LOC110525666 (LOC106585610)


Basic Information

Item Value
gene id LOC110525666
gene name LOC106585610
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28313313 ~ 28352749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979776.1
AGTACCCAGCCATGCTTCAGTGTTTCCACGTCCCACCACCAGGTGTCAGTTTAGAGACACTGAGGGAGGTGTTTTTGTTCTTGCTGATAAACACGAGACACCAAAACCAACGAGATTATCGCAGGAACATCTGATGTGCAGCATCATAGTTCGTCCAGAAATACTTTCATCACGTTGCATCCACGCAACTATCCGATAGCCACCGGGTGGAGACAACAATGTGAGAGGTCCGAAACAAAGCCCGATACAAAGACGGCTAACATCGTTGCTGATCGGACAACCTTGGGTACCATGGGCCACACATAGGATTGAAAGAGGagccaaggacaacaaccatctcTTGTACAAGCCTTACTCTAATGCCATCATCGCCAAGGAGCCCACCTCCCTGGAGGAGGAGATAAAGGAGATCCGGCGCAGTGGCAGTAACCGGGACCTGGACCATGCCTCCGAGTTTGAGATGTCCGACATCTTCTACTTCTGCCGGCAAGGAGTTGAGAGCATCATGGACGACGAGGTGACCAAGAGGTTTTCTGCTGAGGAGCTGGAGTCATGGAACCTGCTGACCCGTAGCAACTACAACTTCCAGCACATCAGTCTGAGGCTGACTGTCCTGTGGGGGCTGGGGGTGGTGATCCGCTACGGCTTCCTTCTGCCTCTCAGGGTAACTCTTGCCTTCACCGGGGTGGGTCTTCTGGTCGTACTCACCTCCATCATCGGGTTTCTTCCAAATGGGAGGATGAAGAACTTCCTCAGTGAGCAGGTGCATCTGATGTGTTACCGGATCTGTGTAAGAGCTCTCACTGCCATCATCACCTACCACGACAGTGAAAACAAGCCCAAGAATGGAGGGATCTGTGTGGCCAACCACACCTCACCCATTGATGTCATCATCCTGGCAAGCGATGGCTGCTATGCAATGGTTGGGCAAATCCATGGTGGTTTGATGGGCGTGATCCAGAAGTCTATGGTGAAAGCCTGCCCACATATTTGGTTTGAACGCTCTGAAGTCAAAGACcgacatctagtggccaaaagATTGAGTGATCATGTAGAAGACAAAACTAAACTGCCTATTCTCATTTTCCCTGAAGGCACCTGCATCAACAACACTTCAGTAATGATGTTCAAAAAGGGCAGCTTTGAGATTGGCTCCACAGTCTACCCTGTGGCCATCaagTACGACCCCCGCTTTGGAGATGCCTTCTGGAACAGCAGCCAGTTTGGGATGGTCAACTACCTGCTGAGGATGATGAGCAGCTGGGCCATTGTGTGCAGCGTGTGGTACCTGCCACCCATGACCAGAGAGgaaggagaggatgcAGTCCAGTTTGCCAATCGGGTTAAAGCAGCTATCGCCAGGCAAGGAGGGCTGGTGGACTTGCTATGGGATGGAGGTTTAAAGCGAGGGAAGGTAAAAGACACCTTCAAAGAGGAGCAACAAAAGTTATACAGCAAAATGCTAGTGGGAACCCAAGAGGACCGCAGTCGTTCTTGAAGACAAATGCAAGGAGTTTAAGATGATCAAGACCCACTTGGGGACCACCGAATGGACAGTAAAGGAGTTTTTGACTTGGAATACTCCCACCCTCATGTCAGGAATATTTCACTTGGCTTTCTCGGTCACTGCCTCAGCTTGGCATTTCAAGTTCTCATCGCTGTTACAGCCCATTCTGGGCCTTGTCTCTGTTTCTAATGAACTGGCCTCTACTGTACCAGTGTGTCATGAAACTGCTCACTAAGATGGTTTGTTGTCTTCCCTGATGGTGACAAAACTGTCTTTTGAGTGACTAATGTATGTATGTCCTTCATTGAGTTAATGTATATGTCTTGTTCTTAACATTtctcttttttttgtattttttatttttttaattaataaTGACAGTTATTATCATAATTGTTCTTTAAGTTACAAGAGATATGTGTGGAGATGTACTGTAGCAATGCAACATAGAGAAGTACTGTCAAGTTTGTACTGAAGGGGAAAACTGTGACCATGTTGGGAAATGCATGAATGGCTTGTTCCCAACACGACCAAGATGGTGAGGTGCCACGGTAAACATGTTTCTAATACttttttattgtttgtttttttagatGAAAAAAGCCTTTtgttttaaaggtccaatgcagctgttttaatctcaatatcaaatcatttctgggtagcaattaagtaccttactgtgattgttttcaattaaaatggtcaaaaagaaaccaGGAAAGCTTCTTAGCaaaaagcaatttctcaagcaagaattttgctaggactgcctGGGAGTGGTGAGTGAAAAATCGAAAACTgcctgttattggcagagagggcTAGAACTCTtatttattggtctattaactgatTTACCTcctagtgatgtcaccaggcaggccaagaCTCCATCCTACCAAAACTTCAGGCGGTCTTTTGAAACagcttacactaaaagggcattattatcattgtcacaatttcacagtattattcccaCCTCAtaatgtggaaatatatatagaacacagggaaatcacatttgactgcactgggcctttaagcatTGTATTCATGTGTAAAATATAGGAGTTGTGTTAAAGTGGagcttgttttgtttttctttgtttCTGTTGTGAAGAATATACATTCTCAGTGACTGGTGGGGGTTGTTGAAATGTAGTAGATACTCAACTTTTGTCACATCTAAACTAGCCTACCTTATCTCAATTAACACTTACTTCTGCCTCCCACCCTTATCTACCGTGAAGCTACTTTCTGAGCTGTGTAAAGACTGAGGCCCCTGCCATCGACACCTCACGATAGCTGTGGTTTAAGCAGCATTGTGTGCTTTTAATTTGTTTACTTACTAATTATTTGttataacatggttaaaacgTGATATCATACCAGGCCATGGATGTGAAAAGTATGCCTTGTTCCCTAGCTGCTCTATTAATACTTCCATGAAGGCTTCTCATCATCTACTGTGGGAATTCTCATGCCAAATGCACTCCAGAAAGTGAGGGGGCCTGAAGGAGAAAATGAAAGTACAGCTGCAGAGTTAGACTGATTCCCTGCGCAGCTGCAGTGCAAGCCTAGTGGAAATCCCTGGCCATCGCCTTCCTCAAACTCCTGTTTGGTTCTCTCATCCCTTTATACATTGCTGTACCAAGGGTATAGACGTTTAGATCAAAATCTGTCCAATGTTGACCAATAAAAACCCAAGGATGAAGATATCAAA
>XM_021606002.2
GTCAGTACCCAGCCATGCTTCAGTGTTTCCACGTCCCACCACCAGGTGTCAGTTTAGAGACACTGAGGGAGGTGTTTTTGTTCTTGCTGATAAACACGAGACACCAAAACCAACGAGATTATCGCAGGAACATCTGATGTGCAGCATCATAGTTCGTCCAGAAATACTTTCATCACGTTGCATCCACGCAACTATCCGATAGCCACCGGGTGGAGACAACAATGTGAGAGGTCCGAAACAAAGCCCGATACAAAGACGGCTAACATCGTTGCTGATCGGACAACCTTGGGTACCAGTGCATGGGATGCTCAACTGAAGAGGCTTGCTACTTTTGGATCATTTCAACACAATATTCTCAATCCCTTTCAGGCTCCAAAAACAAAGGCTTATGTTCTATTGTTGACACATTTGAAacaattctttaaaaaaaaaatttttttagaGTAGTGCAGGatggaattattattttttgttgagTTCTTCTCAGTTTTTCATTGTCGACCAATGCACCACATTAAGTTTGAATGATAGGAAGCTAAAGAAAATAACTTGACTGGAAGGCCCAGTTGCTGTAACATATTTCTAAAGCTGGGAGAGGCAGTAGCAAGATGCTGTCCTCTACAGCCATGGATTCACTGGCCAGTTGGAGGAGGAGTCTGGTCCCTCAGACGTCTTAATGAAGGCCGTGTTCTGGCTGAGAACTGAGACCAAGGTCCTAAAAGGCTAACAAGTGAggcactgtcctctcctgctgttgACTTGCCTTTATATTCTGTGTAGTAGGATCCCCACACTTCCCCCTAAAGCCTCAAGATGGGCCTGTTCTTAGACTTCAACCCCTTTGATAACCTGCTGTGCATTCTCCTGGGCATCTCCTTCACGGTGTGGTTCACCCTACTGCTGGTCTTCATCATCGTGCCTGCCATCTTTGGAGTGTCCTTTGGCATTCGACAGCTCTACATGAAAACACTACTGAAGATCTTTGAGTGGGCCACACATAGGATTGAAAGAGGagccaaggacaacaaccatctcTTGTACAAGCCTTACTCTAATGCCATCATCGCCAAGGAGCCCACCTCCCTGGAGGAGGAGATAAAGGAGATCCGGCGCAGTGGCAGTAACCGGGACCTGGACCATGCCTCCGAGTTTGAGATGTCCGACATCTTCTACTTCTGCCGGCAAGGAGTTGAGAGCATCATGGACGACGAGGTGACCAAGAGGTTTTCTGCTGAGGAGCTGGAGTCATGGAACCTGCTGACCCGTAGCAACTACAACTTCCAGCACATCAGTCTGAGGCTGACTGTCCTGTGGGGGCTGGGGGTGGTGATCCGCTACGGCTTCCTTCTGCCTCTCAGGGTAACTCTTGCCTTCACCGGGGTGGGTCTTCTGGTCGTACTCACCTCCATCATCGGGTTTCTTCCAAATGGGAGGATGAAGAACTTCCTCAGTGAGCAGGTGCATCTGATGTGTTACCGGATCTGTGTAAGAGCTCTCACTGCCATCATCACCTACCACGACAGTGAAAACAAGCCCAAGAATGGAGGGATCTGTGTGGCCAACCACACCTCACCCATTGATGTCATCATCCTGGCAAGCGATGGCTGCTATGCAATGGTTGGGCAAATCCATGGTGGTTTGATGGGCGTGATCCAGAAGTCTATGGTGAAAGCCTGCCCACATATTTGGTTTGAACGCTCTGAAGTCAAAGACcgacatctagtggccaaaagATTGAGTGATCATGTAGAAGACAAAACTAAACTGCCTATTCTCATTTTCCCTGAAGGCACCTGCATCAACAACACTTCAGTAATGATGTTCAAAAAGGGCAGCTTTGAGATTGGCTCCACAGTCTACCCTGTGGCCATCaagTACGACCCCCGCTTTGGAGATGCCTTCTGGAACAGCAGCCAGTTTGGGATGGTCAACTACCTGCTGAGGATGATGAGCAGCTGGGCCATTGTGTGCAGCGTGTGGTACCTGCCACCCATGACCAGAGAGgaaggagaggatgcAGTCCAGTTTGCCAATCGGGTTAAAGCAGCTATCGCCAGGCAAGGAGGGCTGGTGGACTTGCTATGGGATGGAGGTTTAAAGCGAGGGAAGGTAAAAGACACCTTCAAAGAGGAGCAACAAAAGTTATACAGCAAAATGCTAGTGGGAACCCAAGAGGACCGCAGTCGTTCTTGAAGACAAATGCAAGGAGTTTAAGATGATCAAGACCCACTTGGGGACCACCGAATGGACAGTAAAGGAGTTTTTGACTTGGAATACTCCCACCCTCATGTCAGGAATATTTCACTTGGCTTTCTCGGTCACTGCCTCAGCTTGGCATTTCAAGTTCTCATCGCTGTTACAGCCCATTCTGGGCCTTGTCTCTGTTTCTAATGAACTGGCCTCTACTGTACCAGTGTGTCATGAAACTGCTCACTAAGATGGTTTGTTGTCTTCCCTGATGGTGACAAAACTGTCTTTTGAGTGACTAATGTATGTATGTCCTTCATTGAGTTAATGTATATGTCTTGTTCTTAACATTtctcttttttttgtattttttatttttttaattaataaTGACAGTTATTATCATAATTGTTCTTTAAGTTACAAGAGATATGTGTGGAGATGTACTGTAGCAATGCAACATAGAGAAGTACTGTCAAGTTTGTACTGAAGGGGAAAACTGTGACCATGTTGGGAAATGCATGAATGGCTTGTTCCCAACACGACCAAGATGGTGAGGTGCCACGGTAAACATGTTTCTAATACttttttattgtttgtttttttagatGAAAAAAGCCTTTtgttttaaaggtccaatgcagctgttttaatctcaatatcaaatcatttctgggtagcaattaagtaccttactgtgattgttttcaattaaaatggtcaaaaagaaaccaGGAAAGCTTCTTAGCaaaaagcaatttctcaagcaagaattttgctaggactgcctGGGAGTGGTGAGTGAAAAATCGAAAACTgcctgttattggcagagagggcTAGAACTCTtatttattggtctattaactgatTTACCTcctagtgatgtcaccaggcaggccaagaCTCCATCCTACCAAAACTTCAGGCGGTCTTTTGAAACagcttacactaaaagggcattattatcattgtcacaatttcacagtattattcccaCCTCAtaatgtggaaatatatatagaacacagggaaatcacatttgactgcactgggcctttaagcatTGTATTCATGTGTAAAATATAGGAGTTGTGTTAAAGTGGagcttgttttgtttttctttgtttCTGTTGTGAAGAATATACATTCTCAGTGACTGGTGGGGGTTGTTGAAATGTAGTAGATACTCAACTTTTGTCACATCTAAACTAGCCTACCTTATCTCAATTAACACTTACTTCTGCCTCCCACCCTTATCTACCGTGAAGCTACTTTCTGAGCTGTGTAAAGACTGAGGCCCCTGCCATCGACACCTCACGATAGCTGTGGTTTAAGCAGCATTGTGTGCTTTTAATTTGTTTACTTACTAATTATTTGttataacatggttaaaacgTGATATCATACCAGGCCATGGATGTGAAAAGTATGCCTTGTTCCCTAGCTGCTCTATTAATACTTCCATGAAGGCTTCTCATCATCTACTGTGGGAATTCTCATGCCAAATGCACTCCAGAAAGTGAGGGGGCCTGAAGGAGAAAATGAAAGTACAGCTGCAGAGTTAGACTGATTCCCTGCGCAGCTGCAGTGCAAGCCTAGTGGAAATCCCTGGCCATCGCCTTCCTCAAACTCCTGTTTGGTTCTCTCATCCCTTTATACATTGCTGTACCAAGGGTATAGACGTTTAGATCAAAATCTGTCCAATGTTGACCAATAAAAACCCAAGGATGAAGATATCAAA

Function

NR:

description
PREDICTED: glycerol-3-phosphate acyltransferase 4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13506 GPAT3_4, AGPAT9, AGPAT6; glycerol-3-phosphate O-acyltransferase 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979776.1 False 3236 mRNA 0.45 12 28313313 28352746
XM_021606002.2 True 3931 mRNA 0.45 13 28313313 28352749

Neighbor

gene id symbol gene type direction distance location
LOC110525665 LOC106585609 coding downstream 3586 28276663 ~ 28309727 (-)
LOC118964856 NA coding downstream 39591 28266817 ~ 28273722 (-)
LOC110525663 lincr coding downstream 53462 28256488 ~ 28259851 (-)
LOC110525662 LOC106585608 coding downstream 66076 28193508 ~ 28247237 (-)
LOC110525660 pdli2 coding downstream 132593 28110968 ~ 28180720 (-)
LOC110525668 LOC106585611 coding upstream 3289 28356038 ~ 28370016 (-)
LOC110525671 sld5 coding upstream 50335 28403084 ~ 28414473 (-)
arid5a LOC106585613 coding upstream 61988 28414737 ~ 28425225 (-)
dbnlb dbnl coding upstream 79610 28430078 ~ 28448183 (-)
ube2d4 UBE2D4 coding upstream 102841 28455590 ~ 28467865 (-)
G492596 NA non-coding downstream 127505 28185570 ~ 28185808 (-)
G492594 NA non-coding downstream 131450 28181496 ~ 28181863 (-)
G492569 NA non-coding downstream 160245 28151359 ~ 28153068 (-)
G492960 NA non-coding upstream 24218 28376967 ~ 28377231 (-)
G492963 NA non-coding upstream 26911 28379660 ~ 28379912 (-)
G492902 LOC106585347 non-coding upstream 49119 28401868 ~ 28402253 (-)
G492979 NA non-coding upstream 53295 28406044 ~ 28406324 (-)
G492982 NA non-coding upstream 56316 28409065 ~ 28409279 (-)
LOC110525655 LOC106585601 other downstream 478011 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 576335 27734995 ~ 27737024 (-)
G491539 NA other downstream 1069120 27216607 ~ 27244193 (-)
G491291 NA other downstream 1446155 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1761686 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1058466 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1125906 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1149504 29502192 ~ 29520980 (-)
G494542 NA other upstream 1322574 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2173937 30526034 ~ 30527686 (-)

Expression


Co-expression Network