LOC110525611 (LOC106585549)


Basic Information

Item Value
gene id LOC110525611
gene name LOC106585549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26382960 ~ 26391291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605889.2
AATGGACTTTAGATTGGCAGCACTTACCtacggagaggaagagaaacTAGCACATTGATGGAGTATTTTTGGTAAAACGTTAGTTGCGAAATTTATTTACAAATACCATATACAAACCTCGTATTTGAAGTGGATATTAGCTGTCTTCCTTGTTTATGTGTATGACGTTTGCATAGCTACGACTAGCTTGCTGTTTTGGTAGCAGCATTATCAGTTGCCAATAACAAGTCACTAGCTAGATAGCAGCTTGCTAGCAATGAACGACACTGTGGCCCTTCTGCAGAAATTCAATGCGCATCCAGATTCCCGCTGTTGGTATGTGGCATGGAACCCCAAAGGCACATTGCTGGCATCATGCGGTGGTGACCGAGCCATTCGGATATGGGGAAGGGAAGGTGACTCTTGGGAATGTAAGACCTTGCTCCAGGATGGACACCAGAGAACTGTCAGAAAGGTGGCATGGTCCCCATGTGGGAACTACCTGGCCTCAGCCAGCTTTGATGCCACAACCTGCATCTGGAAAAAGAAGAATGATGATTTTGAGTGCTTGACTGTGTTGGAAGGACATGAGAATGAGGTCAAATGTGTGGCCTGGGCCCCATCCGGTAACTTGCTGGCCACATGTAGTAGAGACAAGAGCGTCTGGATCTGGGAAGTGGATgaggagaatgagaatgagaatgagtatgagtgtgtgagtgtggtaAACTCTCATACACAGGATGTCAAGCATGTTGTCTGGCACCCAACACAGGAGCTCCTCGCCTCATGTAGCTACGACAACAATGTGTGTGTCTATAAAGAAGAGGATGATGACTGGGAGTGCAGGGCGACCCTGGAAGGACACACCTCCACTGTCTGGGGTTTGACCTTTGACCCAAGTGGCCAGCGGCTGGCCTCCTGCAGTGATGACTGTACTGTAAAGATCTGGAAAGAATGTCAGCCAGAAGGTGGGCAGGaagGCACTGACACGGCTTGGAAATGTGTTTGTACCCTTTCAGGGTTTCATGGACGGACAGTGTATGATATTGCATGGTGTCCACTGACGGGTGCCCTGGCGACTGCATGTGGTGATGACGGAGTACGTGTGTTTAAGGAGGATGAGACTGCTGACCCAGACCAGCCTGCTTTCTCCCTGTCTGCCCATGTACCCAAGGCCCACACCCAGGATGTCAACTGTATCGCCTGGAACCCCAAGGAGGCTGGGCTCCTTGTCTCCTGCAGTGACAATGGGGAGATAGCAGTCTGGAACTACCAGTCTGGGGTCTGagaacatgtacagtatgtggggCTAGTTAGGACTTCCAGATCCAGTGTTTAACAATGCTGAATTTACCTTGTACTGTCAAGGGTGCCAACAGCACTGAAATTGTCATGTATGATGTTTATTATTAATCCCTCTTGCAATAACCTGTTTTAATGAGGTTAGAGTGGTTTTGATTTCATTATACTGATACCTGCCTGTGCACTTGTGGTTCAAAACTGAATGTGGGCCCtaaatgtcataattatgtatttgattaacaatacaatatacacattccAATGGTGTTTTGTAATATCAAGAAAATAAAATTGTCATAGCTATGTAA
>XM_021605890.2
AATGGACTTTAGATTGGCAGCACTTACCtacggagaggaagagaaacTAGCACATTGATGGAGTATTTTTGGTAAAACGTTAGTTGCGAAATTTATTTACAAATACCATATACAAACCTCGTATTTGAAGTGGATATTAGCTGTCTTCCTTGTTTATGTGTATGACGTTTGCATAGCTACGACTAGCTTGCTGTTTTGGTAGCAGCATTATCAGTTGCCAATAACAAGTCACTAGCTAGATAGCAGCTTGCTAGCAATGAACGACACTGTGGCCCTTCTGCAGAAATTCAATGCGCATCCAGATTCCCGCTGTTGGTATGTGGCATGGAACCCCAAAGGCACATTGCTGGCATCATGCGGTGGTGACCGAGCCATTCGGATATGGGGAAGGGAAGGTGACTCTTGGGAATGTAAGACCTTGCTCCAGGATGGACACCAGAGAACTGTCAGAAAGGTGGCATGGTCCCCATGTGGGAACTACCTGGCCTCAGCCAGCTTTGATGCCACAACCTGCATCTGGAAAAAGAAGAATGATGATTTTGAGTGCTTGACTGTGTTGGAAGGACATGAGAATGAGGTCAAATGTGTGGCCTGGGCCCCATCCGGTAACTTGCTGGCCACATGTAGTAGAGACAAGAGCGTCTGGATCTGGGAAGTGGATgaggagaatgagaatgagaatgagtatgagtgtgtgagtgtggtaAACTCTCATACACAGGATGTCAAGCATGTTGTCTGGCACCCAACACAGGAGCTCCTCGCCTCATGTAGCTACGACAACAATGTGTGTGTCTATAAAGAAGAGGATGATGACTGGGAGTGCAGGGCGACCCTGGAAGGACACACCTCCACTGTCTGGGGTTTGACCTTTGACCCAAGTGGCCAGCGGCTGGCCTCCTGCAGTGATGACTGTACTGTAAAGATCTGGAAAGAATGTCAGCCAGAAGaagGCACTGACACGGCTTGGAAATGTGTTTGTACCCTTTCAGGGTTTCATGGACGGACAGTGTATGATATTGCATGGTGTCCACTGACGGGTGCCCTGGCGACTGCATGTGGTGATGACGGAGTACGTGTGTTTAAGGAGGATGAGACTGCTGACCCAGACCAGCCTGCTTTCTCCCTGTCTGCCCATGTACCCAAGGCCCACACCCAGGATGTCAACTGTATCGCCTGGAACCCCAAGGAGGCTGGGCTCCTTGTCTCCTGCAGTGACAATGGGGAGATAGCAGTCTGGAACTACCAGTCTGGGGTCTGagaacatgtacagtatgtggggCTAGTTAGGACTTCCAGATCCAGTGTTTAACAATGCTGAATTTACCTTGTACTGTCAAGGGTGCCAACAGCACTGAAATTGTCATGTATGATGTTTATTATTAATCCCTCTTGCAATAACCTGTTTTAATGAGGTTAGAGTGGTTTTGATTTCATTATACTGATACCTGCCTGTGCACTTGTGGTTCAAAACTGAATGTGGGCCCtaaatgtcataattatgtatttgattaacaatacaatatacacattccAATGGTGTTTTGTAATATCAAGAAAATAAAATTGTCATAGCTATGTAA
>XM_021605891.2
AATGGACTTTAGATTGGCAGCACTTACCtacggagaggaagagaaacTAGCACATTGATGGAGTATTTTTGGTAAAACGTTAGTTGCGAAATTTATTTACAAATACCATATACAAACCTCGTATTTGAAGTGGATATTAGCTGTCTTCCTTGTTTATGTGTATGACGTTTGCATAGCTACGACTAGCTTGCTGTTTTGGTAGCAGCATTATCAGTTGCCAATAACAAGTCACTAGCTAGATAGCAGCTTGCTAGCAATGAACGACACTGTGGCCCTTCTGCAGAAATTCAATGCGCATCCAGATTCCCGCTGTTGGTATGTGGCATGGAACCCCAAAGGCACATTGCTGGCATCATGCGGTGGTGACCGAGCCATTCGGATATGGGGAAGGGAAGGTGACTCTTGGGAATGTAAGACCTTGCTCCAGGATGGACACCAGAGAACTGTCAGAAAGGTGGCATGGTCCCCATGTGGGAACTACCTGGCCTCAGCCAGCTTTGATGCCACAACCTGCATCTGGAAAAAGAAGAATGATGATTTTGAGTGCTTGACTGTGTTGGAAGGACATGAGAATGAGGTCAAATGTGTGGCCTGGGCCCCATCCGGTAACTTGCTGGCCACATGTAGTAGAGACAAGAGCGTCTGGATCTGGGAAGTGGATgaggagaatgagaatgagaatgagtatgagtgtgtgagtgtggtaAACTCTCATACACAGGATGTCAAGCATGTTGTCTGGCACCCAACACAGGAGCTCCTCGCCTCATGTAGCTACGACAACAATGTGTGTGTCTATAAAGAAGAGGATGATGACTGGGAGTGCAGGGCGACCCTGGAAGGACACACCTCCACTGTCTGGGGTTTGACCTTTGACCCAAGTGGCCAGCGGCTGGCCTCCTGCAGTGATGACTGTACTGTAAAGATCTGGAAAGAATGTCAGCCAGAAGGTGGGCAGGGGTTTCATGGACGGACAGTGTATGATATTGCATGGTGTCCACTGACGGGTGCCCTGGCGACTGCATGTGGTGATGACGGAGTACGTGTGTTTAAGGAGGATGAGACTGCTGACCCAGACCAGCCTGCTTTCTCCCTGTCTGCCCATGTACCCAAGGCCCACACCCAGGATGTCAACTGTATCGCCTGGAACCCCAAGGAGGCTGGGCTCCTTGTCTCCTGCAGTGACAATGGGGAGATAGCAGTCTGGAACTACCAGTCTGGGGTCTGagaacatgtacagtatgtggggCTAGTTAGGACTTCCAGATCCAGTGTTTAACAATGCTGAATTTACCTTGTACTGTCAAGGGTGCCAACAGCACTGAAATTGTCATGTATGATGTTTATTATTAATCCCTCTTGCAATAACCTGTTTTAATGAGGTTAGAGTGGTTTTGATTTCATTATACTGATACCTGCCTGTGCACTTGTGGTTCAAAACTGAATGTGGGCCCtaaatgtcataattatgtatttgattaacaatacaatatacacattccAATGGTGTTTTGTAATATCAAGAAAATAAAATTGTCATAGCTATGTAA
>XM_021605892.2
AATGGACTTTAGATTGGCAGCACTTACCtacggagaggaagagaaacTAGCACATTGATGGAGTATTTTTGGTAAAACGTTAGTTGCGAAATTTATTTACAAATACCATATACAAACCTCGTATTTGAAGTGGATATTAGCTGTCTTCCTTGTTTATGTGTATGACGTTTGCATAGCTACGACTAGCTTGCTGTTTTGGTAGCAGCATTATCAGTTGCCAATAACAAGTCACTAGCTAGATAGCAGCTTGCTAGCAATGAACGACACTGTGGCCCTTCTGCAGAAATTCAATGCGCATCCAGATTCCCGCTGTTGGTATGTGGCATGGAACCCCAAAGGCACATTGCTGGCATCATGCGGTGGTGACCGAGCCATTCGGATATGGGGAAGGGAAGGTGACTCTTGGGAATGTAAGACCTTGCTCCAGGATGGACACCAGAGAACTGTCAGAAAGGTGGCATGGTCCCCATGTGGGAACTACCTGGCCTCAGCCAGCTTTGATGCCACAACCTGCATCTGGAAAAAGAAGAATGATGATTTTGAGTGCTTGACTGTGTTGGAAGGACATGAGAATGAGGTCAAATGTGTGGCCTGGGCCCCATCCGGTAACTTGCTGGCCACATGTAGTAGAGACAAGAGCGTCTGGATCTGGGAAGTGGATgaggagaatgagaatgagaatgagtatgagtgtgtgagtgtggtaAACTCTCATACACAGGATGTCAAGCATGTTGTCTGGCACCCAACACAGGAGCTCCTCGCCTCATGTAGCTACGACAACAATGTGTGTGTCTATAAAGAAGAGGATGATGACTGGGAGTGCAGGGCGACCCTGGAAGGACACACCTCCACTGTCTGGGGTTTGACCTTTGACCCAAGTGGCCAGCGGCTGGCCTCCTGCAGTGATGACTGTACTGTAAAGATCTGGAAAGAATGTCAGCCAGAAGGGTTTCATGGACGGACAGTGTATGATATTGCATGGTGTCCACTGACGGGTGCCCTGGCGACTGCATGTGGTGATGACGGAGTACGTGTGTTTAAGGAGGATGAGACTGCTGACCCAGACCAGCCTGCTTTCTCCCTGTCTGCCCATGTACCCAAGGCCCACACCCAGGATGTCAACTGTATCGCCTGGAACCCCAAGGAGGCTGGGCTCCTTGTCTCCTGCAGTGACAATGGGGAGATAGCAGTCTGGAACTACCAGTCTGGGGTCTGagaacatgtacagtatgtggggCTAGTTAGGACTTCCAGATCCAGTGTTTAACAATGCTGAATTTACCTTGTACTGTCAAGGGTGCCAACAGCACTGAAATTGTCATGTATGATGTTTATTATTAATCCCTCTTGCAATAACCTGTTTTAATGAGGTTAGAGTGGTTTTGATTTCATTATACTGATACCTGCCTGTGCACTTGTGGTTCAAAACTGAATGTGGGCCCtaaatgtcataattatgtatttgattaacaatacaatatacacattccAATGGTGTTTTGTAATATCAAGAAAATAAAATTGTCATAGCTATGTAA

Function

NR:

description
probable cytosolic iron-sulfur protein assembly protein ciao1-B isoform X4

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605889.2 False 1592 mRNA 0.47 7 26382960 26391291
XM_021605890.2 False 1583 mRNA 0.46 7 26382960 26391291
XM_021605891.2 False 1550 mRNA 0.47 7 26382960 26391291
XM_021605892.2 True 1541 mRNA 0.46 7 26382960 26391291

Neighbor

gene id symbol gene type direction distance location
LOC110525608 NA coding downstream 48127 26330079 ~ 26334833 (-)
LOC110525607 LOC106585546 coding downstream 65644 26293688 ~ 26317316 (-)
LOC110525606 LOC106585545 coding downstream 99792 26271759 ~ 26283169 (-)
LOC110525604 LOC106585543 coding downstream 118925 26234552 ~ 26264035 (-)
pbx3b LOC106585542 coding downstream 315327 25978954 ~ 26067633 (-)
igsf9b LOC106585552 coding upstream 12895 26404186 ~ 26455420 (-)
tmem230b LOC106585554 coding upstream 64440 26455731 ~ 26457883 (-)
dpysl2a LOC106585556 coding upstream 111653 26502944 ~ 26530832 (-)
LOC110525619 LOC106585557 coding upstream 143737 26481087 ~ 26551627 (-)
LOC110525620 LOC106585558 coding upstream 162247 26553538 ~ 26564330 (-)
G490513 LOC106585548 non-coding downstream 12582 26369257 ~ 26370378 (-)
G490511 NA non-coding downstream 17515 26365205 ~ 26365445 (-)
G490506 NA non-coding downstream 27088 26355414 ~ 26355872 (-)
G490431 NA non-coding downstream 158620 26223969 ~ 26224340 (-)
G490145 NA non-coding downstream 301224 26081305 ~ 26081736 (-)
G490616 NA non-coding upstream 74711 26466002 ~ 26466279 (-)
G490621 NA non-coding upstream 76230 26467521 ~ 26468331 (-)
G490886 NA non-coding upstream 152199 26543490 ~ 26544586 (-)
LOC110525621 LOC106585565 non-coding upstream 217557 26608848 ~ 26711398 (-)
G489511 hmcn2 other downstream 885471 25496963 ~ 25497489 (-)
G489038 NA other downstream 1276390 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1673540 24655788 ~ 24715090 (-)
G488386 NA other downstream 2029137 24353533 ~ 24353823 (-)
G491291 NA other upstream 433576 26824867 ~ 26867158 (-)
G491539 NA other upstream 825316 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1343705 27734995 ~ 27737024 (-)

Expression


Co-expression Network