LOC110525619 (LOC106585557)


Basic Information

Item Value
gene id LOC110525619
gene name LOC106585557
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26481087 ~ 26551627 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605902.2
GACGTCTCTTCTCAGGTGAGCCAATCATATATGATACGCCTGCGCGCGCTGTCGCTTGCGTGTCATGTTGACAAACGCTAAAGACGGAGCTGGCAACATGTCCGCCACTGCTGCTGCTCAGCAAAACAATAACGAGGAGCCTAGCCTAAACGGGTCATGGGTGGAGCTGGAGATGAATGGAAACAACAGGAACCAAGCCCTGCTGCCAAACTCCACCACACCCTCTCCTGCCCAGGGGAACGGGAATGAGGGGGAGAGTCAGGCCCTGGAGGTGGTgccagaggaggtggaggagagtcTGACAGCGGCACTGGAGCATGTGCCCTCATCCTCCTCTATCCACAATGGAGACATGGAGAAGATCCTGCTGGATGCCCAGCACGAGTCCAGCCAGAGCAGCTCCTCCTGCGACAGTCCTCACAGACCTCCCAGTCCAGATCAGGATGACGGCCAAATCACCTTTGATGTGGAGATGTCCAGTCGGAGAGGGAGCCAGTTAGAGGAGGAAGGTCCAGAGAAAAACAAAGAGGATATCATGATGAACAAAGTTGCAGATTGGTCCAGTCGGCCTGAAAACGTTCCACCCAAggaGTTCCACTTCCGTCACCCCAGACGCTCAGTATCCCTAAGCATGAGAAATAGTGGAGCCATGAAGAAAGGGGGTATCTTCTCTGCTGACTTCCTCAAAGTCTTCATCCCTTCCTTACTGCTATCTCACATTATTGCCCTTGGCATTGGGGTCTACATTGGGAAGAGACTCCCCACGCCTTCCACCAGCTCTTTCTAAACCCAAAGTGAAGCAGTATCTGGAAGTCGCATCAAAATTATCCTGTTGACTAGTTGTTACAATGTCTTCATGTGCTTAAATGTCCTCTTTTCCTCTGCATCCATTGTATGCCTAGCTATCTCCTTTcaactgtttttttccccccttttagTTATTTGTACCACTATCTGACAATGACTTACCCACGTTTTTTGATGTAGTGTGCTTTTGGAGGGTTCATAATTCATAAATGACTGGGAACTTTTTACCTTTTGACACAGATTGGCTTTGAACAGTAATGACCACTAGCAGCACATAATAGTTAACAGCACCTACCTGAATCTGAGTGTTGTACTTCTGGACAAAATTATTCCTCAAAAGCTGTTTATACTGTACTGCACAAACACTGTGACTGGTATTGGATGGCACAGGGCCTGGGGGTTTGGGAATTTCTCTTAGATTTCTACACAGATTACTTGGCTTAGACCTAGAGATTGTGCTTTGAGAAATCAAGAATTCCTCTACTGCTCCCTACTCCAAGTCAGTAAATTTCATGGTGACTTTTACCTGAACCAAAATAAGCTACATATCTGCAGTACGTCTTTCAATTGGCATTGAGAATTGCAGTAACTGTGAATCAAGTGGTATTGTTGTTCGGATTTGTTATTTTATTACATGGTTTGGAATAATATTCAGCCCAGACTTGTCAATTCAGGTTAAGTTTGCTTGTAATTCTAGCCTATTCTTGTTATACCTAATTTGTGTAATTTAGTAGCACCAAATAATTTTCTCTGAAGGTGGTCTCTTGGTGAAAGGGTGTGAATAGTGATGCTAGTAGCTACTACAGATTTCCATTGATTAACAGGAAAACATCCCAGTAGATGCTGAAAGAATAGTAAATCTAAATGCAGTACAGGGTAAAGTACGGGGTAAGGAAAAGTTTGAATGAAGACTTTATGTACAGTAGTTGATACCAATATACACAACCTGCCTGTTTAACGACACACATGCCACACATTCTTCCTTTTTGTTTTTCATATCTAATTTATTTTCTTCAAGCTGATTCTATAAACCTTTTGAATGTAAGTTTTCCCGTGTGGTAACACGCCCTCAGTGTATAGGTCCAGCCACCATACAGAGTAGGATGTATTGGTGGAATGATGTTATAACTGGCCACAAATAATTCAGTTTTGTTTCCTTTTGGTACACAAAATGACTACTGCATAGTGCCAAATATAGATTTATTTTAATCTCAGCGCTTTCATTACAAAGGTAACACGCACAGTGATTTCTCAACTCTTGGACAAGTTTAACTAACAAAAACTGTTTCATGCACTCATATCTCCATTCCTGATAAGTCCTGGTTCTGACATGTCCTCCGGTGAACATTTTGTGTATGCATGAAATATGTTTCCATTCTccataggcatacatttacataaAGCGGACCATATGTAAGTAATGATTTTTGACCTATTTGGTACTGAAATAATTTTATGAAATCTGATAAAGGaccctttttcttttttttgcaaTAGTAAAAAGCTTTTTTTCATACACTAAGTAATTATTCTCACATAGCGTGCAATAGGAACTCCTGAGAAAGTATCTTTACAGAACCAGCACTCCACCCCTGCTTGATTATTTAGGGTTTTGTTTTTTAACTTTGGGGGGGGGAGGGTGAGTGGACAATGGGGATAGATGTGGTGATTGTAGTAGGGTTCTTTTTTTTTGAGTGGGATTGTTTTTTGTGCCTCTGTTCTTGGTTTGTGCCAACTCAAAGTAACTCCCATTGTATGCATGCCTTTAGCTTGTAATTGGCATTGATTAACTTATTATCATTCATGAGATGCCAAAGGCTGTCATAGCTTTCATTTAATATTGTCAAGTCCATCCTGTATCTAACGCAGAAGAAGTATGTGCATTATCATtggtttcattttttttctttgaTAATCCAAAATACAAACTGAAAGATGCTTGGTCTTTTCCTTGAACATGTTTTGTTTGTGATATTGATTCTAGTAGCAAGAACTTTCAGTCTTGTTTGATAGTTTTTCCAATTTGATGAAAATCTGACATTAAAATGAGAAATTAACCGCAA
>TU557796
GGTGAGTGGACAATGGGGATAGATGTGGTGATTGTAGTAGGGTTCTTTTTTTTTGAGTGGGATTGTTTTTTGTGCCTCTGTTCTTGGTTTGTGCCAACTCAAAGTAACTCCCATTGTATGCATGCCTTTAGCTTGTAATTGGCATTGATTAACTTATTATCATTCATGAGATGCCAAAGGCTGTCATAGCTTTCATTTAATATTGTCAAGTCCATCCTGTATCTAACGCAGAAGAAGTATGTGCATTATCATtggtttcattttttttctttgaTAATCCAAAATACAAACTGAAAGATGCTTGGTCTTTTCCTTGAACATGTTTTGTTTGTGATATTGATTCTAGTAGCAAGAACTTTCAGTCTTGTTTGATAGTTTTTCCAATTTGATGAAAATCTGACATTAAAATGAGAAATTAACCGCAATTCACTCCAATGTGGTTTTTGAATGGTGAAAACGGATATAACAGAAATGCATTGTAAAACATTGTCATCAGAAGATGaaggagagtgatgga
>TU557799
ggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatacacacacacacacatagttgaagttggaagtttacatacaccgtagccaaatacatttaaactcagttattcacaattcctgacatttaatcctagtaaaaattccctgtcttaggtcagttaggatcaccattttattttaagaatttgaaatgtcagaataatagtatagagtgatttatttctgtctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttgggagcattgcctttcaattgtttaacttgggtcaatcgtttcgggtagccttccacaagcttcccacaataaatttgggtgaattttggcccattcctcctggcagagctggtttaactgagtcgggtttgttgtaggcctccttgctcgcacacactttttcagttctgtccacaaattttccataggattgaggtcagggctttgtgatggccactccaataccttgaatttgttgtccttactccgttttgccacaacttgggaAGTATgattggagtcattgtccatttggaagaccccatTTGTGacccaagttttaacttcctgactgatgtcttgatgttgcttcaatatagtccctcctgcagcaaaacacccacacatgatgctgccacccccgtgcttcacgtttgggatggtgttcttcagcttgcaaggctccccctttttcctccaaacataacaatggtcattatggccaagcagttctatttttgtttcatcagaccagaggacatttcaccaaaaagtacgatctttgtctccatgtgcagttgcaaaccgtatgtcgatataggattcgtGGATATAgttgcttttgtacctgtttcctccagcattttcacaaggtcctttgctgctgttctgggattgatttgcacttttcgcaccaaaatacgttaatctctaggagacagaacgcctctCTTTCCTGAGTGGtttgacagctgcgtggtcccatggtgtttgtacttgcgtactattgtttttgcAGCTggatgtggtaccttcaggtgttttggaaattgctcccaaggatcaaccagacttgtggaagtctacaattttttttttctctgaggtcttagctgattgcttttgattttcccataatgtcaagcaaagaggcactgagtttgaaggtaggcctagaaatacatccacaggtacacctccaattgactcaaattatgtcaattagcctatctgaagcttctaaagtcatgacaacattttctggaattttccAAGCTGTTTACATACATG

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605902.2 False 2870 mRNA 0.41 6 26535028 26549406
TU557796 False 517 lncRNA 0.35 2 26481087 26535452
TU557799 True 1343 TUCP 0.42 2 26547222 26551627

Neighbor

gene id symbol gene type direction distance location
dpysl2a LOC106585556 coding downstream 4196 26502944 ~ 26530832 (-)
tmem230b LOC106585554 coding downstream 77145 26455731 ~ 26457883 (-)
igsf9b LOC106585552 coding downstream 79608 26404186 ~ 26455420 (-)
LOC110525611 LOC106585549 coding downstream 143737 26382960 ~ 26391291 (-)
LOC110525608 NA coding downstream 200195 26330079 ~ 26334833 (-)
LOC110525620 LOC106585558 coding upstream 4132 26553538 ~ 26564330 (-)
LOC110525621 LOC106585565 coding upstream 92855 26608848 ~ 26711398 (-)
LOC110525622 NA coding upstream 164050 26713456 ~ 26724026 (-)
LOC110525623 cenpe coding upstream 176846 26726252 ~ 26732944 (-)
LOC110525624 LOC100380864 coding upstream 188873 26738279 ~ 26740643 (-)
G490621 NA non-coding downstream 66697 26467521 ~ 26468331 (-)
G490616 NA non-coding downstream 68749 26466002 ~ 26466279 (-)
G490517 NA non-coding downstream 144883 26389780 ~ 26390145 (-)
G490513 LOC106585548 non-coding downstream 164650 26369257 ~ 26370378 (-)
G490511 NA non-coding downstream 169583 26365205 ~ 26365445 (-)
G490963 NA non-coding upstream 157696 26707102 ~ 26729484 (-)
G490978 NA non-coding upstream 196836 26746242 ~ 26750563 (-)
G490982 NA non-coding upstream 206374 26755780 ~ 26818625 (-)
G491027 NA non-coding upstream 273487 26822893 ~ 26823157 (-)
LOC110525606 LOC106585545 other downstream 251859 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1037539 25496963 ~ 25497489 (-)
G489038 NA other downstream 1428458 25106205 ~ 25106570 (-)
LOC110525585 LOC106585524 other downstream 1825608 24655788 ~ 24715090 (-)
G491291 NA other upstream 275461 26824867 ~ 26867158 (-)
G491539 NA other upstream 667201 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1185590 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 1277825 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2861809 29411215 ~ 29415314 (-)
LOC110525607 LOC106585546 coding downstream 163771 26293688 ~ 26317316 (-)
G490886 NA non-coding upstream 8038 26543490 ~ 26544586 (-)
LOC110525619 LOC106585557 other upstream 11770 26481087 ~ 26551627 (-)

Expression


Co-expression Network