LOC110525654 (LOC106585600)


Basic Information

Item Value
gene id LOC110525654
gene name LOC106585600
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 27798270 ~ 27812882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605975.2
ACAGCCGTTGCACCAATAAGGGAAGCCTGCTGAGGCTACTTGGATTCAATGGATTTAAAGGGGCGGGACCATCTGACTCATCAGATGAGGAACTGAGCTGAGCCTGGTGTAAAATAGCTGGTTTGCAAGAGAAGCGCTGACATGTGTGGAATCTTTGCCTATCTGAACTACCATGTGCCACGGACTCGCCGGGAGATCCTGGAGATCCTCCTCAAAGGCCTGCTTCGTCTGGAGTACCGTGGCTATGACTCTGCCGGTGTTGGAATTGATGGAGGGAACAGCAAGGAATGGGAGGCCAATGCCCGGTCTATTCAGCTGATCAAGCAGTCCGGAAAAGTGAAGGCTCTTGACGATGAGCTCACAAAGCAGCAGGACATGGACATGGATGTGGAGTTTGATGTCCACCTTGGCATCGCCCACACTCGCTGGGCTACCCATGGTGCCCCCAGCCCTGTCAACAGCCACCCACAAAGGTCTGACAAGAGCAACGagtTCATTGTCATTCATAATGGAATTATCACAAACTACAAAGACCTGCAGAAATTCCTGGAGAGCAAGGGTTATGAGTTTGAGTCTGAGACGGACACAGAGACCATTGCCAAGCTGGTAAAGTACATGTATGACAACCGTGAGAGTGAAGACCTCAGCTTTGCTACTCTGGTGGAGAGAGTGACCCAGCAGCTGGAAGGAGCGTTTGTCCTGGTCTTCAAGAGTGTCCATTACCCAGGAGAGGCTGTAGGCACCCGGAGGGGAGGTCCTCTGCTTATTGGGGTGAAAAGTGACCACAAGATGTCCACAGATCACATTCCTATCCTGTACCGATCATCTGGTAAGGACAAGAAGGGCTGTCCCACCCTGCCCAGGATGGAGCAGGACACCTGCCACACGCTCTTTGCTGAGGAAAAGAAGTCTGTGGAGTACTACTTTGCCTCTGATGCCAGCGCGGTGATTGAGCACACCAACCGTGTGATCTTCCTGGAGGATGATGACGTGGCAGCAGTGACGGCCGGACGGCTCACCATCCACCGCATCAAGCGTACAGCCGGAGACCACCCTGCCCGCGCCATCCAGACCCTGCAGATGGAGCTGCAGCAAATCATGAAGGGGAACTACAGCTCCTTTATGCAGAAGGAGATCTTTGAACAGCCAGAGTCTGTGGTCAACACCATGAGAGGAAGGGTCAACTTCAATGACAACACAGTAACCCTGGGTGGACTGAAGGATCACATTAAAGAGATCCAGAGGTGTCGACGGCTCATCCTCATCGCCTGTGGAACCAGCTACCATGCTGGGGTGGCGACTCGCCAGGTACTGGAGGAGTTGACAGAGCTGCCTGTTATGGTGGAGCTGGCCAGCGACTTCCTGGATAGAAACACACCAGTGTTCCGTGACGACGTCTGCTTCTTCATCAGCCAATCAGGCGAGACAGCAGACAGCCTGATGGCCCTGCGCTACTGTAAGGAGAGAGGAGCCCTGACGGTGGGCGTCACCAACACAGTGGGCAGCTCCATctccagagagacagactgtgggGTGCACATCAACGCTGGGCCAGAGATAGGAGTGGCCAGCACCAAGGCCTACACCAGTCAATTTGTGGCTCTGATCATGTTTGCGCTGTTGATGTGCGACGACAGGATTTCCATGCAGCCACGGCGACGTGAGATCATCCAGGGCCTGAGAGTTCTGCCAGATCTGATAAAGGAGGTGCTTAGTCTGGATGATGAGATCCAGAGGCTGGCAGCAGAGCTGTACCAGCAGAAGAGTGTTCTCATCATGGGCCGAGGCTACCACTATGCCACCTGCCTGGAGGGAGCACTGAAAATCAAGGAGATCACATACATGCACTCAGAGGGCATCCTGGCCGGGGAGCTGAAGCACGGGCCTCTGGCCCTAGTCGACAAACTCATGCCCGTCATCATGATCATCATGAGAGACCACACCTACACCAAGTGTCAGAATGCACTGCAGCAGGTGGTGGCCCGCGCGGGCCGACCCATCGTGATCTGTGACAAAGATGACTACGAGACTGCCAAGAGCTCGAGCCGCACCATCAAAGTGCCACACTGTGTGGACTGTCTGCAGGGCATCCTGAGTGTCATCCCCCTGCagctcctctccttccacctggCTGTGCTCAGGGGCTTTGACGTGGATTGCCCAAGGAACCTGGCCAAGTCTGTGACTGTAGAGTGAAACGCGTCCTTTTGAAGATCCAAAAACCCATTTCAGAAACGTTCCTGTTTTGTGTGCGTCATGGCTCTTTTTAATGCAATTGTTACTCTGGTACACTAAACATGTACTGTATCTGTCTCTTTTCTCAAAACACACATCTGAAGACATTGTTATATcatagatattttttttttttttttgggggggggggggtcagtggtGGGATACTTGCTGCTGgttttacatttaattcagctGTTGTCAAGAGTCTGCACATGACAATCTTACTGAAGTTACTGGTTCTTTTGGTGTTTCATTGGTGCAATAATTTGGTCTGTTGAGATCTGTTTTCTTTGGCAGCTAGAGAAACATCTGTCGTTTGAAATGTTTATCTGTTACTCTTGTGTGTGTTGAGTAAATtattaaaggggcagtgcagttaagtcactactttttttttttttttaacacaggtAGAAATGACACATTGTGAAAATGAAAACACCCTTTTTGGGAAATAATGCCTGGAATTTCAGCTTGTACAAGTGCGCTGGAACCTTTTACCCACATGATCTGATTGATAATAGAGCAATTACTGTTTATCTGGGTAAGGGGTGGGCTCTAGACCAGCCAATCAGATATATACATGCCCACACGATCAGACTTAGCATTTCAAGGGCCAATGGAGGCTCAGGGATGTAAATGATAAATGTGATTTTCATTAAGTACATTGTCTAATAAATCAGTGATTGATTTAAAGCATGGGTGCTTTAAATGTTTGAGCTATA

Function

NR:

description
glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1-like

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0030246 carbohydrate binding molecular_function
GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity molecular_function

KEGG:

id description
K00820 glmS, GFPT; glutamine---fructose-6-phosphate transaminase (isomerizing)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605975.2 True 2963 mRNA 0.50 19 27798270 27812882

Neighbor

gene id symbol gene type direction distance location
LOC110525653 NA coding downstream 61246 27734995 ~ 27737024 (-)
LOC110525649 LOC106585595 coding downstream 74267 27714131 ~ 27724003 (-)
LOC110525648 LOC106585594 coding downstream 92560 27652785 ~ 27705710 (-)
LOC110525644 LOC106585592 coding downstream 219749 27561557 ~ 27578521 (-)
LOC110525643 LOC106585590 coding downstream 237714 27545608 ~ 27560556 (-)
LOC118965072 LOC106579843 coding upstream 4694 27817576 ~ 27820202 (-)
LOC110525655 LOC106585601 coding upstream 19370 27827231 ~ 27885634 (-)
LOC110525658 LOC100195761 coding upstream 215294 28028176 ~ 28044300 (-)
LOC110525659 LOC106585607 coding upstream 231923 28044805 ~ 28105169 (-)
LOC110525660 pdli2 coding upstream 298086 28110968 ~ 28180720 (-)
G492208 NA non-coding downstream 4524 27791875 ~ 27793746 (-)
G492207 NA non-coding downstream 21323 27776556 ~ 27776947 (-)
G492235 NA non-coding downstream 22465 27775598 ~ 27775805 (-)
G492229 NA non-coding downstream 27463 27770598 ~ 27770807 (-)
G492195 NA non-coding downstream 68979 27729057 ~ 27729291 (-)
G492279 NA non-coding upstream 79986 27892868 ~ 27893100 (-)
G492284 NA non-coding upstream 83400 27896282 ~ 27896518 (-)
G492289 NA non-coding upstream 96684 27909566 ~ 27909770 (-)
G492295 NA non-coding upstream 101393 27914275 ~ 27914474 (-)
G491539 NA other downstream 554077 27216607 ~ 27244193 (-)
G491291 NA other downstream 931112 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1246643 26481087 ~ 26551627 (-)
tmem230b LOC106585554 other downstream 1340429 26455731 ~ 26457883 (-)
G494389 LOC106585296 other upstream 1598333 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1665773 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1689371 29502192 ~ 29520980 (-)
G494542 NA other upstream 1862441 29675323 ~ 29675573 (-)

Expression


Co-expression Network