LOC110525668 (LOC106585611)


Basic Information

Item Value
gene id LOC110525668
gene name LOC106585611
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28356038 ~ 28370016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606003.2
ACGTGATCCGTGAATAACACAAGTCTGCCAGGACTAGCAGTCATGGCGCTGTACTGCAGATAATGCCGACTTTTCTTGTTGACCAATGACGTAAGAAATCGCCACGGATTTGCTTATTGAAGGGGTGCAGTCAATTTAAACGCAATTCTCTTGGTTTGGTGAACATCTAAAGAAGCAATCAGGATGGCTGAGCCAGGCTCAAGCAATCCCGGTGGCCCTTCTCACACTCCGGCAACGCCCGGAGGGAGTGGCAGGGGTTTGGTGATGGGACGCCGGCTACCAGCTACTATCTCCCCTGGCCGTCTCCCTTCCATGCGCTCCAGAGACCTCACCCTGGGAGGTGTGAAAAAGAAAACTTTCACCCCTAACATTATTGGCCGCAAAGCTAAAGAAGAGCAGAAGGTTGAGGGTGgacaaaggagggagaggagggagaacgaTCGGGGTCGTGAGCGAGGTGGTAGGGGCGGTCGTGGCCGGGGACGTCCAGAGGTCATCCAGTCCCACTCTATCTTTGAGCAGGGGCCTGCAGAGATGATGATTAAGAAAAGAGGTGGCTATGAAGGTGAGAGAGATGCACCAAGTGTGGGTCCCTCACCCATCATCAACATcaagaaggagaagagggagaccGAGGAAGAGACCAAAGAAATTTTGCGCGCTCTGGAACGAGACAATTTCCTGGATGACCCTCACCTTAGGAGTGATGTAAGGAGCTGTCCTGTCCAGCTGCCCCTGGCTGTGTCAGGGTGGGGATTCAAGGAGGAAAGTGATGTGACAGCCTCCTCCAAACCAGACAAGTCTGAAGAGGATAGTGAGGCCATGGATGGCATAAATGCAGTCAAAGtgAAACAGGAGCCAGAAGATGCGCTAGAGGTAAAGAAAATGGAACCCACTTTCAGACCACCACCTCTCCCTGAGCCTGAAGTTTTATCTGAGCTGCTGGAGAGCTGGAGTCAGACCAAAGAAGAGGAGCTGTTCTTTATTCAGCTTCCTGACTCCCTACCAGGGCAGCCGCCCACCCAAGAGGTCAGGCCAGTGAAGACAGAGATGCAGTCAGAGGATGGACAGTCCATGCTTTTGAAAACGGAATCTCAAgaggagcagcaggaggaaAACAGTTGTCATCTGAGGGacctgcaggagggtctggttgGACGGCTGTTGGTGCGGAAGTCTGGTCGGGTTCAGCTCATACTGGGGCATGTCACACTAGATGTGGCTCTGGGAACCTCGTGTGCTTTCCTCCAGGAGCTGGTGTCAGTTGGAACAGGAGAGGGCCGGACTGGTGACTTGTCAGTGCTGGGACACATCAAACACAAATTGGTCTGCTCGCCAGACTTTGAAGCCCTGTTGGAGAACAGAGTGTGACGAACCATTAGGCAATATCTACACTACAGTGGGGACCTAatccagaaagacacacagaccATGCAGTGCTGTATCAGGTCTATAAGGACAGTAGTACCACAAGCAGACAACACCCAGCTTTTTTCAGGTGTCCAATGTGGTTAATTGGTCCTGGAAAGTCGCAGAATGTGTAATAGAAAGTCAGAGCTCCTACCACTATTTTGTAAGAATAGACAGCTTGTTTACGGaacattgtatttatttttctctctgcagaaAGTGATAGGAGAATATATTTTGAGATGTGTTCTAAAAAAAGATGTGCTAAGTGACTCCAATAAATGGAAGGTACAGTATTCTCTTCATGAATGTGCCAAATTCTAAATGGCCTATTCCAGTGTTATAAGCAGATCCCTATCAGTTCTCTGCTCGTGAGGGATAAGTGGGAAAAGTAATATTGCCCCTGTAGTATCCTGTAAACGCATACCTAAATTACTGGATGTAAGATGACATTTTACTTGGATGTAAGATGAATAAAAAGAACAAAGAAAA

Function

NR:

description
DNA-directed RNA polymerase III subunit RPC4-like

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03026 RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606003.2 True 1902 mRNA 0.49 9 28356038 28370016

Neighbor

gene id symbol gene type direction distance location
LOC110525666 LOC106585610 coding downstream 3289 28313313 ~ 28352749 (-)
LOC110525665 LOC106585609 coding downstream 46311 28276663 ~ 28309727 (-)
LOC118964856 NA coding downstream 82316 28266817 ~ 28273722 (-)
LOC110525663 lincr coding downstream 96187 28256488 ~ 28259851 (-)
LOC110525662 LOC106585608 coding downstream 108801 28193508 ~ 28247237 (-)
LOC110525671 sld5 coding upstream 33068 28403084 ~ 28414473 (-)
arid5a LOC106585613 coding upstream 44721 28414737 ~ 28425225 (-)
dbnlb dbnl coding upstream 62343 28430078 ~ 28448183 (-)
ube2d4 UBE2D4 coding upstream 85574 28455590 ~ 28467865 (-)
zgc:153044 dus18 coding upstream 182248 28552264 ~ 28556013 (-)
G492596 NA non-coding downstream 170230 28185570 ~ 28185808 (-)
G492594 NA non-coding downstream 174175 28181496 ~ 28181863 (-)
G492569 NA non-coding downstream 202970 28151359 ~ 28153068 (-)
G492960 NA non-coding upstream 6951 28376967 ~ 28377231 (-)
G492963 NA non-coding upstream 9644 28379660 ~ 28379912 (-)
G492902 LOC106585347 non-coding upstream 31852 28401868 ~ 28402253 (-)
G492979 NA non-coding upstream 36028 28406044 ~ 28406324 (-)
G492982 NA non-coding upstream 39049 28409065 ~ 28409279 (-)
LOC110525655 LOC106585601 other downstream 520736 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 619060 27734995 ~ 27737024 (-)
G491539 NA other downstream 1111845 27216607 ~ 27244193 (-)
G491291 NA other downstream 1488880 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1804411 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 1041199 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1108639 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1132237 29502192 ~ 29520980 (-)
G494542 NA other upstream 1305307 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2156670 30526034 ~ 30527686 (-)

Expression


Co-expression Network