LOC110525638 (LOC106585585)


Basic Information

Item Value
gene id LOC110525638
gene name LOC106585585
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27270821 ~ 27278551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605944.2
GCACGTCAAAGGAAATCAGTGTACGGTCCAGGGTAGAGGAATAGCCGCATTGGGTAGATGGTACCTActtagtgatatatttacattgttGAAAACACGGCGCTGTACATATTCAGAGCTGTATGAACTATTAATAAGATAAGCAAGAAACACTATTCCTTGTATTTTGTTAGATCATCAGTGATTATTGAACAATGCCTTTGATGACCGGACTTTTTCTTCTAATGGTGCTGATTGCATCTGCATATGAACTGGATCAGAACGAGTCGTATTCACCCAGAAGAGCACGATTTTCTGCAAATACCCCTTCTGACGTGGCACGCTGTCTGAACAGTGCCCTCCAAGTAGGCTGTGGAGCCTTCGCATGTCTGGAGAACTCCACGTGTGACACAGATGGCATGCACGACATCTGCAAGTCCTTTCTGTACAGTGCAGCTAAATTTGACACTCAGGGTAAAGCCTTTGTGAAAGAGAGCCTCAAGTGCATTGCCAACGGCATCACCTCCAAGGTGTTCCTCACCATCCGCCGCTGCTCCACCTTCCAAAGAATGACCTCAGAAGTTCAGGAGGAGTGCTACAGCAAGCTGGATATCTGCACTATCGCCCGCACCAATCCAGATGCTATTGGAGAGGTGGCTCAGCTCCCAAGCCACTTCCCCAACAGGTTTTACGGTAAGCTCCTCCAGAGCCTGATGAACTGTGATGAGGAGACTGTGGACCTGCTGAGGGCCAGTATGGTGTCCAGACTTGGCCCAGAGATGACCATTCTCTTCCAGCTTCTGCAGAACAAACCCTGCCCCTCGGTTGCTGCTGCTGCCGTTCCAACTGGAGTGGAGGGCCGAAGGAGCTCACGGTTGTCAATGGGCCCACACATGTATAAGATCCAGCCTAGTCTACGCAACAGAGACTCTGCCAGCCATTTTAGCAAGAAGCGTGCCACTGGTGACAGCTCCTAACTCCCACTCAGATCCAGAAACTACACACACCCCTCAAAAACATAAGCCAACAGTGGTCTCTTCCCTTGGGTATTTAAGAATCATTCCTCTCCAGACTGGAAAATAACATGCACCTCTAAGAGAATATCCAATGTGTTTCAAGTATATTTTATATCAGAGTTTGAGTGTGAGAGATACTGTACCTAATGTTTGAGAGGATCCCCTCCCCTAAACTAGTTCCCAACTCTATCACTCACCAAGTTCATTgaacatgttgtattgtattctattgtatctCCACAACTTGGCCCTGTCCATTCCTGTTCACTCCCCACACTTGATATGAATTATCTGAGAGCCTAGTGGGATGATGTCCCTTTAAGTTTTCTGTCTAGGATTTCAAGCACAAACTTGCAGGTATGGTTCATATCTATAGAGCACAAATGTTACAAAAAAAATTGGGTTCAGAATACAAATGTTTATCCATTAATATAATATAAATTGATATGTCATCAATAGATAATGAAATGTGATTACTATTAGTTAATTACTAGATGTTTCATACAGTAAATGTGAGATATTTCTATATTATGATGAGACCATTAAAATAGGTAAGCATGTGCTATAGAAATCAGTGTCACATAGTCACTGACACAAACAGGATTCTTTTATTTATTGAGTTATTAGTCTCTGATGGCAACAGCCAGATCTGTGAGAGAGGCATGTCCCTCAGATGAGAGCTATCCTAATAAACTTTGCACAGGAAGTCACCTTAACTTGTAACCACCCGGAATGCCATGTAGCTAACTCCTATACCAGAGAATATAGCATTGTTTAGATGCCATTACATCTCTTCTGTCCTGAAACACTCAGTTCACAGTAAGTGTGTACCAGCAGTGTAACTTATGAGCAGGTGACCACCTGAGATTGATAGAGGCCACCCCATTAGATGAACAACATTCTCCCTGATGAATATGACATGGAGGGTTTGGATCATACACACTGACTTCCAGTGTTGATAATGACTATTTAAAAGCCTTGTTGGTATAATATTGATATTTATTTTCCTACTATATTATTTAAATTGTTATTTTATGATGTTGCTGTAGTTTTAGTTAGGTTACAGATATACAATTATAATGTGCAGTTTGGTCATAGCTTCTATTTCAGTGGGGGCTCATGATCAAATACTATAGGATCTGCCACTCTCTACATTGTCCTCTCTGTTGACTGAATAGGACCCATGTTATGACTCTGTGCTGGACATAGGGGAACAAGTTGGTCATTCAAGTCAGGTGATCTTCTTTATGAGTGTTACATGGGACTGTCACTTAAACAACCCATATTGCAAACATGGTCACTTATGTACTGGTGCAAGGGGACTCTGTTGggaatgtgtgtgtattttccAAGCACGATTGATTATGTTATGAAGGTAGAGAGAAATTGTGGTCAAGCCATTCATTGTACATTTAACAGCTAAACTTGAAGACTGAACTGCAAAGCATTTGCTGGATCTATCCTTAATATCATGCAAAATAATGTTTCTCTCAGAAAGGTTACCCTGGTGACATTACTCCATAAGTGCTTCAATAAAGGGAGGTTAATTCAAGAGACTTTTCACACATGCCTGGATGAAGGCGATGTGCACAAGGGGAAAATAATGTTAGAGAGATCTGGTGGGTTTACAATGCCAAATCATTTGAAATGTTAAGAACTCCCAAACCTATGCAATAATCTCTCATATGGAGGATTCACAATAACACACAACCTTGCCCTTTGTCACAAACAGTGCCAGCTGATGCTGAATGAATGTGGCAGCAGCTCATTTGCTCCCATACTCATAGTGAAGTATGCAGGCAATGCAATGTGCCCCTAGACTCCCCctttctgtttctgtgtttgttgcTGTGGTTTATGttgtattgttttttgttttgtctttttctTGGGATATAATAATATCTTGCTTTTAGTAGCAATATAGTGTATATTAAAAAGAAAAAGTAAGGAAAAAAATCACTCAAATGTTAAGACTGTATGAGCAATGTAGTGTATCTTACTACTAATGCTACATATGCACTTTGCATCTCTTATGACCACTATAAAGGGGCATTGAAACATTCATCACTTGCGATGGGTTGGGACTACTTCCTTCCTATACTGTTAATACATGTATTTCTGTGTCTGTAATAGCTGGACAAAATCCAAAACATTTGCTGCTAAACAATAGCTTGCTCCCCTGTATGATAGGTTATCATTTTACATTTACTTGGATATCTATGGTGAAAACCCATTCACAGACCCTGGCATCAATCTGTATACTTGCATTTGACCATTTTCATTCAGTTTGGTACTTCTTCTGGAATTTGTACATTTATTTGAATGTTGCTTGCAGTGAACATATTTGACAATAGTATTCTGTTTATTTCCTCTCCCTTGAGACTATGCTTATAAATGCAAAATCTGGGTAACTTTAGAGAATGTATCTTATATTGAATGTTTGTTCTGGTGAGGATGTGCCCAAACCTAGATGGTTCATTGACATATTTTATAATGTGTGTTTAGTTAAAGGTGCATAGTGTATGAAAGTCTGTAATAGGCAAATATGAGAATTAAATTAACAGACTTACAAGTCATATTTTGTTCTTTCGAGACATTTTGTTTTATTCATTAAGCTATTTGTTGCAAGACAAGAATAGGGTGCATTTTGGTGGTAGGCCTACTGGATTATTAGCTAAATCTATCCTTAGGGAAATCAGTGAAATTGGCAGCAGCGTTTTCTGTTGATACACCATATGTTTATGGCAGGCTGGGGACTGGGCTCCCTGAACTCTGGAACTCCATGGTACTCTCTCCCCTCAAGACTTGAAATCAATTTGCCAGAATTAAAACTACTTGGGTGATCAGTAAGAGTGAAATCTTAATCGTAGTGACAGTTACTTTACTTTCAAATTCATAGATGAAAGTTATCAGTAAGCCATTTGAGGAGATTACTTGCTGAAGTTCCGAATACAGTAGCTATGTTAAGCATGATTGATCCTTGTGAATCACTTGCACTTTAATACATACCCATCTACATATATACCCATTATGTATACATGGATGTATGGCTTTTTTCTCTGTGCTAAAAATATGAAAGATACAAATGCATCAACTGTGTGTCTTTGCTGATTAGAAATAAACTATTATCATAT

Function

NR:

description
stanniocalcin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605944.2 True 4132 mRNA 0.40 4 27270821 27278551

Neighbor

gene id symbol gene type direction distance location
LOC110525021 nkx31 coding downstream 18444 27251058 ~ 27252377 (-)
LOC110525629 LOC106585566 coding downstream 382516 26883863 ~ 26888305 (-)
LOC118965120 NA coding downstream 393367 26877322 ~ 26877454 (-)
LOC110525627 LOC106585561 coding downstream 394778 26828158 ~ 26876043 (-)
LOC110525624 LOC100380864 coding downstream 530178 26738279 ~ 26740643 (-)
LOC110525639 LOC106579858 coding upstream 64394 27342945 ~ 27351891 (-)
LOC110525643 LOC106585590 coding upstream 267057 27545608 ~ 27560556 (-)
LOC110525644 LOC106585592 coding upstream 283006 27561557 ~ 27578521 (-)
LOC110525648 LOC106585594 coding upstream 374234 27652785 ~ 27705710 (-)
LOC110525649 LOC106585595 coding upstream 435580 27714131 ~ 27724003 (-)
G491497 NA non-coding downstream 78463 27153706 ~ 27192358 (-)
G491492 NA non-coding downstream 125515 27144879 ~ 27145306 (-)
G491435 LOC106585567 non-coding downstream 130067 27138156 ~ 27140754 (-)
G491475 LOC106585563 non-coding downstream 160683 27109374 ~ 27110138 (-)
G491417 LOC106585572 non-coding downstream 230947 27039044 ~ 27039874 (-)
G491598 NA non-coding upstream 38327 27316878 ~ 27317100 (-)
G491602 NA non-coding upstream 41578 27320129 ~ 27320361 (-)
G491603 NA non-coding upstream 41857 27320408 ~ 27320638 (-)
G492067 NA non-coding upstream 217626 27496177 ~ 27506760 (-)
G492122 NA non-coding upstream 322794 27601345 ~ 27601642 (-)
G491539 NA other downstream 26628 27216607 ~ 27244193 (-)
G491291 NA other downstream 403663 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 719194 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 812980 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 987652 26271759 ~ 26283169 (-)
LOC110525653 NA other upstream 456445 27734995 ~ 27737024 (-)
LOC110525655 LOC106585601 other upstream 548680 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2132664 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 2200104 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 2223702 29502192 ~ 29520980 (-)

Expression


Co-expression Network