LOC110525624 (LOC100380864)


Basic Information

Item Value
gene id LOC110525624
gene name LOC100380864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26738279 ~ 26740643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525624
TCCAAATGATGACGCAGTCCAAAGAAAATCAAAGGATGAGACTGCGCTAATTTGATTCTACAAGCCGTAATCATCCACAACGCGCTCTCTTTTAGCGGTGAAATACGGATAACGTGTAGCTAGTTACCGGAGAATATTACGTTCGGAAACATAGCTGAGAACATCAAGCGGGTCAACTTTATAAAGTAGGTTGTTTTGGGACGCTCCCGACCGACTGGAAACCAAGTAAACGAAAACGTTACAGAACGTGAGCCACATGAGTTCTGACGCTAAGCCCGAGCCTAAACAAGCCTAAATGGAGAATGAAAGCAAGTATCTCCCTGAGCTTCTGTCAGAAAAAGACCGTCTGGATTCTTTATTCACACATGCAATAAAACTTATATCTACAGAGATAGAAAGGAGAGACaaataaagagacagaaagagaaactaACCTGGGCCTGTTTACCACAAAGAACATCAAGGTCAAGGAACGTGTACTCATTCCAGTCAAACAGTACCCAAGGTTCAACTTTGTTGGTAAGATTTTGGGACCCCAGGGGAACACAATCAAGCGCCTCCAGGAGGAAACTGGAGCAAAGATCTCAGTATTGGGCAAAGGTTCCATGAGGGACAAGGTGAAGGAGCAAGAGCTGAGAAAGGGTGGTGAGCCCAAATATGCTCATCTGGGCATGGAACTGCAGGTCTTCATAGAGGTGTTTGCTCCTATACCTGAGGCATACCTGCGCATGGCTCACGCCATGGACAAGGTCAAGAAGTTCCTCATCCCTCAGAACACCATGGATGGTATATGCCAGGATCAGTTCATGGAGATTGGCTACCTGAATGGCGGTCAAGATTCACAATCCAGGGGACGAGGGGGCCCTCCAGACAGGGGCAAGGGAGCACCCCCACCCAACTCAGTAGGAGCCAGGGGCAGAGGAATGCTACCTCGTGGAGGCACTCAAAGTGGTGCCGCTTCCCAATGAGGACCTCCCAGGGGTGTGTCGGCCAGAGGGGCTCCAGCTGGTCGGGGTGGACCCCCCTCTCCACCTGCTAGAGGAGGCACTACACCCCGTTCCAGACCACCCACCCCAGGGACACCAAGGATGCTACCATCCCCAGCCCACTCCCaccagcagcaccaccacccaAGGCTGAGGCCTACAATGAATATCCTGTCTATGAAGAAAGCTACGCTGAGCCTGCATATGAAGGTTATGACAACTTTTACAGTCAACAACCTCCACAAGCGGACACAGAGTACTATGACTACGGACATGGTGAGGCTCAGGAGACTTATGAACCCTATGCCCAGGATGATTGGGAGGGTTAATGGTCCTCCACTGGAGGCAAAACCCCTCCAGCGAGGCAGGATAAGAGGGGGGCCTACGGAGAGCATCCATATGGAAGATACTGAACAGTCTCTGGTAGAGGGTTGCCATTTATAACTCACTTAACTCTCCAAAGTAATTtccttaaatgtttttattttacattttctgtagtttttttgttttttaatgatTTGAGAGCAGGACAACTGGATGTATGGTATCGAGTGTGCGTAGCAAGCAAATGCAAGGATTTGGATAATACGTTTTCATTCAATGTTTGTTTCCACTGCATCATTGACAGTTTTAATATCTAATTTAATGGTTACTTAGAGAAACGTGATACCTTGTATAGTgttaaatgttattttttaagGTTTGTTTCAGTTTGTCTTGAAATGATTTGTGGCAGTTGCAGTCTCATTTAGGCTGCATTTCTAACGTATTTTTAGCTAAAACTTGATTAATGACGTCAATGTAACATCGGCAACTAGACTAAGAATATATGGGGAAGAACCAACATTTTCTAGACAAATCATTTTTGCAGAAACTAACTCCCTATAGAGGCATagatttcaatgttttttttcttttcttaggGTTTTGAAATCTAGCCTTATTAGACACTGAGACAGTCTGTCCTAAAATATCTGTAAGTATTTTAAATTCGACTTGGTAGTAAGTACATTCTACTTTAGATAACTTTTGTTTGGCTTACTTTGGTCTACATTTTATTGGGCTGACTTTGATAGAAATGCTGATAAATTGCTCACTTTGTTTGAATGGTCCTACAAGAATTTGGACATGGTCCTCACATGGTCTTCTTGTGAAGGAAAACTGCAGCCATCTCAATATTATATGCACTTACACTTATTAAGAACGTTTTGTATATTGCTTTCTAAAGTTGTGCCGTCTCCAAAATGCATAGTGCTACGTACGTGTGTACTCTTGCCTAAATAGGATACTAaatatatccccaaaatgttttTCTGCAGTGCGTTGTATCAATAAAGCAtaatcttttttcttttttttatcacacaaaaaaaaaa

Function

NR:

description
KH domain-containing, RNA-binding, signal transduction-associated protein 1-like isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525624 True 2365 mRNA 0.43 1 26738279 26740643

Neighbor

gene id symbol gene type direction distance location
LOC110525623 cenpe coding downstream 5335 26726252 ~ 26732944 (-)
LOC110525622 NA coding downstream 14253 26713456 ~ 26724026 (-)
LOC110525621 LOC106585565 coding downstream 26881 26608848 ~ 26711398 (-)
LOC110525620 LOC106585558 coding downstream 173949 26553538 ~ 26564330 (-)
LOC110525619 LOC106585557 coding downstream 188873 26481087 ~ 26551627 (-)
LOC110525627 LOC106585561 coding upstream 87515 26828158 ~ 26876043 (-)
LOC118965120 NA coding upstream 136679 26877322 ~ 26877454 (-)
LOC110525629 LOC106585566 coding upstream 143220 26883863 ~ 26888305 (-)
LOC110525021 nkx31 coding upstream 510415 27251058 ~ 27252377 (-)
LOC110525638 LOC106585585 coding upstream 530178 27270821 ~ 27278551 (-)
G490963 NA non-coding downstream 8795 26707102 ~ 26729484 (-)
G490886 NA non-coding downstream 193693 26543490 ~ 26544586 (-)
G490621 NA non-coding downstream 269948 26467521 ~ 26468331 (-)
G490978 NA non-coding upstream 5599 26746242 ~ 26750563 (-)
G490982 NA non-coding upstream 15137 26755780 ~ 26818625 (-)
G491027 NA non-coding upstream 82250 26822893 ~ 26823157 (-)
G491417 LOC106585572 non-coding upstream 298401 27039044 ~ 27039874 (-)
G491475 LOC106585563 non-coding upstream 368731 27109374 ~ 27110138 (-)
tmem230b LOC106585554 other downstream 280438 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 455110 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1240790 25496963 ~ 25497489 (-)
G489038 NA other downstream 1631709 25106205 ~ 25106570 (-)
G491291 NA other upstream 84224 26824867 ~ 26867158 (-)
G491539 NA other upstream 475964 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 994353 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 1086588 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2670572 29411215 ~ 29415314 (-)

Expression


Co-expression Network