LOC118964856


Basic Information

Item Value
gene id LOC118964856
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28266817 ~ 28273722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052050.1
gagtgtgtagtgtatGTTCTGTAGGTTTACAGGATTATATCGAGGGGGTCTCTGAAATAGCGATCACAGGCCGTAATCTTGTCCAGCTCTCGGGCCTTATTCGCCATAGGCCAGGCTGGCCCAGTGGAGTGCTGTTGGGATATGAACTAAGATGAAGTGCCTCTGTGGACAAACTGCATCCTTTGTCCATAACGTAGCTGGGCCATCTATGTCTATAGAATCCTCTCTACTGTTGCTGTGTGTGGCTACACTAAGCCCAATGTGGGTCCTCTTTTCATTCATTACCAGACAGATTGCCGCCCAGAGAGACATTCATTGTGCAGGGCAGTGTATTGGCATTTTTACGGCTGTGATATTGTTTTGCTGCCATTTCTATGACTTTTTCATATGATGGTTTTCTCCTTAAAGAGGATTCCTCTTCAGAAGGTTCTAACAGTGATAAAAGCCATGGTTCAGAAGGACTTACGGCTGTCAATTAGCTTTTCAATGAGGGGACAGCATACCAAAGCATATAATATGTGATTCTCTGGTCTGCCATGGCTATCCTGGTTCCGTCTATGAATCCAGCAGGATTTCACCCAATTTGGACTTGTATCTTCTTTTGTTTTTTAGGAACTCCTTTAGCAATCTGATATCATTAATTTACACATTGAAACAATTTATAGATAATTTCTAGATGTTACTGTATGTTTTCCTTGTGGATGGTAAATAGAGTAAACTTTTCTCCCATTATCTAAGCCAGTGTCTATCCAACATTGGTCATCACCATCACACACTCCCACTCCGCTATCCGTACCAGAGGATAAACAGAGCAGCTCCTACCCAGTCACGGCACCCAGCCTCTCCCTGAATTGCATGCAGTCAGTCAGTTTCCACCCAACCAAGTCTCTCACATTCTATTCTCCTCTCACTCCAAGTTATTGATTGCCATGAGTTGGGTGACATCATCACAGATTTGATCATCAGCCTTATGGATTTTTTTGACAGACAATTTGCCTTGTCCTGTGCTTGGCCATACGTCTCGCCATCCATACCCCAAAATGTACACCGGGACAGGGTATTTTCTGGGAGTCCTCTCTTCAGTGATGGATCGTTGGAATAGGATTGCTGGATGGAATAGGACCAATGTAAAGACAATCGACTATGTGACTGTGGGactgctgatgtttaggccatgGTCTTGTCAGGGAGGGACCAGCTCTCACCCAATGGGAGGAAGGAGACATGTgaggacacacacatatacacactctgGCACTCTGCCAAGTAAATACCCTGACTTCAGCTGGTTAAATGGTTTTAAAGTGTCAAGGGTTTATAATTAAGTATTGACTTTCATTCCGTCTGACATCCCTGAATGGAATATTCATGCATGCTTTTAATTTGTATGTTAGTAGTCTTTTATTTTCCTTATTtattgtctgactgttttaactGTTTACCATCAACATAAGCATGCTAAAAGCAAACACTCACAAATACATTAAACAAAAGCTGCTACAGTATTTCAATGCACCGTCAGCATGTTTGTCAGAACAGAGCAGTAGTGTACATTTCTCTGTGCATTATTATGTTGTGCAGTCTTTTGTTGGAAATATACATTTCACCAGTATGTACATACTATCCCAGCTCATCCTTGGAACAGTGAACTCCAACAAAACGCTCCATTTGCCCCCTAATGCCACGCTGAGGTCATTTTTCCTAACCTACTATCTCAATGGTGTTATAAACTCAGCTTAAATCAATAAAATGATGTAAAAGACCAGTGGGCCAGATTCAGGCTGGGAGCCCATAAGGTCAGTATGAAATGTGAAAATGCGCCTTCCTTTCCCATCAGACCTCTGCCTTGGATTCCCTCAGCCTCTAAAGTGTAGCATCTACATGCTGCTGAATACTGATGATCACAGCTCTGCCTGCCTGCTACTACACTCTGCTGGGTATACTCTCTGGTGGCTTGTATGTTGACATATTATGGGGTGGGCCTATGTAATGTACAAACATATGGTTCAACTGTAAGGTTAGTCTACTCTATCGGACATCAGAGCAGACATGGGTGGCTAAATGTTGTGTCAGCTTCTGTGAATATTCAATTAAATGGAAATGTTCCACATTCAGACAATATCAGCACATAAATACTTATAAGTATTTATAAGGACATCATGATTTATGTAGTCTATTTTCCTTTCTGATGCGTATTGCCGGTGGTACAGTAGGTAGTTACATTCTTGTTACCATGAAGTGCTTTATTCCACAAACTATGACTGGGTCCTTTAAAGTTGCTCCTAAGAGATTCATAAAtatgttttcatttgtttttagagAATTGAAGAGTGTGCTAATAGAGATTTCTCTTGTTCAGGGGAGCTGACACAATGTTATTCTGTTTTTAATAATGCATCCATTGTTTTACAAGGCAGCATCTTCTGGACTGTTTCAGTTACTGTGATCAGTTTGACTGTTTTACCAAACAATAACTTGTTTACTATCCCCCTCTTTAATTTGAATGTGGATGTGTCTTGAATGGATGTTTGATACCACCTTCACACATACGCACATCCATGCACATCCATGCACATCCATGCACACGTTCACGCAGGCGAAGTTTGAACAATTTGAAGCTTGACACCTACTTATTATTTTGGTTGCAGTTATTTTATTGAGTATATCTATTTTACTATGTTTTATGTTTATTTGTGCTGTAGCAACCTCTTCAGATCTTTGTTCATTGTCCATGTTCTGTTTTGTAGGAAATGGTGGCTAGTTTGCATCATTTTGCTTTGATAAGGACTATTTCAAAGACATTTAAAATATAATCATGGATTTCTTATTGATTAATAGTTGTATCAAATATTCAGAATGCACTTAAATGTTCAATGCCTCTTAATGAAGTTATTCAAATGTTGTACTCTTATTTTAAGGTAGAAAATGCATAATTTGTCATCAATCTTCCTCTGTAGTATGTGTTGATTGACTGACACTCAATCTGCTGTTAAGTAATTATGGACTGATATGACAAGGATTCATTAGTTCAAATGTATAGATAGATTATCCTTGTAATCTGGACCCTGTCAAATGTCCTTAATTAGTTTACAATCAATAATGTATGGGTCTGCGTGGAAAGTGCAAGGCCCACTCAATAATATACCTATACTAGTTGATTCATGGTATTGTCAACATATTGTAATGCCCTCCATGGATTGCTCTTGGTTTAGAGTTCAACATGAGGCCAGTAGTATTGTTAGATGGAGTGGACTAATGCTGTTTGTTAAATTTTCTGGttgaacacaaaaaaaacactacattCATGTAATGCTTCCAGTTTTGTAAATAAATGTTGACCACTGCAATTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052050.1 True 3352 mRNA 0.39 2 28266817 28273722

Neighbor

gene id symbol gene type direction distance location
LOC110525663 lincr coding downstream 6966 28256488 ~ 28259851 (-)
LOC110525662 LOC106585608 coding downstream 19580 28193508 ~ 28247237 (-)
LOC110525660 pdli2 coding downstream 86097 28110968 ~ 28180720 (-)
LOC110525659 LOC106585607 coding downstream 161648 28044805 ~ 28105169 (-)
LOC110525658 LOC100195761 coding downstream 222517 28028176 ~ 28044300 (-)
LOC110525665 LOC106585609 coding upstream 2941 28276663 ~ 28309727 (-)
LOC110525666 LOC106585610 coding upstream 39591 28313313 ~ 28352749 (-)
LOC110525668 LOC106585611 coding upstream 82316 28356038 ~ 28370016 (-)
LOC110525671 sld5 coding upstream 129362 28403084 ~ 28414473 (-)
arid5a LOC106585613 coding upstream 141015 28414737 ~ 28425225 (-)
G492596 NA non-coding downstream 81009 28185570 ~ 28185808 (-)
G492594 NA non-coding downstream 84954 28181496 ~ 28181863 (-)
G492569 NA non-coding downstream 113749 28151359 ~ 28153068 (-)
G492556 NA non-coding downstream 137579 28128345 ~ 28129238 (-)
G492960 NA non-coding upstream 103245 28376967 ~ 28377231 (-)
G492963 NA non-coding upstream 105938 28379660 ~ 28379912 (-)
G492902 LOC106585347 non-coding upstream 128146 28401868 ~ 28402253 (-)
G492979 NA non-coding upstream 132322 28406044 ~ 28406324 (-)
LOC110525655 LOC106585601 other downstream 431515 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 529839 27734995 ~ 27737024 (-)
G491539 NA other downstream 1022624 27216607 ~ 27244193 (-)
G491291 NA other downstream 1399659 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1715190 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1137493 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1204933 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1228531 29502192 ~ 29520980 (-)
G494542 NA other upstream 1401601 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2252964 30526034 ~ 30527686 (-)

Expression


Co-expression Network