LOC110525660 (pdli2)


Basic Information

Item Value
gene id LOC110525660
gene name pdli2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28110968 ~ 28180720 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979773.1
ACTGAGCTCATTCCTCAGAGCGGGTGTCCACAGGTGATTTCATATTGGTTCTTTATCCAATAGTCCCCAGCAATAGAAGTGCAGTTCAGGTGTCCAGAGCATTTGATCTAATAATATAGCAGCACGAATCGCTATTAGAGGCGTATGAGATTTCTGTGGGCGTTTTGGGAACAGAAAGAAGGAAACATTAACTTCATTCTGCTGTATTTTTGGAAGCGACTCGCGCGCAGGGGGTGGAGTGTTTCTGGTCCTGCGCTCTTTTCGGGTATTTTGGTGGTGTCGCCTATGAGTTTTTCACTTGAGATATTCTTCAGGAGAGCACCGTTGTTGGATCTGCAGGTGTACAGACACAATTCGACTATTACTGATTGCTGATCAACTGCCTTGATTTAGGGTTTGAGCAGGCAGTGGGTGGCGACCTCTGGTCACGTGATGGCGCTGACAGTAAACCTGATTGGTCCGTCTCCATGGGGCTTTAGAATATACGGAGGAAGAGACTTCAAGAAGGTGATAACAGTTTCCAAGGTCAATGGGGGCAGCAAGGCCGAGTTGGCCGCCCTGCAGCCTGGTGATGTCATCCTGGAGATCAATGGAGAGAACACAGTGGACATGCTCAATGTGGAGGCCCAGAACAAGATCAAAAACTCCAAAACTCAGCTGCAGATGCTGGTGGAGAGGCCTGAGCCCCCCATCCCTGAACAGACCAATGGAACCACCACCCCAGAACAGCTCACTGGACGCTTCCAGGAGGCGGTGCTGGTGAGTCGAGATGAGAACCAGAACTACAGAGGGTACTCCATctccagcccagcctctctgtcaCCTGGACTCTACTCCCCAGAGGCCCCGTCCAGtcctgagggaaagagagagaggctcaCACCCACCGGCACCAAGAGCATCCAGCTGCGTTCGTGGTCTCCAGAAGAGAAGACATCGAGTCACAGACTGTCCAGACCACTGTCACAGGAGTTCTCTTCTCCGGACTTCAGGAATAACTCTGTGACCAGCCGAACCCCCACCCCTCCAGGACATTACTCGCCCCACAGCCCTATTGAGCGCGAGCTGTCTGTCTCCCCCAGACGCAGTTCTGGCTCGGACTTTGCCATGCAGCGGTTTGACCGGGATTCAGAGGTCTacaagatgatccaggagaacaAGGAGTCTCGCACGGCCCCTCGACAGTCCAACACCTTCCGCATGCTGCAGGAGGTTCTGGAGTCTGATGAGAAGGAGGCAACTGTGCGGTTCCCAGGACTCTCGCCCAAACCCACCCCTCCCAAACCCACATCACCCGGGGGCGGAGTCCCCAAGTACCACACCTGTGAGAAGTGTGGCACCAGCATTGTTACACAGGCGGTGCGCATCATGGACGACCGCTTCCGCCACCCAGAGTGCTACACCTGTTCTACACCAGAGTGCGGACTCAACCTGAAGATGCGAGGTCACTTCTGGGTGGGAGAGGAGATGTTCTGTGAGAAGCATGCCCGCGAGAATTACCAGGGCCTTGGCACTGCCCCCTGTGCCACCGTCTCACCCCGCCACTGAGGCTCTAAGCAATAGACCATGGGCTGGGGAACGGGAGTGGGAGTGCCAACACATCAGAGGTTGTGCCTTTTCTATAGCATTTAACTATTCTCTCCAGTTTTCTAATTCATTTACTATGAGGTTTGGATGGAACTTTTCTTTTCCCAGGCCCTCCCGGTTTAGCCCTTATAGATGTATTGTTATCGCTAATGTACAGCTGTatcgggcggcaggtagcctagtggttagagcgttggattagtaaccgaaaggttgcaagatcgaatccctgagctgacaaggtaaaaaactattgttctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaatagatataataatataacatctCATTCAGACAACTTAGTGGGCTACTACACCTGCCACATTTACACCAACTTATTACAAAACAGAACTGGTATATGAATCAGATCAATGACAGAGCGTAACATTTTAATCCTTTAAACAGCATTGAGTCTCCTCCTGACCTGTTCGGAGGAAGGGAAATAAACTCTTCATTTGAATTCCAAGGCATTTGAAAGACAGAAGacatacatatgcaaagggagaACTTTCATCTGTGTCCAAATTTGTACTATATTTGTggttgtgtgcatttgtgtgtgtgcttgcgtgcgtgtgtttgtggaATTCAACTTGAGCGAGAGTTTTGATCATTCCTTTTGAAGTGATGGTTTAAGTGCCTGCGTTGCTGCCATTTCCCCCTGCTATTGGGATCACTATTGAAAGGTTTCAGTGGATTCAGCTTTAGAATGTCAGGCCGAGCCTGTTGGGTTTGTTTTTGCCTCGTGGTAGCACATCAGTTTAGTTGGAATTATGAAATGCGTATTTGCTTTATTGCTTTTTAAAATTTGAAATAAGGGAATATAAAGATGtgatatataaataaaaacatttttgtgaatgtttattttATAGAACAATATATAGTACCGTATCATATGACATGTGTAGGCACAGGGCTGCATGACTTGTAGTACTATTTTAGTGTGAAGAGGTTTGCTGATGCTATTGCTGTATGTTTCTTCACAGCAGCACCCACAGAAAGACAGTGTCACACTTCATAAAAACACATCAATGTTTTTGAAAAATATGTAAGGATAAAACTACATGTATCTTGCTTGGCCTTTTGTATAGTTAGCTATGCAATTGTACCATCAACAGCTTATGTTGTTGAAAATTATGTCATGTAGGCTAAACCTTCCAGCTCCCTGGACAATAAACACCATGTGGACCCCTTCTCATCCTGTAGATCATCCTATAGATGGGTACATTTGGCCTACTGGTCCCACCTCTGTCTATCTACCTGGGAAATCATTGTGGACACACAGTCAGGTTAATTTGTACTATAACCTGGCTGTACTGGGAACAACATTCAGAATTTATAAAACGAGCTTGGAAGTAGGTCTTCTATTCCCTGTAAATTGGTGATGAGCAGATTTTTTTCTGCATTATGTTTTGTAAGAATAAATTGTATCTTTGATGCTCTTGAAATTGG
>XM_036979772.1
CACTGAGCTCATTCCTCAGAGCGGGTGTCCACAGGTGATTTCATATTGGTTCTTTATCCAATAGTCCCCAGCAATAGAAGTGCAGTTCAGGTGTCCAGAGCATTTGATCTAATAATATAGCAGCACGAATCGCTATTAGAGGCGTATGAGATTTCTGTGGGCGTTTTGGGAACAGAAAGAAGGAAACATTAACTTCATTCTGCTGTATTTTTGGAAGCGACTCGCGCGCAGGGGGTGGAGTGTTTCTGGTCCTGCGCTCTTTTCGGGTATTTTGGTGGTGTCGCCTATGAGTTTTTCACTTGAGATATTCTTCAGGAGAGCACCGTTGTTGGATCTGCAGGTGTACAGACACAATTCGACTATTACTGATTGCTGATCAACTGCCTTGATTTAGGTGAAACCCGAGGCACGGATACATTCATTAAATTCTTCCACTCTTCACCTCGAGCTGGGCAGAACAATTTACACATTTATTCAAAAACAAACATTGGAATGCAAGATGTGCCAGGCTTTACTCCAACTTAAATGGATGCTTCGTCCTCCTGGACGTTTTGTGGGTTTGAGCAGGCAGTGGGTGGCGACCTCTGGTCACGTGATGGCGCTGACAGTAAACCTGATTGGTCCGTCTCCATGGGGCTTTAGAATATACGGAGGAAGAGACTTCAAGAAGGTGATAACAGTTTCCAAGGTCAATGGGGGCAGCAAGGCCGAGTTGGCCGCCCTGCAGCCTGGTGATGTCATCCTGGAGATCAATGGAGAGAACACAGTGGACATGCTCAATGTGGAGGCCCAGAACAAGATCAAAAACTCCAAAACTCAGCTGCAGATGCTGGTGGAGAGGCCTGAGCCCCCCATCCCTGAACAGACCAATGGAACCACCACCCCAGAACAGCTCACTGGACGCTTCCAGGAGGCGGTGCTGGTGAGTCGAGATGAGAACCAGAACTACAGAGGGTACTCCATctccagcccagcctctctgtcaCCTGGACTCTACTCCCCAGAGGCCCCGTCCAGtcctgagggaaagagagagaggctcaCACCCACCGGCACCAAGAGCATCCAGCTGCGTTCGTGGTCTCCAGAAGAGAAGACATCGAGTCACAGACTGTCCAGACCACTGTCACAGGAGTTCTCTTCTCCGGACTTCAGGAATAACTCTGTGACCAGCCGAACCCCCACCCCTCCAGGACATTACTCGCCCCACAGCCCTATTGAGCGCGAGCTGTCTGTCTCCCCCAGACGCAGTTCTGGCTCGGACTTTGCCATGCAGCGGTTTGACCGGGATTCAGAGGTCTacaagatgatccaggagaacaAGGAGTCTCGCACGGCCCCTCGACAGTCCAACACCTTCCGCATGCTGCAGGAGGTTCTGGAGTCTGATGAGAAGGAGGCAACTGTGCGGTTCCCAGGACTCTCGCCCAAACCCACCCCTCCCAAACCCACATCACCCGGGGGCGGAGTCCCCAAGTACCACACCTGTGAGAAGTGTGGCACCAGCATTGTTACACAGGCGGTGCGCATCATGGACGACCGCTTCCGCCACCCAGAGTGCTACACCTGTTCTACACCAGAGTGCGGACTCAACCTGAAGATGCGAGGTCACTTCTGGGTGGGAGAGGAGATGTTCTGTGAGAAGCATGCCCGCGAGAATTACCAGGGCCTTGGCACTGCCCCCTGTGCCACCGTCTCACCCCGCCACTGAGGCTCTAAGCAATAGACCATGGGCTGGGGAACGGGAGTGGGAGTGCCAACACATCAGAGGTTGTGCCTTTTCTATAGCATTTAACTATTCTCTCCAGTTTTCTAATTCATTTACTATGAGGTTTGGATGGAACTTTTCTTTTCCCAGGCCCTCCCGGTTTAGCCCTTATAGATGTATTGTTATCGCTAATGTACAGCTGTatcgggcggcaggtagcctagtggttagagcgttggattagtaaccgaaaggttgcaagatcgaatccctgagctgacaaggtaaaaaactattgttctgcccctgaacaggcagttaacccactaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggttaaaaaaatagatataataatataacatctCATTCAGACAACTTAGTGGGCTACTACACCTGCCACATTTACACCAACTTATTACAAAACAGAACTGGTATATGAATCAGATCAATGACAGAGCGTAACATTTTAATCCTTTAAACAGCATTGAGTCTCCTCCTGACCTGTTCGGAGGAAGGGAAATAAACTCTTCATTTGAATTCCAAGGCATTTGAAAGACAGAAGacatacatatgcaaagggagaACTTTCATCTGTGTCCAAATTTGTACTATATTTGTggttgtgtgcatttgtgtgtgtgcttgcgtgcgtgtgtttgtggaATTCAACTTGAGCGAGAGTTTTGATCATTCCTTTTGAAGTGATGGTTTAAGTGCCTGCGTTGCTGCCATTTCCCCCTGCTATTGGGATCACTATTGAAAGGTTTCAGTGGATTCAGCTTTAGAATGTCAGGCCGAGCCTGTTGGGTTTGTTTTTGCCTCGTGGTAGCACATCAGTTTAGTTGGAATTATGAAATGCGTATTTGCTTTATTGCTTTTTAAAATTTGAAATAAGGGAATATAAAGATGtgatatataaataaaaacatttttgtgaatgtttattttATAGAACAATATATAGTACCGTATCATATGACATGTGTAGGCACAGGGCTGCATGACTTGTAGTACTATTTTAGTGTGAAGAGGTTTGCTGATGCTATTGCTGTATGTTTCTTCACAGCAGCACCCACAGAAAGACAGTGTCACACTTCATAAAAACACATCAATGTTTTTGAAAAATATGTAAGGATAAAACTACATGTATCTTGCTTGGCCTTTTGTATAGTTAGCTATGCAATTGTACCATCAACAGCTTATGTTGTTGAAAATTATGTCATGTAGGCTAAACCTTCCAGCTCCCTGGACAATAAACACCATGTGGACCCCTTCTCATCCTGTAGATCATCCTATAGATGGGTACATTTGGCCTACTGGTCCCACCTCTGTCTATCTACCTGGGAAATCATTGTGGACACACAGTCAGGTTAATTTGTACTATAACCTGGCTGTACTGGGAACAACATTCAGAATTTATAAAACGAGCTTGGAAGTAGGTCTTCTATTCCCTGTAAATTGGTGATGAGCAGATTTTTTTCTGCATTATGTTTTGTAAGAATAAATTGTATCTTTGATGCTCTTGAAATTGG

Function

NR:

description
PDZ and LIM domain protein 2-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979773.1 False 3129 mRNA 0.47 10 28110968 28180719
XM_036979772.1 True 3292 mRNA 0.46 11 28110968 28180720

Neighbor

gene id symbol gene type direction distance location
LOC110525659 LOC106585607 coding downstream 5799 28044805 ~ 28105169 (-)
LOC110525658 LOC100195761 coding downstream 66668 28028176 ~ 28044300 (-)
LOC110525655 LOC106585601 coding downstream 243688 27827231 ~ 27885634 (-)
LOC118965072 LOC106579843 coding downstream 290766 27817576 ~ 27820202 (-)
LOC110525654 LOC106585600 coding downstream 298086 27798270 ~ 27812882 (-)
LOC110525662 LOC106585608 coding upstream 12788 28193508 ~ 28247237 (-)
LOC110525663 lincr coding upstream 75768 28256488 ~ 28259851 (-)
LOC118964856 NA coding upstream 86097 28266817 ~ 28273722 (-)
LOC110525665 LOC106585609 coding upstream 95943 28276663 ~ 28309727 (-)
LOC110525666 LOC106585610 coding upstream 132593 28313313 ~ 28352749 (-)
G492527 NA non-coding downstream 41933 28068755 ~ 28069035 (-)
G492526 NA non-coding downstream 44222 28066537 ~ 28066746 (-)
G492298 NA non-coding downstream 195233 27915507 ~ 27915735 (-)
G492297 NA non-coding downstream 195671 27915047 ~ 27915297 (-)
G492295 NA non-coding downstream 196494 27914275 ~ 27914474 (-)
G492594 NA non-coding upstream 776 28181496 ~ 28181863 (-)
G492596 NA non-coding upstream 4850 28185570 ~ 28185808 (-)
G492960 NA non-coding upstream 196247 28376967 ~ 28377231 (-)
LOC110525653 NA other downstream 373990 27734995 ~ 27737024 (-)
G491539 NA other downstream 866775 27216607 ~ 27244193 (-)
G491291 NA other downstream 1243810 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1559341 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1230495 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1297935 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1321533 29502192 ~ 29520980 (-)
G494542 NA other upstream 1494603 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2345966 30526034 ~ 30527686 (-)

Expression


Co-expression Network