LOC110525639 (LOC106579858)


Basic Information

Item Value
gene id LOC110525639
gene name LOC106579858
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27342945 ~ 27351891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605946.2
GTGCTGGGGTCCAGACAGTTTAAGGTCTGGCTGGGCTCTAACTTTGCATACTTACCAGATCATTCAAACTGCCCTCTTTCAGCCCCCATGGCCACTACTATCACAGACTCACAGAAGCCTTTCTCTTTGGACCCCTACCATGTCTCTGAGGAATTTGGCTTCATCCTCCCTGCACCCCTGACAGAGTTGCCGCCATACTACCAGCCCTGGATGGACATTGCCCAGCATGTTACAGAGCTCATTTACTCTCACATGCTGCGCTCCCACATTCTCAAGATGCCCCTGCTGAACACCCAACTCCTGGAGAGCCACAGAGAGCTGCGTCTGGCCCACTTGGCCCTGAGTGTGATGACCATGGGTTACGTGTGGCAGGAGGGGGAGGATGACACAGTCAAGATGCTTCCCCGCAACCTGGCCATTCCATACTGTGAGGTGTCTCAGCGCCTAGGACttcctcccatccttacccatgcAGACGCAGTACTGGCTAACTGGAGGAAGAGGGATCCACAGGGACTGTTTGACATGGAGAACTTGGAACTGCTTGTCACGCTACCTGGTGGGGACAGTGTGAGAGGGTTCTTCATGGTCACTCTGCTAGTGGAGCTGGCTGCAGTGCCAGCCATTAAGAGTATTCCTTTGGTTATTAATGGGGTCCAGTGCGGTGATGCTGAGACTGTAACCAGAGCACTAGAGGAATTCAGCCAGGCCATACAGGGCATGACAGATGCACTTAAACTGATGCATGTGTATGTCAAACCAGAAGTCTTCTATGGCATTATGAGGATCTATCTGTCTGGGTGGAAAGACAACTCCTCCATGCCAGCTGGGTTGGTGTATGAGGGCGTCCAGGCAGAGCCTATGGAGTATTCTGGTGGGAGTGCTGCCCAGAGCAGTCTGCTGCACTGCTTTGATGAGCTGCTGGGTGTCAAACATGAAGCAAAGAGTGGTGCCTTTCTGACCCGTATGAGGAACTACATGCCCCCTTCCCACAAGCGTCTGATCCAGGACATCTCTCTGCAGCCCTCCCTGCGAGGCTTTGTCCAGCAGCAGGCCTGTGAGCCGCTAACCGCAGCCTTCCAGCTCTGTGTGACCAAGCTGCTTGCCCTCCGCAGCTACCACATCAACGTGGTCAGCCGCTTCATCACTGTGCCCGCTGCCCGTGCCCGACAGCTCCGAAACCAGGGGAACATTTCCCAGGAGGAGACTGTCAGCAGGGCGCCCACGGCACTGGAGGAGAAGGGCACCGGCGGCTCGGGCATCATGAGCTTCCTAAAGACTGTAAGGGACCGCACACGGACGTCTTTAATCTAAACTAGAATGTAAAATATGTATCGGATGACTAGTCCAGACCGACTGTGCTCATACCACAGTCCCCAATTCCTGCATGAGAGtcagacgccttgactttttctacattttggtaTGTTTAAGTATTATTCTAGAATTGATTAAATAGCCTTATGTTTTCA
>XM_021605945.2
AACTCTGTGCTGGGGTCCAGACAGTTTAAGGTCTGGCTGGGCTCTAACTTTGCATACTTACCAGATCATTCAAACTGCCCTCTTTCAGCCCCCATGGCCACTACTATCACAGACTCACAGAAGCCTTTCTCTTTGGACCCCTACCATGTCTCTGAGGAATTTGGCTTCATCCTCCCTGCACCCCTGACAGAGTTGCCGCCATACTACCAGCCCTGGATGGACATTGCCCAGCATGTTACAGAGCTCATTTACTCTCACATGCTGCGCTCCCACATTCTCAAGATGCCCCTGCTGAACACCCAACTCCTGGAGAGCCACAGAGAGCTGCGTCTGGCCCACTTGGCCCTGAGTGTGATGACCATGGGTTACGTGTGGCAGGAGGGGGAGGATGACACAGTCAAGATGCTTCCCCGCAACCTGGCCATTCCATACTGTGAGGTGTCTCAGCGCCTAGGACttcctcccatccttacccatgcAGACGCAGTACTGGCTAACTGGAGGAAGAGGGATCCACAGGGACTGTTTGACATGGAGAACTTGGAACTGCTTGTCACGCTACCTGGTGGGGACAGTGTGAGAGGGTTCTTCATGGTCACTCTGCTAGTGGAGCTGGCTGCAGTGCCAGCCATTAAGAGTATTCCTTTGGTTATTAATGGGGTCCAGTGCGGTGATGCTGAGACTGTAACCAGAGCACTAGAGGAATTCAGCCAGGCCATACAGGGCATGACAGATGCACTTAAACTGATGCATGTGTATGTCAAACCAGAAGTCTTCTATGGCATTATGAGGATCTATCTGTCTGGGTGGAAAGACAACTCCTCCATGCCAGCTGGGTTGGTGTATGAGGGCGTCCAGGCAGAGCCTATGGAGTATTCTGGTGGGAGTGCTGCCCAGAGCAGTCTGCTGCACTGCTTTGATGAGCTGCTGGGTGTCAAACATGAAGCAAAGAGTGGTATCCTAAAGACGTCATTTCCAGTGAGGGTGAATGTGCTATCTACATGTACAGGTGCCTTTCTGACCCGTATGAGGAACTACATGCCCCCTTCCCACAAGCGTCTGATCCAGGACATCTCTCTGCAGCCCTCCCTGCGAGGCTTTGTCCAGCAGCAGGCCTGTGAGCCGCTAACCGCAGCCTTCCAGCTCTGTGTGACCAAGCTGCTTGCCCTCCGCAGCTACCACATCAACGTGGTCAGCCGCTTCATCACTGTGCCCGCTGCCCGTGCCCGACAGCTCCGAAACCAGGGGAACATTTCCCAGGAGGAGACTGTCAGCAGGGCGCCCACGGCACTGGAGGAGAAGGGCACCGGCGGCTCGGGCATCATGAGCTTCCTAAAGACTGTAAGGGACCGCACACGGACGTCTTTAATCTAAACTAGAATGTAAAATATGTATCGGATGACTAGTCCAGACCGACTGTGCTCATACCACAGTCCCCAATTCCTGCATGAGAGtcagacgccttgactttttctacattttggtaTGTTTAAGTATTATTCTAGAATTGATTAAATAGCCTTATGTTTTCA
>XM_021605947.2
ACAAGTGAACTCTGTGCTGGGGTCCAGACAGTTTAAGGTCTGGCTGGGCTCTAACTTTGCATACTTACCAGATCATTCAAACTGCCCTCTTTCAGCCCCCATGGCCACTACTATCACAGACTCACAGAAGCCTTTCTCTTTGGACCCCTACCATGTCTCTGAGGAATTTGGCTTCATCCTCCCTGCACCCCTGATGCCCCTGCTGAACACCCAACTCCTGGAGAGCCACAGAGAGCTGCGTCTGGCCCACTTGGCCCTGAGTGTGATGACCATGGGTTACGTGTGGCAGGAGGGGGAGGATGACACAGTCAAGATGCTTCCCCGCAACCTGGCCATTCCATACTGTGAGGTGTCTCAGCGCCTAGGACttcctcccatccttacccatgcAGACGCAGTACTGGCTAACTGGAGGAAGAGGGATCCACAGGGACTGTTTGACATGGAGAACTTGGAACTGCTTGTCACGCTACCTGGTGGGGACAGTGTGAGAGGGTTCTTCATGGTCACTCTGCTAGTGGAGCTGGCTGCAGTGCCAGCCATTAAGAGTATTCCTTTGGTTATTAATGGGGTCCAGTGCGGTGATGCTGAGACTGTAACCAGAGCACTAGAGGAATTCAGCCAGGCCATACAGGGCATGACAGATGCACTTAAACTGATGCATGTGTATGTCAAACCAGAAGTCTTCTATGGCATTATGAGGATCTATCTGTCTGGGTGGAAAGACAACTCCTCCATGCCAGCTGGGTTGGTGTATGAGGGCGTCCAGGCAGAGCCTATGGAGTATTCTGGTGGGAGTGCTGCCCAGAGCAGTCTGCTGCACTGCTTTGATGAGCTGCTGGGTGTCAAACATGAAGCAAAGAGTGGTATCCTAAAGACGTCATTTCCAGTGAGGGTGAATGTGCTATCTACATGTACAGGTGCCTTTCTGACCCGTATGAGGAACTACATGCCCCCTTCCCACAAGCGTCTGATCCAGGACATCTCTCTGCAGCCCTCCCTGCGAGGCTTTGTCCAGCAGCAGGCCTGTGAGCCGCTAACCGCAGCCTTCCAGCTCTGTGTGACCAAGCTGCTTGCCCTCCGCAGCTACCACATCAACGTGGTCAGCCGCTTCATCACTGTGCCCGCTGCCCGTGCCCGACAGCTCCGAAACCAGGGGAACATTTCCCAGGAGGAGACTGTCAGCAGGGCGCCCACGGCACTGGAGGAGAAGGGCACCGGCGGCTCGGGCATCATGAGCTTCCTAAAGACTGTAAGGGACCGCACACGGACGTCTTTAATCTAAACTAGAATGTAAAATATGTATCGGATGACTAGTCCAGACCGACTGTGCTCATACCACAGTCCCCAATTCCTGCATGAGAGtcagacgccttgactttttctacattttggtaTGTTTAAGTATTATTCTAGAATTGATTAAATAGCCTTATGTTTTCA
>XM_036979750.1
ACGGTTTACAAGTGAACTCTGTGCTGGGGTCCAGACAGTTTAAGGTCTGGCTGGGCTCTAACTTTGCATACTTACCAGATCATTCAAACTGCCCTCTTTCAGCCCCCATGGCCACTACTATCACAGACTCACAGAAGCCTTTCTCTTTGGACCCCTACCATGTCTCTGAGGAATTTGGCTTCATCCTCCCTGCACCCCTGATGCTTCCCCGCAACCTGGCCATTCCATACTGTGAGGTGTCTCAGCGCCTAGGACttcctcccatccttacccatgcAGACGCAGTACTGGCTAACTGGAGGAAGAGGGATCCACAGGGACTGTTTGACATGGAGAACTTGGAACTGCTTGTCACGCTACCTGGTGGGGACAGTGTGAGAGGGTTCTTCATGGTCACTCTGCTAGTGGAGCTGGCTGCAGTGCCAGCCATTAAGAGTATTCCTTTGGTTATTAATGGGGTCCAGTGCGGTGATGCTGAGACTGTAACCAGAGCACTAGAGGAATTCAGCCAGGCCATACAGGGCATGACAGATGCACTTAAACTGATGCATGTGTATGTCAAACCAGAAGTCTTCTATGGCATTATGAGGATCTATCTGTCTGGGTGGAAAGACAACTCCTCCATGCCAGCTGGGTTGGTGTATGAGGGCGTCCAGGCAGAGCCTATGGAGTATTCTGGTGGGAGTGCTGCCCAGAGCAGTCTGCTGCACTGCTTTGATGAGCTGCTGGGTGTCAAACATGAAGCAAAGAGTGGTATCCTAAAGACGTCATTTCCAGTGAGGGTGAATGTGCTATCTACATGTACAGGTGCCTTTCTGACCCGTATGAGGAACTACATGCCCCCTTCCCACAAGCGTCTGATCCAGGACATCTCTCTGCAGCCCTCCCTGCGAGGCTTTGTCCAGCAGCAGGCCTGTGAGCCGCTAACCGCAGCCTTCCAGCTCTGTGTGACCAAGCTGCTTGCCCTCCGCAGCTACCACATCAACGTGGTCAGCCGCTTCATCACTGTGCCCGCTGCCCGTGCCCGACAGCTCCGAAACCAGGGGAACATTTCCCAGGAGGAGACTGTCAGCAGGGCGCCCACGGCACTGGAGGAGAAGGGCACCGGCGGCTCGGGCATCATGAGCTTCCTAAAGACTGTAAGGGACCGCACACGGACGTCTTTAATCTAAACTAGAATGTAAAATATGTATCGGATGACTAGTCCAGACCGACTGTGCTCATACCACAGTCCCCAATTCCTGCATGAGAGtcagacgccttgactttttctacattttggtaTGTTTAAGTATTATTCTAGAATTGATTAAATAGCCTTATGTTTTCA

Function

NR:

description
indoleamine 2,3-dioxygenase 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605946.2 False 1472 mRNA 0.53 10 27342945 27351871
XM_021605945.2 False 1532 mRNA 0.53 10 27342945 27351877
XM_021605947.2 False 1443 mRNA 0.53 9 27342945 27351884
XM_036979750.1 True 1330 mRNA 0.52 8 27342945 27351891

Neighbor

gene id symbol gene type direction distance location
LOC110525638 LOC106585585 coding downstream 64394 27270821 ~ 27278551 (-)
LOC110525021 nkx31 coding downstream 90568 27251058 ~ 27252377 (-)
LOC110525629 LOC106585566 coding downstream 454640 26883863 ~ 26888305 (-)
LOC118965120 NA coding downstream 465491 26877322 ~ 26877454 (-)
LOC110525627 LOC106585561 coding downstream 466902 26828158 ~ 26876043 (-)
LOC110525643 LOC106585590 coding upstream 193717 27545608 ~ 27560556 (-)
LOC110525644 LOC106585592 coding upstream 209666 27561557 ~ 27578521 (-)
LOC110525648 LOC106585594 coding upstream 300894 27652785 ~ 27705710 (-)
LOC110525649 LOC106585595 coding upstream 362240 27714131 ~ 27724003 (-)
LOC110525653 NA coding upstream 383104 27734995 ~ 27737024 (-)
G491603 NA non-coding downstream 22307 27320408 ~ 27320638 (-)
G491602 NA non-coding downstream 22584 27320129 ~ 27320361 (-)
G491598 NA non-coding downstream 25845 27316878 ~ 27317100 (-)
G491497 NA non-coding downstream 150587 27153706 ~ 27192358 (-)
G491492 NA non-coding downstream 197639 27144879 ~ 27145306 (-)
G492067 NA non-coding upstream 144286 27496177 ~ 27506760 (-)
G492122 NA non-coding upstream 249454 27601345 ~ 27601642 (-)
G492127 NA non-coding upstream 254794 27606685 ~ 27607004 (-)
G492145 NA non-coding upstream 275389 27627280 ~ 27627646 (-)
G492146 LOC106585319 non-coding upstream 276000 27627891 ~ 27628877 (-)
G491539 NA other downstream 98752 27216607 ~ 27244193 (-)
G491291 NA other downstream 475787 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 791318 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 885104 26455731 ~ 26457883 (-)
LOC110525606 LOC106585545 other downstream 1059776 26271759 ~ 26283169 (-)
LOC110525655 LOC106585601 other upstream 475340 27827231 ~ 27885634 (-)
G494389 LOC106585296 other upstream 2059324 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 2126764 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 2150362 29502192 ~ 29520980 (-)

Expression


Co-expression Network