Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525021 |
| gene name | nkx31 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 27251058 ~ 27252377 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| homeobox protein Nkx-3.1-like |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K09348 | NKX3-1; homeobox protein Nkx-3.1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021604982.2 | True | 1105 | mRNA | 0.41 | 2 | 27251058 | 27252377 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525629 | LOC106585566 | coding | downstream | 362753 | 26883863 ~ 26888305 (-) |
| LOC118965120 | NA | coding | downstream | 373604 | 26877322 ~ 26877454 (-) |
| LOC110525627 | LOC106585561 | coding | downstream | 375015 | 26828158 ~ 26876043 (-) |
| LOC110525624 | LOC100380864 | coding | downstream | 510415 | 26738279 ~ 26740643 (-) |
| LOC110525623 | cenpe | coding | downstream | 518114 | 26726252 ~ 26732944 (-) |
| LOC110525638 | LOC106585585 | coding | upstream | 18444 | 27270821 ~ 27278551 (-) |
| LOC110525639 | LOC106579858 | coding | upstream | 90568 | 27342945 ~ 27351891 (-) |
| LOC110525643 | LOC106585590 | coding | upstream | 293231 | 27545608 ~ 27560556 (-) |
| LOC110525644 | LOC106585592 | coding | upstream | 309180 | 27561557 ~ 27578521 (-) |
| LOC110525648 | LOC106585594 | coding | upstream | 400408 | 27652785 ~ 27705710 (-) |
| G491497 | NA | non-coding | downstream | 58700 | 27153706 ~ 27192358 (-) |
| G491492 | NA | non-coding | downstream | 105752 | 27144879 ~ 27145306 (-) |
| G491435 | LOC106585567 | non-coding | downstream | 110304 | 27138156 ~ 27140754 (-) |
| G491475 | LOC106585563 | non-coding | downstream | 140920 | 27109374 ~ 27110138 (-) |
| G491417 | LOC106585572 | non-coding | downstream | 211184 | 27039044 ~ 27039874 (-) |
| G491598 | NA | non-coding | upstream | 64501 | 27316878 ~ 27317100 (-) |
| G491602 | NA | non-coding | upstream | 67752 | 27320129 ~ 27320361 (-) |
| G491603 | NA | non-coding | upstream | 68031 | 27320408 ~ 27320638 (-) |
| G492067 | NA | non-coding | upstream | 243800 | 27496177 ~ 27506760 (-) |
| G492122 | NA | non-coding | upstream | 348968 | 27601345 ~ 27601642 (-) |
| G491539 | NA | other | downstream | 6865 | 27216607 ~ 27244193 (-) |
| G491291 | NA | other | downstream | 383900 | 26824867 ~ 26867158 (-) |
| LOC110525619 | LOC106585557 | other | downstream | 699431 | 26481087 ~ 26551627 (-) |
| tmem230b | LOC106585554 | other | downstream | 793217 | 26455731 ~ 26457883 (-) |
| LOC110525606 | LOC106585545 | other | downstream | 967889 | 26271759 ~ 26283169 (-) |
| LOC110525653 | NA | other | upstream | 482619 | 27734995 ~ 27737024 (-) |
| LOC110525655 | LOC106585601 | other | upstream | 574854 | 27827231 ~ 27885634 (-) |
| G494389 | LOC106585296 | other | upstream | 2158838 | 29411215 ~ 29415314 (-) |
| LOC110525681 | hectd4 | other | upstream | 2226278 | 29411204 ~ 29483533 (-) |
| LOC110525684 | LOC106585295 | other | upstream | 2249876 | 29502192 ~ 29520980 (-) |
