTTGTACAGATTTGAGACCATGTCAAATGTACATTTTTAATGTTAAGAAATTGCTAAATTACCAAAGTCAATTGGTTCATTGAATAAACAATATTTCCATCTCCTGATAATAGCTTAATTCATGCTACACTAAAACATTGTTGTACTCAAAAGACTAAACCTCATAATAGCAAATTCAAAATTGTATTGCGTATTTTCATTGTATAGTAATAGTTAAAGCGACTGAACTCaaggtttattttttatttttattaaactcTGTGAATGGATGAAATTTGCAA
>XM_036979725.1
TGGACACAATACCACAAAGCATGTGAACGTCGAAAGCGTAATGGTCCAATACTTAATTTCAAAGCTTTTACTAACCTATATGAagacaagaagaagaaaaaagaagaaaaagaagaaacatcaacaacaacaacaaaaaacaatacaaacaccAACTATAGGCCTACTAGGATACTTATACTACTACTCTAATAATTACAATAATTtatgtattattataattattataatatcaATTGTAATAAAGAAGTATTATCTTAGCAATGGTTCACTTTGAACTAAATTAAGATAAATTGCAAATGGCCATAGCAAGTTAAACTTCTTGATATACCTTTAGATTACAATGTACAGTATTTGAGTTGTTGTACACTGACTGCATTTTTGTTTCTCTCACCATGTTGTGTCTATAGCTTTGTTCAAAGTGATAGGCGAAACATAGTTCAACTTTTAGAGCGCACCAAATGTGAGCACCAATAGCATCTCAATGTCAGTAAATAGTCTAAAAAAGTGACGCTGCCCcagaggggtgggaggaggatCCATTCGCTTCAATCTCGTAATGCAGACTTTTCAAGCGGCAGGGATCCGTCCAAGGGGCATAGCATTTTAAGAGTTACCATTGGAACATTTCACTCATATTTTCTGGAGTTacaattgttgttgttttagtaGTTTTTCTTGGTAGAAACATACGTCTCGAGCGGATAAGCTTCATCCTCCATAGAATTCTCTTCTGGTCACGCGCGGGTGCAAACAAGAAGATAGCCTACAGTATACATATTCAGTCCAAATTAACAGGTGACTGCTCCAAATAGTGTTTGTCAGGTTTATTGTCGCTTCTCATCCGATTCTGTGACATACGACGATTCTGCTTAGGATAGTTCTACAAACAGTGACGTCTGTCTTAACATTGGGAcgacttttttttttattattatttttttaagttaGCGATCTGGGAAAACGcattgtttgtgtatgtgtgtgcaagtAGCCTCAGCAAATATTGTGGCATTTAGCTAGTATTTGAAGCGAAGAAAAGTCTGACAGTACATTGTTATGGATATTGCAACAGGTCCGGAGTCACTGGAACGCTGTTTCTTGAAGAGAAACCAATCCAAGTACCCAAGGATGTTAGACGGTATAAAGACTGAAGATCATCCCCATCGTCAAGCTACCCTTGGAGTCGTGCTTGGGACGGAATGCCATCACCAATCTGTATGTGAAGGATGCCAGCGTCCAATATCTGACAGGTTTCTGATGAGAGTCAACGATTCCTCGTGGCATGAGGAGTGTCTGCAGTGCGCTGTGTGTCAACAACCTCTAACTACCAGTTGTTATTTCCGAGATAGGAAACTGTACTGCAAACATGACTACCAACAATTGTTTGCCACCAAGTGCAGTGGATGCCTGGAGAAGATCGCCCCCACAGAGTTTGTGATGCGTGCTCTGGAGTGTGTGTACCACTTAAACTGCttctcctgctgtgtgtgtgaccGGCAGCTGAGGAAAGGGGATGAGTTTGTCCTGAAGGAGGGCCAGCTGCTGTGTAAGAGTGACTATGAGAAGGAAAAGGACCTGCTCAGTTCTGTCAGCCCAGACGATTCTGACTCAGAGAAAAGTGACGATGACGATGTGGATATCAAGCAGGAGAAAGGCACGGGAGGCCAGGGGAAGGGAGATGATGGGAAAGACCCCAGGAGGCCCAAGCGGCCACGGACCATTCTGACCACTCAGCAGAGACGAGCTTTCAAAGCCTCCTTCGAGGTGTCCTCCAAACCCTGCAGAAAGGTGAGGGAGACTCTGGCTGCTGAGACAGGTCTCAGTGTTCGTGTGGTACAGGTGTGGTTTCAAAACCAGAGAGCCAAGATAATGATGTTATTTGTTACTAATCAAGAGAACAAAGTAACAACAGCAATGGTGCACATGGATTGGCTGGAAAGGGCAAAACATTACTTACTCTAAAACAGCTATCAAATCACCACAGCTATCAACGATAAATGTAACTTTTTCATTGCATTCCTTTCAACTCTGTAAAGTTAAAGTGCAATGCTTGCAAATCTACCTCAGTCTTCCATTAGATGTCTCCACCCACTGCCTTTTTTGATATTATCTTCAAAAGCCTTTGATAATGATGTACAGTCAGATATGTGTTCCTGTAGTTCACTCAGGGGTGAGCAACAAGGAGCATCATTTTCAAATTAAAAAGAGCACATGTTAGTTTGGGGAGTACATTAAA

Function

NR:

description
LIM/homeobox protein LMX-1.2 isoform X1

GO: NA

KEGG:

id description
K09371 LMX1; LIM homeobox transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605860.2 False 3300 mRNA 0.41 9 25704174 25768791
XM_021605859.2 False 3578 mRNA 0.41 8 25704174 25768792
XM_036979725.1 True 2239 mRNA 0.42 6 25709252 25768796

Neighbor

gene id symbol gene type direction distance location
LOC110525601 LOC106585539 coding downstream 43925 25643232 ~ 25660249 (-)
LOC110525597 NA coding downstream 252962 25449019 ~ 25451212 (-)
LOC110525591 LOC106579906 coding downstream 328692 25172861 ~ 25375482 (-)
LOC110525589 LOC106585529 coding downstream 786322 24911627 ~ 24917852 (-)
piwil1 piwil1 coding downstream 819169 24873223 ~ 24885005 (-)
pbx3b LOC106585542 coding upstream 210158 25978954 ~ 26067633 (-)
LOC110525604 LOC106585543 coding upstream 465756 26234552 ~ 26264035 (-)
LOC110525606 LOC106585545 coding upstream 502963 26271759 ~ 26283169 (-)
LOC110525607 LOC106585546 coding upstream 524892 26293688 ~ 26317316 (-)
LOC110525608 NA coding upstream 561283 26330079 ~ 26334833 (-)
G489646 NA non-coding downstream 19490 25684452 ~ 25684684 (-)
G489630 NA non-coding downstream 40362 25663141 ~ 25663812 (-)
G489622 NA non-coding downstream 60999 25641539 ~ 25643175 (-)
G489590 LOC106585538 non-coding downstream 96695 25596797 ~ 25607479 (-)
G489527 NA non-coding downstream 184261 25519709 ~ 25519913 (-)
G489706 NA non-coding upstream 2341 25771137 ~ 25771355 (-)
G489721 LOC106569888 non-coding upstream 16803 25785599 ~ 25785942 (-)
G489731 NA non-coding upstream 27028 25795824 ~ 25796123 (-)
G489752 NA non-coding upstream 40029 25808825 ~ 25809089 (-)
G489764 NA non-coding upstream 44996 25813792 ~ 25814205 (-)
G489511 hmcn2 other downstream 206685 25496963 ~ 25497489 (-)
G489038 NA other downstream 597604 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 994754 24655788 ~ 24715090 (-)
G488386 NA other downstream 1350351 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 1986391 23713875 ~ 23717830 (-)
tmem230b LOC106585554 other upstream 686936 26455731 ~ 26457883 (-)
LOC110525619 LOC106585557 other upstream 778426 26481087 ~ 26551627 (-)
G491291 NA other upstream 1056071 26824867 ~ 26867158 (-)
G491539 NA other upstream 1447811 27216607 ~ 27244193 (-)

Expression


Co-expression Network