LOC110525629 (LOC106585566)


Basic Information

Item Value
gene id LOC110525629
gene name LOC106585566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 26883863 ~ 26888305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605918.2
cagtgcatTCATAACAATCCGAACATTACGAAACTTCTGTTCGATCAAATAAGCCTGGTAACaaattagcaattacattttttgttgaccaaaaTCGACACTTTCATTGACCACTTCGTGGTCTTATTTTCGTGGAAAGATTTGGGGCAGAGTAaaccctctcgcttcgcctcttcttCTGGTTTACCCAATGGCAAAGATACATAGGAGTCAGGTTAGGTTGTGGGCAATGGGCATCTTTGTCCATGGTTTACCCAGAACATTTATCTCAAACCAGAGTAAATCATCTTTGGTGGGGTGTGGTGGTCTCTGTAACCAAGGCAAACTGATTTATGCAGCAGTAACCTGTTTTGGGACTATGGGGTTGGGACTACAAGGATGCTTGAAATGATGATTCACAGTAGTGATTTGTATTAGCTGTAAAAACCCTCCATGCTTGATTACCTGTGAATCTGATGTGAGAAATGGCATGGTATATCTACAGAATAATATGAGTACATGTTTTTAGAGAATTTAGACGTTTTTACAAAAATATCATTCACAACACTTAATTTTATTGATAAGGCTTCCTCTTAGTGGAACTTTAAATATACATCAGTTAGATCTGTGAGCACTTGTATGGAGTACCTGGTGCCTAATCAGAATTTTCATGAAAATATCATTACATTCACAACTTTTAATGGTCTTCATAAAGCTTTCTCAAGACATGAACTTTAAATAGACATGAGTTAGAGGTTTGAGAGCTGGTATGGCATATTTAGAGTCTGAGTAGCTAGATAGAGGGAAACATCTTTAGATGATTAATTGATTTTCATAAAATATAATTACATTCACAATTTTAAATTGTCTTCAAAAGGCTTCCCGAAGCTGTGACCATTGTGTATAAATTGTTTTGGAGTCTGTGCGAGGTTGCATATATAGACTAGAGCCTTGTCTGAATAGCCAGATAAAGGAAATTGAAAATTGAAAATTCAGGGGATAGCCCAAATGGGTTTCAAACCCAGAAACTGTCAGTCCAGTAGTACTGTCACCATAAAGCCTGAACTAAGGGCTACATAAAAATGGCAAAGGTTTTTAATACTGATACAAATGTGGAGCAAAAGCTAAACATACAAAAATGAGGTTCAAAATGAGTCACTGCAGTGATCTGGACTCACACAGTTGTAGGGTAGTGGCAAAATGGTGCAGTGCTGTGTCATTGTTGGCAAAAGTCTTGCTCCCTCAATTGCCAGCGCTGTAGTTTAAAGCCTCTGCAGTCACCTGATGCACTGCTgagattttgtttgtttttaggggCTAATGGTAATATTTGCTATTCATCGTGTTTCAGAGAGATAGACATGCTTCTCAGCTAAATGTATATTTTGTTTTCTCAGACTGTCCTCATTGCCCTCCGTCTCTCCACTGCTTATCCCCGCCCCTTATCACTGCTTATCCCCGCCCCTTACATCTCTCTCATTCCCTTCCTTAACAGCTCAGACTTGGCTGGCTGACGCTATCATTGATCCCTGCTGTCAGTGCTCTAAAAAAATGTTTGCGTCACAGTCATTACCAGCTCTATAAAAGATACAGTGATGCAGATTCCACTGTGTCGACCCAGCAACTCTATTACAGTTAGAGCTGCCTGTTTCGCAAGTCATGAGTTCCATTGCTTACGACCCTTACTTTCCCTCCTCTTCCCACAAGAGGAGGGTGATGCTGCGCAGTGGAGGGTATGGAGACAGTGCGGGAGGGATGGCATCCAGGTCTGTGTATTCCAGCCACTCTGCCCCCCTCTCATACCATGGGTCATCCCGACTGCATTACCCAACATACAGCCGTAGCTCCTCCATGCTGCTGTCTACCCCCAGATCTGCTGCCGCTGCTGAACTCGACATCAGCCAGGCGGTGCAGGTGAGCACTGAGTTCAAGGCCGTGCGGACGCAGGAGAAAGCCCAGCTACAGGAGCTGAATGACCGCTTTGCCAGTTTCATTGAGCGCGTCCACGAGCTGGAGCAGCAGAACAAGGTGCTGGATGCTGAACTGCTGATCCTCAGGCAGAGGCATGGCGAGCCCTCCCACCTCAGGTCCCTGTATGAGCACGAGATCCGCCAGCTCCGTGCTGCTGTGGAGGAGGCCCGCGATGAGAAACAGGCTGCCCAGAACCACAGGGACCAGATGGAGGAGGTGCTGCAGAGTCTGCAGGGACGTTATGAAGAGGAGGTAGTGAGCAGGGAAGAGGTGGAGGGGCAACTGATGGATGCCAGGAAAGGGGCGGATGAGGCTGCTTTGGGCCGTGCTGAGCTGGAGAAGAGGACGGAGACGCTGCTGGATGAGCTGGCCTTCCTGAAACGTCTCCATGAGGGGGAGATAGCTGAGCTGCAGGCACAGGTGCAGTACAATGCCCAGGTGTCCGTGGAGATGGAGGTGGCCAAGCCAGACCTGTCTTCAGCCCTCCGAGACATCCGTGTCCAGTATGAGAAACTGGCACATCGCAACCTCCAGTCAGCCGAGGAATGGTTCCGCAGCAAGGTGAGTGTGATGACAGAAGGCACCGCCCGCAACACAGACAACATTCGCAATGCCAAAGAAGATGCCGGGGAGTACCGCCGCCTGATTCAAACACGGAACCAGGAGATTGAAGCCTGCCGTGATAGGAACCAGTCCCTGGAGAATCAGTtacaggaggtagaggaggaacaGAGTGCTGAGATCGCAGCCCTACAGGAATCAATTGGCCAGCTGGAGGATGAGTTGAGGACAACCAAGAATGAAATGGCTCAGTACCTGAAGGATTATCAAGACCTCTTGAATGTTAAGATGGCTCTGGACATCGAGATCGCAGCTTACAGGAAGCTGCTTGAAGGGGAGGAGAATCGCTTCAGTGCAGTAGGACCAGGGACAATGTCCAGTGTCTATTCCCAAAGCCTGTGTGTTGCCCCATCCCGCAACCGCCCCATGTTTTCCATGCAGTCCAGCCTGACCTCTGGTGCCCCCTACCTACGCATGTACAGCTCatcattctcctctgcagatgaGATTATAGCTGCTAGTCAAGCACAGCCTGCTGAGTCAAGTcctcaggaggaagaggaggaggaaggagagaagggagacgaGGAAGCAAAGGAAGAGGATGTTGAAGAAGAGAAAAAAGCAGAAGATGACAATGGAGATATGAaggaagaggcagaagaggaggCTAAAGAAAATGGAGACGATGGAGGAGATGAAAACCAAgaaggtagagatggagaggaggatggagccAATGAAACAGAAGAAGGGCATGATAAGGGAGAAGAGGATGAAAGCAAAAAGGAAGTAGAAGTGGCAGAGGAAAAAGAGAAGCCAAAGGACAAAAATATTTAAATCAAGATTCTTATGAATGACACATTGATTGTCCCATATTGAGGTGCTCTACAAAAAAATCCATTAGTTCAGTACAATCAATCAGGAAACCATTGCATACAGCAGAGGCCTTTATGTTTGTGTGCAAAGAGGTAGTATGGCTGTACACTGAGTGAAGCAAAACATGacagtgtatgcatgtgtgtgccaGCAAGGCGATAAATAATAAAAAGCAAATACCTGTATATGAAATACATTAAAATAAATGCAATATGAGTGCTCTATGGGTGAGAGAAATGAGAAAGAATGTGTGGAGTTTTGTGAGcaaatactgtattgtattagcCTAAGAAATATTTGTTTGAAAAACCTATGTGCATTTCTGTCACCACAATATGCAGATAAGAACACCACTGTGTTCAATATACTTGATTTTCAATGCCTTAGACATATTCTTAGTGGGATCAattatgtactgtactgaacacaAATAAAGACTTAAAACATGTCCATCTGAATACA

Function

NR:

description
neurofilament light polypeptide-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605918.2 True 3852 mRNA 0.46 4 26883863 26888305

Neighbor

gene id symbol gene type direction distance location
LOC118965120 NA coding downstream 6409 26877322 ~ 26877454 (-)
LOC110525627 LOC106585561 coding downstream 7820 26828158 ~ 26876043 (-)
LOC110525624 LOC100380864 coding downstream 143220 26738279 ~ 26740643 (-)
LOC110525623 cenpe coding downstream 150919 26726252 ~ 26732944 (-)
LOC110525622 NA coding downstream 159837 26713456 ~ 26724026 (-)
LOC110525021 nkx31 coding upstream 362753 27251058 ~ 27252377 (-)
LOC110525638 LOC106585585 coding upstream 382516 27270821 ~ 27278551 (-)
LOC110525639 LOC106579858 coding upstream 454640 27342945 ~ 27351891 (-)
LOC110525643 LOC106585590 coding upstream 657303 27545608 ~ 27560556 (-)
LOC110525644 LOC106585592 coding upstream 673252 27561557 ~ 27578521 (-)
G491027 NA non-coding downstream 60706 26822893 ~ 26823157 (-)
G490982 NA non-coding downstream 65238 26755780 ~ 26818625 (-)
G490978 NA non-coding downstream 133300 26746242 ~ 26750563 (-)
G490963 NA non-coding downstream 154379 26707102 ~ 26729484 (-)
LOC110525621 LOC106585565 non-coding downstream 235348 26608848 ~ 26711398 (-)
G491417 LOC106585572 non-coding upstream 150739 27039044 ~ 27039874 (-)
G491475 LOC106585563 non-coding upstream 221069 27109374 ~ 27110138 (-)
G491435 LOC106585567 non-coding upstream 249851 27138156 ~ 27140754 (-)
G491492 NA non-coding upstream 256574 27144879 ~ 27145306 (-)
G491497 NA non-coding upstream 265401 27153706 ~ 27192358 (-)
G491291 NA other downstream 16705 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 332236 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 426022 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 600694 26271759 ~ 26283169 (-)
G489511 hmcn2 other downstream 1386374 25496963 ~ 25497489 (-)
G491539 NA other upstream 328302 27216607 ~ 27244193 (-)
LOC110525653 NA other upstream 846691 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 938926 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2522910 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 2590350 29411204 ~ 29483533 (-)

Expression


Co-expression Network