LOC110525620 (LOC106585558)


Basic Information

Item Value
gene id LOC110525620
gene name LOC106585558
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26553538 ~ 26564330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605903.2
atcgctCTACCGGAAATTCACAAGAAGaagtctgtctctcactgacgTCAATGCAGGACTAGGTTGCGCCATTTTGAAAGTAGAAGCAGGGAGGGGAAAATTTTGCAAGCAAGCAGCCAGCTAAACAAGAGGCTTTGCAAGGTGTTCCAAGGGAGAGTTGCTGATTGTCAAAGCACTGCTAAGCAAGATAAGTGACATGAGAAGTTGAAGAATAGTAGGGGGAAAGCCACACACTCTGTAGCTTTACGATTCACCTGCACTCATCGAGATTCTGCTTGTACACACCCTAGCACGGTAAACTGGAAAGATAAGCAAGGGCCCCAACCAAGGCAAGCCCTCCTCGACAGAGATTCCCTCTCCACCATGGCAGGAGCTGGCGGCGGAGGCAATGATGTGCAGTGGTGTTTCTCTCAAGTCAAAGGAGCGATTGATGACGATGTGGCTGAAGCTGACATCATATCCACTGTGGAATTCAATCACTCTGGGGAGCTGCTAGCCACTGGGGACAAGGGGGGCCGCGTTGTGATCTTTCAGCAGGAGCTAGAGAGCAAGAACCAGCCACAGTGCCGTGGGGAGTACAATGTTTACAGCACCTTCCAGAGCCACGAGCCCGAGTTCGACTACCTGAAGAGCCTTGAGATCGAGGAGAAGATCAACAAAATCCGGTGGCTGCCTCAGAAGAACGCTGCACAGTTCCTCTTGTCCACAAATGATAAAACTATAAAGCTGTGGAAAATCAGTGAACGGGACAAGCGACCAGAGGGGTACAACCTCAAGGAAGAGGATGGGCGCTACAGAGACCCCACTACCGTCACAACACTACGGGTCCCAGTGTTTCAGCCGATGGACCTGATGGTTGAGGCCAGCCCCAGGCGAGTGTTTGCTAATGCACACACCTACCACATCAACTCCATCTCGGTCAACAGTGACTGTGAGACCTACTTGTCTGCTGATGACCTTCGCATCAATCTCTGGAACCTAGAGATCACTGACCGCAGCTTTAACATTGTGGACATCAAGCCAGTCAACATGGAGGAGCTGACAGAGGTGATTACAGCAGCAGAGTTCCATCCAAACCAGTGCAACACATTTGTCTACAGTAGCAGCAAGGGCACCATCCGCCTCTGtgacatgagagcatcagctctcTGTGACCAGCACTCCAAACTGTTTGAAGAGCCTGAAGATCCAAGCAATCGTTCATTCTTCTCTGAGATTATCTCTTCCATCTCTGATGTCAAGTTCAGCCACAGTGGGCGCTACATGATGACCCGGGACTACCTGTCCGTCAAAATCTGGGACCTCAACATGGAGTCCCGTCCAGTAGAGACTTATCAGGTCCATGAATACCTCAGGAGTAAACTGTGCTCACTCTATGAGAACGACTGCATCTTTGATAAGTTTGAGTGCTGCTGGAATGGAAACGACAGTGTTGTGATGACGGGCTCATACAACAACTTCTTCAGGATGTTTGACCGAGGCTACCGGCAGGATGTGACCCTGGAGGCGTCTCGGGAAAGCAGTAAGCCTCGTTCTGTGCTCAAGCCCCGCAAGGTGTGCACAGGTGGGAAGCGCAAGAAGGACGAGATCAGTGTAGACAGCCTGGACTTTAACAAGAAGATCCTCCACACGGCCTGGCACCCTCAGGACAACATCATCGCCGTGGCCACCACTAACAACCTCTATATATTTCAGGACAAACTGTAACAAATATTCAATGAACCCTTCATATCCCAGATCCCACTTTAGCCTCACTACTCTGGTCCCCAACATCTCAACTGGAAAAGTGCAGCAAAACGCCTCTGTTTTGATGGCTTTCTTAGTCTTATTTCCTGTTCAGGGGGCTCCAACAGTACCACACTTCTTCTGCCACATTGCAACTGTTGTCCACTACATCCCAAAGGGAACACTTTTTTAACACTAGTCTTTGCGATATTGATATGTTGCTAATTTAACGGTTTTGGTGCCACAagcattttttatatatacaagCATTTTTTTCTTTTGATAGGAAGTTGTtccctcccacccctccatcGTTGACACAGATCACAACATTGCTGTTCTTCACTGACCAAATTGGCAAGCTGACAGCTCTCAATTTTTGTCCCAGGCCATTTGTCAAATTTCCAAGTTTGCTCACCCTctttcacatacagtacacacttacTCTAAACATTGATGTagacacgtatacacacacacacaatagctcAACTCAGTTGGTGGGCTGGGTTGGGGTCTGGGGGTAATTTCGAGACAACTATGTAGAATATAGAGTTAGTCAGTCTGAGACTACAGATGAGAGGGTTAACCGTCTGGTAAGCACAGTGCCCTTCTCCAGAGGTAGCCTACAGTATGAAGCCATTGCTTTTCCAAGTAAACGGTAGTGGGCAGAGGTATTGCAGCCTAATCTCCTTCTTGCACTTAGAGTGCCACCATGTACAGCTCAGCACAGAGGCTCCAGTGCAGTAATTGCAGGAGAAAGACAGGCCTGCCTTGGCTGACCTGCATGACTTGTCCGTTTTTAAATGTAAGCGCGGCACCCATTTGTACCTCTGCTGCTCAGTTCCATGCATGCGTCTTGACTTATGCTTCTTGTGAATTTAAGTTTTCCCTCTGGATcaagttttttgtttgttttttaatgatGTTTTGTACTTCAGATAAAGAATAATCACTATAATTAGTTTATTTTTGTATGAATTAAGAAGACAGAAATATTGATTGATATCCTTTAATCCCTTCGCACTACTTGGTGTAGTCTGATCACTGTTGTCTATTAAGCTGTAGGTTTTGGACTGGTCTATGGACTGAAGGATTACTTGGACTGGTGAAAGTTAATGTGACTTACTGTGTTAAATTCACGTGGGCTGCGGGTTTGAGGATGGAGTGCATATTAATGTGCCATTAAGAAAGGCTTTATGCATGTTGGATGTCCAAATAAGTATTTTCAGGTATGCGTCACTGTGGAATCATAATGGTCATTCGTTTTTGTATTTGGGTTACTGTAACCGATATTGACTGGAATGGATTCGGGTGCTTCTGAGTTTAAGCTAGTTCATTTGCGCTAATTGTTTTAACTCCGGTGTGGATCTGTGTGCATCCGTTTGTTTGCCATGGCTGTGTTTTCAAAAAAATTGCACTGAGTAAAATATCATTTTATTATTAATAGCCCATTGTACGTTGAGAATGGGAAAGGCATTATCTGTTTGCTTCAGTTTGACTGAAGAAATGCTCTTAACCGCACGTTCACTGAGTATCAGGTTTATTGACTAGACAGGGTTACTGACTTGAAATATTTTATGAAACAATATTTTCTCTCTTTGATTGTGCGTAAGTTCTTTATGCAGGAAACAAACAAAACTGTTAAGTGAGTCGTGTTAGTGGGTATCATTGGATGGAATTACTGGGTAATGTCAGCTCAGGGCATTGGAGACAGTATTTAAAATAAACGGCATTTCCAGCGTTTGTACTGTATTTAGTCAATGTGGCATTCTTTGTTGATATTTTGGGAGGTAAATAATTTTTTCTTCTGTCTGTAGCACATGGCTACGCGAATACTTGATTGACGAGATACCAATTGTGAGCCATTTGATCGTAATAAGTTAGCATTAAGAGTATCAATTGAGTCTCATTTACTAGTAAGGCTACCAATAAGCACTATTGCAGACTGCAATAAAGGTCATTAGCTCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605903.2 True 3697 mRNA 0.45 10 26553538 26564330

Neighbor

gene id symbol gene type direction distance location
LOC110525619 LOC106585557 coding downstream 4132 26481087 ~ 26551627 (-)
dpysl2a LOC106585556 coding downstream 22706 26502944 ~ 26530832 (-)
tmem230b LOC106585554 coding downstream 95655 26455731 ~ 26457883 (-)
igsf9b LOC106585552 coding downstream 98118 26404186 ~ 26455420 (-)
LOC110525611 LOC106585549 coding downstream 162247 26382960 ~ 26391291 (-)
LOC110525621 LOC106585565 coding upstream 77931 26608848 ~ 26711398 (-)
LOC110525622 NA coding upstream 149126 26713456 ~ 26724026 (-)
LOC110525623 cenpe coding upstream 161922 26726252 ~ 26732944 (-)
LOC110525624 LOC100380864 coding upstream 173949 26738279 ~ 26740643 (-)
LOC110525627 LOC106585561 coding upstream 263828 26828158 ~ 26876043 (-)
G490886 NA non-coding downstream 8952 26543490 ~ 26544586 (-)
G490621 NA non-coding downstream 85207 26467521 ~ 26468331 (-)
G490616 NA non-coding downstream 87259 26466002 ~ 26466279 (-)
G490517 NA non-coding downstream 163393 26389780 ~ 26390145 (-)
G490963 NA non-coding upstream 142772 26707102 ~ 26729484 (-)
G490978 NA non-coding upstream 181912 26746242 ~ 26750563 (-)
G490982 NA non-coding upstream 191450 26755780 ~ 26818625 (-)
G491027 NA non-coding upstream 258563 26822893 ~ 26823157 (-)
LOC110525606 LOC106585545 other downstream 270369 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1056049 25496963 ~ 25497489 (-)
G489038 NA other downstream 1446968 25106205 ~ 25106570 (-)
G491291 NA other upstream 260537 26824867 ~ 26867158 (-)
G491539 NA other upstream 652277 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 1170666 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 1262901 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2846885 29411215 ~ 29415314 (-)

Expression

LOC110525620(LOC106585558) Expression in all Baseline Samples

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LOC110525620(LOC106585558) Expression in each Bioproject

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LOC110525620(LOC106585558) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network