LOC110525606 (LOC106585545)


Basic Information

Item Value
gene id LOC110525606
gene name LOC106585545
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26271759 ~ 26283169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605884.2
ATAAACCATGAGGGCGCACTAAATCACTGTTGACTGTGTTGTGGACAACATGTAGCACTAAATGCGAAGATGGCATGATTGTTATAAAGACTGTATAAGACATGTAGTAAAACTGCACCTAACAGGAGCTAAGGATTGATCATGTAGCCTACATATGATGGAAGCGGATCATTGGCGTGAAGGGCCATATTGATCTTGAATCAATCTGAATGGGGAGATCGGAGGAGTCCCTATAAGATGACACGCACAGATCCCCCTGATATACTGGTATCTACTCTGTGTCGGGACATCAAACTAAATCCCATCACTGGGCACTCCATTTCGCTCAGCCCCTTCCAACAATGTGACTCGCAAATGATTGACAAACTGGAGCGACACACGGAAACCATTAACAAAAGACACTGCCGTAGCTTTGACTACCTTGAGTCATTGGACGACCCACAGCCCGTTTCTGCCTCAATGGAGTATCCTTACAAGAGGACTGAGCATCAGAGGATGCATAAAGAGGTGACCTGGAATGGCCTGGATCATCCAGGACACCTCCGTTTCTCGTCCCCTGATCTGTTCAACATTAGACTACCCCCACCACAGCATGCCAACCCAGACAAAACCACCACGAGGTCAGATTCAAAGAAAAGGACAAGATCAAAAAGTGCTCCCAGAGTCAAGACCACCCTTACCCCTGTGCCCATGTCAGTCTCTTCACCGGTAACCAGGAGAGGACGAGGTGTCCCACAGGCTGTACCAGACGCCCCTCTAAGGACATCTGAACCACACCGGGACTCTTACTCCTCTAACCAGGCTTTTTCGAACGAGGTACACCCTATAAAACTGCAACCACACTCTCCCCTCTACGTCTCAGACTGTTTCTCTGAGGAGAGTAAACAGGATGAGCCAGCCATCACTCCTCATGTCAGGTGTCGTGTGGATATCAAGCCAGATGCAGCGGTCCTGCAGCACACATCCAGGAGGTCTCAGAGCATGAGGACTGAACATCCCTGGCAGAGATACTCCTACTTCAGTCAAAGCAGAGGTCTGTCTGTGCCACGGCAGGTACGGACACCCACACCAAACGACTGTTACAGTGGCGATTATCGACAAACATATCAGTACACTACCTGCGGGCCCCCCAGCTACATCCAGCCAGTAGACATGCGAAGGGTGCCCTCCACTATAATGCCAAGGGAATACTTGTCAAGGGAGCAGAGGACTCTTTCAAACCCCAATATACCCACTAAATTCTTCTACACTGAGGATCCGACCAGATACCCTGTCCACCCCTCTGCTAGAGCGTACTATCAGGATGATAATTCCAGCCTCACCAGCCAAGACAGTACTCTTAATGGTCAGTATGTGCATGATCCACGGACTCGCTGGGTTCACACTCTCCCAGTCCGGCCATATTACACAGAGCAACACATGTCCAGCAGAGACCCTGTGCAGGCTGTCTATACCAGACCTTACTCCACAAGCGAGGCAGGGCCATACTTTGCTCAAACACAACAGGCAAGAGCATACTATGGGGAAGAACCCAGGGGCTATCCCTGTCAGTCTAATGGCTCCAGGATGTTATACAGCAAGCCGTACAACCCTCCAGCAGAACAGTATATTCCTTACAGGGCATATCACACGGAGGGCCGTCGACGTACACAAATGTCCCAGGCCTATGCAGATGACTGGTATTGTTCAAGTATATCTGGATACTCTAACCAGTCCACTCAGCTGACACCACAGAGAGTAAGACAAGAGCCAGTAATGTCCCCCTGGTTTGAAAACAGTTATGTGGAGCCAAACAGACTGGGAGCAGAAGTCAGAAAACACTCAAAGTCCTGGGACAATATTCTTTATCCTCGTCATGACAGGGAGCAAGCAGTGCCGTGTGGACGCAGCTATGATAATCTGTTATACCAGGGGAGACATGCTCTGTTTCCTAATGATACACCAAAGCCAGTTATACTCAATCTATCTAGTTCACCAAGGCGCTATGCTGCCCTGTCCCTCTCTGAAAACTCCTTAGAGAAAGGTCCAAACAATCCTGGAAGGAACACTAAGGCTGGGCTATGGTTTGTAACTCCTGAGATCACGATAACCGACAATGACATACGCGCACGCAACCACAAACTGCAAGATGTGCGTTCAGCCACCTGGGATGCACTGGATTGTGAAAAGGTGCCAACTCTAAATGTTCTTCGTCATCAAGAGCAGCCATCTGAGTCAGCGGAGCTGACCaaagacagacaacacaaagattatTCCCTGCAGCAGAGCCTAGAGCAACTGGACGAGCTGCTAGCTGATCTTGTCACTGACTACAAACCCTCGACCAGCAGGCGGCCTAGTCAGGATCTAATGGACCAACTAAAACAGTTGATTAGTGAGGATGATGAAAAAGGAAAGCTAATATCTTCAGGCCTAGAGAGTCTAGGAGGCCTAGAGAGTCTAGGAACTCTGAGCTCACCAATCGCCTCCACTAAAACCAGCCCTGACACAATCAAAGACCCAGACAGTGGGTGTGATGGCTTACAGAGCATACAAAGGAGTCCAGAGGAGATCTCCCCAGACCACAGCACAGACGACGATGACACCATGATGTGTGCCAACAAGAAGTGCAAGCGGACAGAGACCCTGTTCAATGCCTGTCTTTACTTCAAATCCTGTCATAGTTGCTACACCTTCTACTGCTCCCGGAACTGCCGTCGGGATGACTGGGACAGCCATAAAGAGAACTGTCTATATGGGCGTATCAGTAGTGTGTGCAGGCACATGCTGAAGTACTGCAGAGAGAAATCTGAGATCCATAAAGCCTTCTCTCGCATTGCCAAAGCTGGCTACCTTTCCAGAGGGAGAGGCATTCTTTTCCTGGGCTTTGCTAGCCCAGGGACTGCTGACAACTTCCTGAAGGTTGGGCTTGAGAGCCTTGTCATGTCCCCAACATATCTGTCTCTAAGAGAGCTGGACAGCTTCAAAGACAACCTGGGGGATTACTGTAAGGACCTGCAGCAGGCTGGCAATGAGTATGACCCCAATGAATGTTTTCTCTTGAATGTATCCATAGCTGTTGGTGAACTAGTGCCTAACAGACCTTCACCAAGAGTCCAAACACCAACAGTCCGAAAATATGCAAAGATTTCGTTGGCCTCCTCCAGCCCAGATAAAAAGGTCTTCAAGAAGGAAAGTGACATGGAGACACTCATTCTCACCCCGCCACCAGGCACACCTGATATTGacaaagagggaaaggagggTATGAAAGCCAGAGAGATCTGCTTTATCAATATCCAACGTGAGCTCAGGACCAGGGGAGTCTTCCTGCGTCATGAGTATCCCAAAATATACCGTCAACTCTGTGAATTTGTGGAGAGCAACAAGAGATTCACGCCCACTACCATTTACCCCATAGATAAGAGAACAGGGAAGCAGTTCATGTGTATGATCATGGCTGCTTCTGATCCCAGAACGCTAGACTGGGTGGGTACCCCCCATCTCCTGGATGATATTATATAGTACTGACCTGTGCACCTCTGATGTCACctatatgtacatgtatgtacatGTGATTTAACAGATATTTATGATGTATTTTACATCAGAAAGGAAGattgttaaagggatacttcaggattttagcagtgaagccctttatctatttCCCCATTATCACATGAACTCGTGGATACTATTTTATGTCTCTAACTAGCACAAttactaactagcgttagcgcaatgactggatgTCTATGGTAACTGccagcatgctagtagataccatagacttccactCTTcgtgctaacgttagttagcattggctcgcgaaactacctctaacttccttcaaactggatgcagagacatagaaatggtatccatgagttcatctgactctggggaagtagaaaaagggcttaattgccaaaatcctgaagtatccctttaataagACTACCAGTAGTAATGTTTGCATATGAATCACTAAGAATTAGATATCATTTAGAAGTGATTCATGCAAACAATGTGCAGGAAAGGTTGACTGAtgttgcacacacaaacaaactataaTGTAACACTTTATCATTGTCGTTTTTGGTTGAAGTAGCATTGTTTTGATCCTGTTACACTGAAATAGTTTGATCTGCATGTAAAATGGTCATACTGTATTTACAAGTCATTATTTAGTTTTAATCCCTGTTTAGACAAGGTACTGTCTGTGTTGATACCATATGAACTGGGTTGGAACAAGcacaaataataaaaaatataactGAATATAACTGAGGGAGGCACTACTATTAAGAGCATTTCTAAAGTAAACTAGATTAAAGCTTCAAAGCATAATCTCCACTAGTGTTCTACTTGTTGAAGCTTTTCTCAGCAGCtggaatatatttttaaaatactgACCGTTGTATTTCTGcagatgcttcaatatatccagaaATGATTCTAATTTGAATATCAAGAATCTCTTGAAATTGCTGTGTTGTGCCAGGGTCTGGGTAGAAATCTTAGTTAATACTCTTAATATCACTGCTGATAATAATACTTTCATTATGGCTACATATGGATAAAAAAAATCAGGTGTCTACATCTAGGCTCTGAATCCTCTCACCCCTTGAGTTTCCCAGTTGTTGATTTTGTTTCAGGCATTTGAATTGCACCCTCTTTCATCACTTTGTTTAGATTTTGTACTGATTCTACACTGCTAAATTCATTGTAACACGCTTGATAACTTGTTTGATAGTGGCCTTCAGTAGAAAATGCATTTGACAGAAAGCAATGTGTGGATTTGTTTTGTAAGGCTTGACTCTTGACTGTAAATTAATGTGGTGCATTTGCTTGACATTGcaaatgaacatttattttgcCTAAAGCACGTTATTTATATTCAGGTATTTTAATATTGATTATGCTCATGATAAGACTGACAATGGTTATAATAAACTGACATTCAATGCTTGGGAATTGAATATTATTTTCGAAGATATATGAAATATTAGTACTACTATTTTTGGTTGATGAAAAAATGTTTTAACTAACACATTTGTTGAAGAATATCTATTAATATCCTATTCCGCCCAATGTATTTCATACCTGTAAATGAACACACAAATGCAATAAAAAGAAGAAACAAAAGAGCAACTTAACATTTAAACAGGACATATTGGTAATGATAAGTTGGAGCTTTGAGCTGCTATGAGCTTCTTTTGCACTTGAACATACATTATACAGAATGTCTCCTAATGCATCTACACAGCACTGAAACAAGCATGTTATGTTTCCATTGATAGAGCCTGACAAATCTAAAGTTGCTATTTTTTCCTCCTGCAAGATGTCACCCAATTTTCTATTTGTGACGTTTATAACCCATGTATAATAAACCGAAAATAAAGATTGACCTTTC
>TU557298
GATAAACCATGAGGGCGCACTAAATCACTGTTGACTGTGTTGTGGACAACATGTAGCACTAAATGCGAAGATGGCATGATTGTTATAAAGACTGTATAAGACATGTAGTAAAACTGCACCTAACAGGAGCTAAGGATTGATCATGTAGCCTACATATGATGGAAGCGGATCATTGGCGTGAAGGAATGCTGAAGCCTTCATACGAAGCATCGGGGAGTGCTGCCGATGGAACAGGGGGTGTCTAAGCCAGCTCGTCGAGCTGTCGCCCTAGCTGGTGCGAGATGTTCTTGCCTCGGTTGGCTCGAAGCCATCCATCCCACATCgggcctcagccggatcgtcagATTTTTACGCCTAGCCAGCTCATCAGGCTGCTACGCCTCCGCCGGATCaccgggctcccacgcctcagcagGATCGACAGGCTTTCACGCCCCAGCCGGATCGTCGGGCTcctatgcctcagccggctcgccaggctcccatgcctctgcCGGTTCGTCGGGAGTTTACACCCAGCCGGCTTGTTCAGCGCCCGTGCCTCAGCCGGCACGTCAGACTCGCCCAGGTGGGACGCCAGGTGGCACCCctagagggggggtactgtcacacctgctcccgctccccctccctggTGCTCAAaggcgccaggctccccagcattatgcactcctgccaccatcgttACACACACCTGCCATCCCCCCGCCATGCGCTTCAgcaattattggact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605884.2 False 5399 mRNA 0.44 2 26271759 26283168
TU557298 True 734 TUCP 0.58 2 26279707 26283169

Neighbor

gene id symbol gene type direction distance location
LOC110525604 LOC106585543 coding downstream 7724 26234552 ~ 26264035 (-)
pbx3b LOC106585542 coding downstream 204126 25978954 ~ 26067633 (-)
lmx1bb LOC106585540 coding downstream 502963 25704174 ~ 25768796 (-)
LOC110525601 LOC106585539 coding downstream 611510 25643232 ~ 25660249 (-)
LOC110525597 NA coding downstream 820547 25449019 ~ 25451212 (-)
LOC110525607 LOC106585546 coding upstream 10520 26293688 ~ 26317316 (-)
LOC110525608 NA coding upstream 46911 26330079 ~ 26334833 (-)
LOC110525611 LOC106585549 coding upstream 99792 26382960 ~ 26391291 (-)
igsf9b LOC106585552 coding upstream 121018 26404186 ~ 26455420 (-)
tmem230b LOC106585554 coding upstream 172563 26455731 ~ 26457883 (-)
G490431 NA non-coding downstream 47419 26223969 ~ 26224340 (-)
G490145 NA non-coding downstream 190023 26081305 ~ 26081736 (-)
G489983 NA non-coding downstream 303127 25968402 ~ 25968632 (-)
G489964 NA non-coding downstream 315594 25955946 ~ 25956165 (-)
G489913 NA non-coding downstream 352395 25919106 ~ 25919364 (-)
G490506 NA non-coding upstream 72246 26355414 ~ 26355872 (-)
G490511 NA non-coding upstream 82037 26365205 ~ 26365445 (-)
G490513 LOC106585548 non-coding upstream 86089 26369257 ~ 26370378 (-)
G490517 NA non-coding upstream 106612 26389780 ~ 26390145 (-)
G490616 NA non-coding upstream 182834 26466002 ~ 26466279 (-)
G489511 hmcn2 other downstream 774270 25496963 ~ 25497489 (-)
G489038 NA other downstream 1165189 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1562339 24655788 ~ 24715090 (-)
G488386 NA other downstream 1917936 24353533 ~ 24353823 (-)
LOC110525552 LOC106585495 other downstream 2553976 23713875 ~ 23717830 (-)
LOC110525619 LOC106585557 other upstream 264054 26481087 ~ 26551627 (-)
G491291 NA other upstream 541699 26824867 ~ 26867158 (-)
G491539 NA other upstream 933439 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1451828 27734995 ~ 27737024 (-)

Expression


Co-expression Network