LOC110525663 (lincr)


Basic Information

Item Value
gene id LOC110525663
gene name lincr
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28256488 ~ 28259851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605995.2
AGAACTACTCAAACTACTGTAGGTGTACTATGTGGCTATGCATTACAATACAGAGGATACGAAGAGCAACATGTATCAGATGGTCAGCAGAAGCCTTGAGCCTGAGCCAGCACACGTTTGTGGACCCCGCTGCCTGGGCCCCTTGACCTTCCATAGGGAGGCGGTGGGGGCTTTGGTAAGCCTGAGCCAGGGAGCTAGACGGGCAGACAGGACTGGGGACACCTTCAGACATGGCCTGGTGTTCAGCAGCCGCCCAGTACAGCCCCAGGAGAGGGTGTGTCTGCGAGTGGAGCGGTGTGGGCTGAACTGGTGTGGAGCCATGCGTATAGGCTTCACCACTGTACCTCCAATTGCCAGAGACTTGCCCTCCATGGCCATCCCAGACCTCACAGACACCCCTGGACACTGGGCCGCTCCTGTGCCTGAGATGTGCTGCCTTGCAGGCTCAGAGCTGGAGTTCTGGGTCTCCTATGGCGGTACATTGTATTTCAGGAATGCCAACGGCCGACAACACAAACTGCTGGAGGGAGTAGACCTCAGCTGGCCCCTGTGGGCCATGATTGATGTGTATGGGCAGACCTGCTCTGTGCTCTTACTGGGTTCGGAGAAGAAATACTTTTTGTGTAATCGAAAATCCTGTCCTGCTCCTCAACGGCATTCCTCCTGTTCTGCTCATCAGAGACATGCCTCGCTCAACGTAGACAAATATGTGAATGTGAAGCAAATGTGTGATGACAGCCATGACAGATATCCTCTTCCATGTCCAGCCAATAAGCAGACATCAAACTGTGAGAGTGTAGAGGACTGCGCAGTGTGTATGAGCCAGAAGGCCTGTATCAGCCTGCGGTGTGGCCACCAGTGCCTGTGTCTCCAGTGTGCCACCAGAGTGATCCAAGAGTTTGGAACCTGCCCTCTGTGTCGCCAGAACATCAAGAACTAAACACCACCAGGCACAGACCATCACATGACAAACTGATATGATGATATGATCAAATGCTGTTGAGGTACAACCAAAATAAGACTGAGAAGAGGAAGAAATGAAAATGCACAATCTACTGAAAAGATAATGAATGTGACCTGCCAGATATGCTGCTATTGGCATAAATTGCACAAAAAGACTTGAATGTGCAAAGCTATATTTTTTTGTACATGTACTTTACTTGACTGTGGTCTATTACTATAAGAGTGACTTCCTGTGCTGATAACTATTCTGTTTGATATATAACTGTTTTAGGACCATATATCAATCGCTGACTTTTACCCATACTGTCTACTTTTTGTATCTGTTATTTAAGACATGTTGTCTGTTGTAGAAATATATATGTGTTTTTATATGTGTAATAAAATCCATGAACATAACTGCT
>TU560076
TGTAGGTTCGGAGAAGAAATACTTTTTGTGTAATCGAAAATCCTGTCCTGCTCCTCAACGGCATTCCTCCTGTTCTGCTCATCAGAGACATGCCTCGCTCAACGTAGACAAATATGTGAATGTGAAGCAAATGTGTGATGACAGCCATGACAGATATCCTCTTCCATGTCCAGCCAATAAGCAGACATCAAACTGTGAGAGTGTAGAGGACTGCGCAGTGTGTATGAGCCAGAAGGCCTGTATCAGCCTGCGGTGTGGCCACCAGTGCCTGTGTCTCCAGTGTGCCACCAGAGTGATCCAAGAGTTTGGAACCTGCCCTCTGTGTCGCCAGAACATCAAGAACTAAACACCACCAGGCACAGACCATCACATGACAAACTGATATGATGATATGATCAAATGCTGTTGAGGTACAACCAAAATAAGACTGAGAAGAGGAAGAAATGAAAATGCACAATCTACTGAAAAGATAATGAATGTGACCTGCCAGATATGCTGCTATTGGCATAAATTGCACAAAAAGACTTGAATGTGCA

Function

symbol description
lincr E3 ubiquitin-protein ligase NEURL3

NR:

description
E3 ubiquitin-protein ligase NEURL3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605995.2 False 1364 mRNA 0.48 4 28256488 28259851
TU560076 True 536 lncRNA 0.45 2 28256722 28257634

Neighbor

gene id symbol gene type direction distance location
LOC110525662 LOC106585608 coding downstream 9251 28193508 ~ 28247237 (-)
LOC110525660 pdli2 coding downstream 75768 28110968 ~ 28180720 (-)
LOC110525659 LOC106585607 coding downstream 151319 28044805 ~ 28105169 (-)
LOC110525658 LOC100195761 coding downstream 212188 28028176 ~ 28044300 (-)
LOC110525655 LOC106585601 coding downstream 389208 27827231 ~ 27885634 (-)
LOC118964856 NA coding upstream 6966 28266817 ~ 28273722 (-)
LOC110525665 LOC106585609 coding upstream 16812 28276663 ~ 28309727 (-)
LOC110525666 LOC106585610 coding upstream 53462 28313313 ~ 28352749 (-)
LOC110525668 LOC106585611 coding upstream 96187 28356038 ~ 28370016 (-)
LOC110525671 sld5 coding upstream 143233 28403084 ~ 28414473 (-)
G492596 NA non-coding downstream 70680 28185570 ~ 28185808 (-)
G492594 NA non-coding downstream 74625 28181496 ~ 28181863 (-)
G492569 NA non-coding downstream 103420 28151359 ~ 28153068 (-)
G492556 NA non-coding downstream 127250 28128345 ~ 28129238 (-)
G492527 NA non-coding downstream 187453 28068755 ~ 28069035 (-)
G492960 NA non-coding upstream 117116 28376967 ~ 28377231 (-)
G492963 NA non-coding upstream 119809 28379660 ~ 28379912 (-)
G492902 LOC106585347 non-coding upstream 142017 28401868 ~ 28402253 (-)
G492979 NA non-coding upstream 146193 28406044 ~ 28406324 (-)
LOC110525653 NA other downstream 519510 27734995 ~ 27737024 (-)
G491539 NA other downstream 1012295 27216607 ~ 27244193 (-)
G491291 NA other downstream 1389330 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1704861 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1151364 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1218804 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1242402 29502192 ~ 29520980 (-)
G494542 NA other upstream 1415472 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2266835 30526034 ~ 30527686 (-)

Expression


Co-expression Network