LOC110525608


Basic Information

Item Value
gene id LOC110525608
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26330079 ~ 26334833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473782.2
TTCCACAACAATTTTGGCGACAAGGAGGTGATCTGCAACTTCACCTGCTGACCGCTCCTGAAGACAAGTGGTAAATTGTGCACAGGGGATCTGAAATTGGGATCTCAGGGAAACCACACTCCGAAGGAGCAGCTGGACCCGCCTAAGCTTGGACAATCTATCAATAAGTGATGAAAGATAAGAaaaataaattgtttaaattTATAGATATAAAATTACAAAATTCCCTGTTGAGGATACGCTCAGAGCGAGGTCTTCCTAAAGAGGGCCACAGCTGAGGTAGCTAGCAGGACTGAGTTGGGTTGATAAGAGTGTTTTTAAGTGAGGTATCCTTCGACATGATTGTTAATTAGCCAGTTGCGCGCTACTAAAAGTCCAGATCCGTGGTACTGGGTTGATCACAGTAGGACTGGTGAGGTTAATGTATTGAAAGAGGAACTTGAGTGCAGGTGACTCCTTGTGAGGGCATCTGGCTTGGTGAAGTTCAAATAATAACGTGTAATGTTTTTATGAAATGTTTTGATAAACCAAGTTAACAGGTATGCCCCAGGTTactattgttagatattattgtgTTTGTTATTCCCGGCACTTCTCCGGAGCTGGAGGTTAGAATATAAGAGGTAAGATTGGATTTTTGAGGATCGTGTTACACAATTAGATAGAAGAAGCAGGTACTCTGTAGGTAGTTTTGTACATTTGGATAGACATAAGATAATCCATACCACAGTAATCGCAGTAGGCAATATCCCAGTGTGGAGACAACACCCCGTTTTGAGACCACTAATTAGGCAATCATTTTGATAATGGTATGGGTTACCCTGTTCATATAGACAGGGTTTGAAATCTAAAAACAGAGCTAACCGGTTTTTCCTCGTCTGTCTCATCCCCTGTGTGTCGGTGTTTGTGTTTtctgtgagtgtgtatgagtgaaGTAGCAgaaaccatgggaccacacaggaGCAAAGGACACGGAATTCCAGGGGATTTCGGACCAGTGCTGCCAGTGCCTGTGGCTGCGGTGGTCGTGTTGGGAAGAACAGGAGCACTATATCCCACCAAGACTGACTGGACGACCATCAGAGAATACACCATGACGAAGGATGAGAGCTTGGAAGGGTATAGATGGAGACTGGAAACCTGTTTCAGGCTGCACAGCGGCATCAGACCTAATGAATTGAAATATGGAGCTCTGTTGAAGGACTCCCTGGTAAGGGGCCTGACACCAGACCTGGAGAAAGTGGTGAGAACCACCTGTATCAGTTGGGAAACTGAACCCCTGGCCACTGTGGTACAACTTTGCAAACATGCTGAGCGACAGCAACGTGCTCAGAAggaagattttttttgtttttaaagtgaagcctcagaaattgcaagcTGCCCAGTTAACATTCTACCACTGGCAGGTGCCTGCTGGAGTTGGAGGTGGTGGAAGTGGAGGAAAATCCAAACTTGGAAGTTGCTTCCCTAGTGGCAAGGCAGGCCATTTCGCTGCACAATGCAATCAAGCCCAGCAGCCGAGGGGAAGAGCCAGGGGCGGATCGAGAGGCAGAGGAGCCCCAAGGAGGGCATGTACAATCCTGGACAAGAACAGGAGGAAGAATATTGACATGATgaagagacagggacagatgagGTAGAATCGTCAGAGCAACCCGAGCATTTGTTTAAAGAGTCACACCCTTACCAGAGTAGAGCCAACAGTGGAGGCTTGCGTCAATGGCAAAGACGGCCCATCTAACACCAGCTCAACTGCTCCATTATCAGAATGTTCTTCTGACAATGTCTCATGTGACCCTGAAGAGGTGCACTGAGTTAAATCTTGATACTTTGTTGCCTACCGAAGACGATGAAGAGCCGCACGGCTGTGTAGCTGAGAGGTCTACTTGGATCCACGCCAGCCACATCCGGAAGGTGCCTCACAGTTGCCATATGGGCAGTGACTCAAGGACAACCGGTCCTGGAAGAAGTACAAAATGGTATGGACTTGACTGATGACCGCTCAGTCCCATGGTGGGACTTATATAACAGCCACTCCAGCTCGACAGGAGTCCAGCAAACAATGGCCGCTCCAGTACTGGAAGAAGCACAAGGTCTATGCATCCACTGGATGAGCATCACAGTAGGAATCATGAGGGAAACACCTGGTGGTCGCTGCTTAACTATACAGTAAAGACTGAACTGATGGTAGAAAAATATTTTCTGTTATGTATGTAGTTTGTTTCCACACTCAGCGATCTCTCCATTCTCACAGTATTCAGTGGAGGTCAGCATTAATGACACTATGTGAACTGCTGTTTGTCAAATGAGATCACATGGGGTCAACCCTCACTAGATAAAACACTGAGA

Function

NR:

description
uncharacterized protein LOC110492400 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473782.2 True 2352 mRNA 0.46 3 26330079 26334833

Neighbor

gene id symbol gene type direction distance location
LOC110525607 LOC106585546 coding downstream 12763 26293688 ~ 26317316 (-)
LOC110525606 LOC106585545 coding downstream 46911 26271759 ~ 26283169 (-)
LOC110525604 LOC106585543 coding downstream 66044 26234552 ~ 26264035 (-)
pbx3b LOC106585542 coding downstream 262446 25978954 ~ 26067633 (-)
lmx1bb LOC106585540 coding downstream 561283 25704174 ~ 25768796 (-)
LOC110525611 LOC106585549 coding upstream 48127 26382960 ~ 26391291 (-)
igsf9b LOC106585552 coding upstream 69353 26404186 ~ 26455420 (-)
tmem230b LOC106585554 coding upstream 120898 26455731 ~ 26457883 (-)
dpysl2a LOC106585556 coding upstream 168111 26502944 ~ 26530832 (-)
LOC110525619 LOC106585557 coding upstream 200195 26481087 ~ 26551627 (-)
G490431 NA non-coding downstream 105739 26223969 ~ 26224340 (-)
G490145 NA non-coding downstream 248343 26081305 ~ 26081736 (-)
G489983 NA non-coding downstream 361447 25968402 ~ 25968632 (-)
G489964 NA non-coding downstream 373914 25955946 ~ 25956165 (-)
G489913 NA non-coding downstream 410715 25919106 ~ 25919364 (-)
G490506 NA non-coding upstream 20581 26355414 ~ 26355872 (-)
G490511 NA non-coding upstream 30372 26365205 ~ 26365445 (-)
G490513 LOC106585548 non-coding upstream 34424 26369257 ~ 26370378 (-)
G490517 NA non-coding upstream 54947 26389780 ~ 26390145 (-)
G490616 NA non-coding upstream 131169 26466002 ~ 26466279 (-)
G489511 hmcn2 other downstream 832590 25496963 ~ 25497489 (-)
G489038 NA other downstream 1223509 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1620659 24655788 ~ 24715090 (-)
G488386 NA other downstream 1976256 24353533 ~ 24353823 (-)
G491291 NA other upstream 490034 26824867 ~ 26867158 (-)
G491539 NA other upstream 881774 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1400163 27734995 ~ 27737024 (-)

Expression


Co-expression Network