LOC110525671 (sld5)


Basic Information

Item Value
gene id LOC110525671
gene name sld5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28403084 ~ 28414473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606009.2
CACTGCTTTCGGTTGGCGCGAACTTTAACCGGAAGTGTGCGACTCTTGTTTCTGAGGAGGTTAATGAGCTGTCGACGTCATTTACAGTGTTGTCTAGATATAATGTAAAAAAGTAACATTCTGCGTAGCTAGTTTAATAGAGTACCACATTTTGTGTAGGCTAAGCAAGTATAGGATGTCGGATACGTTGTCTGATGATGCCAGCGGAGGAGATGATGGCCAAGAAGATGTGATGACTCCAGCGGAGCTGATTGGGAAATTGGaagagGCCTGGCTGAATGAGAGGTTCTCTCCTGAGCTTCTGGAGAACAAGTCAGAGATGGGAGAGTGTGTGATGGAGCAGCTGACTCACATGGAGGCCAACCTGCAGCGGGTTAGGAGGGGTGATGTGAAGGCAAGTGTCCACCGCATGGAGATTGACAGGATCCGCTTTGTCCTCAGCAGCTACCTCCGCTCTCGCCTCCAAAAGATTGAGAAGTTTTTCCCACATGTGTTGGAGAAAGAGAAGTCTCGAGTGGAGGGAGATCCTTCGTTCCTGTCTCCAGAGGAGTTTGCTTTTGCCAAAGAATATCTGGCCAACACAGAGACCTATCTGAAGGCTGTAGCTCTGAAACACATGCCCCCCAATCTACAGACAGTGGATATGCTGAAAGCAGTACCAGAGCCTTGTCTGGACTCCTTTGTGTTCCTacgtgtgagggagagacaggaaaaCATCTTGGTGGAACCTGAGACAGATGATCAGAGAGAGTATGTTGTGGATCTTGATGTGGATTCTCAGCATCTGATGCGGTATCGCTCTATAGCACCCCTGGTTTCAAGTGGAGCAGTACAGCTAATTTAACTGTCAAGGTCCCTGCTGACTACTGGCATCCTAGAGGAGGAGGGACTGGGGGGGAGAGTTCACTGGCAGAGGAAAGCTTGGACCTGGGCCCAGGTCTTGGTGGAACCATGGGTCGATCACCATGGCCAGGAGTAGAGGCCAGGATTATTGGAATTGTTTCCACAATATCAGTGAAGGTTTGAATTTCTGAAAGCTGCTCGAGCTTCAACACCACATCAGCAACAATCAATATCTCTCTGCAGCCTCATAACCGACTGACTTTTATTCATGACTCATAGTCTGTGCTTGACCATTTTTGTATTTGTATGCTTTTATGTGTTTTTATTGTTAGGTTTTGGGCTGAGTAATGACTCCTATGACTTGTTCCAATTTAGGTCTGAATAGAAAAGGTGATTGGCGTTAATAACATccagtgttatgaatagtagtaGTAAGGACCAAATTAAGTAACTCCTCACACAAAATAAAAAGTGTCTGTTATTGACAGGCCTAGAGTGCTACCATGTAGAAATTGTAGGCTACCACTATTGGCTAAGAATGATGAGTAAGGTTAACTTCATTGGTCAGGAGAGTAGGGAAGGTGGGATACACCAGATATCATGATAATTAAGGAGGTATATAAACTCAGACACTACTGATACTAGGCGCGTACTAGTTCAGCACCAgtaaagagagaaggaaaagatAACAACAGGATGATTTCAACTTTTTCGAATAAACTGTAAGTTAGTGTTTTTAA
>XM_021606008.2
CACTGCTTTCGGTTGGCGCGAACTTTAACCGGAAGTGTGCGACTCTTGTTTCTGAGGAGGTTAATGAGCTGTCGACGTCATTTACAGTGTTGTCTAGATATAATGTAAAAAAGTAACATTCTGCGTAGCTAGTTTAATAGAGTACCACATTTTGTGTAGGCTAAGCAAGTATAGGATGTCGGATACGTTGTCTGATGATGCCAGCGGAGGAGATGATGGCCAAGAAGATGTGATGACTCCAGCGGAGCTGATTGGGAAATTGGaagagGCCTGGCTGAATGAGAGGTTCTCTCCTGAGCTTCTGGAGAACAAGTCAGAGATGGGAGAGTGTGTGATGGAGCAGCTGACTCACATGGAGGCCAACCTGCAGCGGGTTAGGAGGGGTGATGTGAAGGCAAGTGTCCACCGCATGGAGATTGACAGGATCCGCTTTGTCCTCAGCAGCTACCTCCGCTCTCGCCTCCAAAAGATTGAGAAGTTTTTCCCACATGTGTTGGAGAAAGAGAAGTCTCGAGTGGAGGGAGATCCTTCGTTCCTGTCTCCAGAGGAGTTTGCTTTTGCCAAAGAATATCTGGCCAACACAGAGACCTATCTGAAGGCTGTAGCTCTGAAACACATGCCCCCCAATCTACAGACAGTGGATATGCTGAAAGCAGTACCAGAGCCTTGTCTGGACTCCTTTGTGTTCCTacgtgtgagggagagacaggaaaaCATCTTGGTGGAACCTGAGACAGATGATCAGAGAGAGTATGTTGTGGATCTTGATGTGGATTCTCAGCATCTGATGCGGTATCGCTCTATAGCACCCCTGGTTTCAAGTGGAGCAGTACAGCTAATTTAACTGTCAAGGAGCCTCCTGTCCTTGGTTCAGATGGGGTTATTAGTCTCCAACTGTGATGGTGGATGACCGGAGGAACACTGACTCCCTTCATTGAACATTAACTACACTGTTTGCAGTACATTGAGGAAGGAGTTATGGACATTATTTGTGGACCTCCAACTCGCCAAGGGCGGGGCATTAACTAGAATGTCTGCAAATATATTACTGACTTGTTGAAATGTTGTGTACCTGAGGACATATCTCTCACATGAAGCCTGCTTATAATTGTAATGATGATCATTGGATCACTAAGGCTACAAGTGAGAGATACCTTTGGTGTGAGGAGGACACAGGAATACATGAATGGCACTTCATAGTGTCTACATGTATGTAATAAGGTTGAGGGATACATGCATGTCATTGCCAAGCATACATTTGTATTTTGCATGCTGTTGCTGCCTTGACCATATATGATTTAAATTCTGGGTTTGTAAACCATATCAATTGTTGATAGCAAAGGAAATAAATGTGTAGATTTATGTTTAAAG

Function

symbol description
sld5 Involved in mitotic cell cycle. Part of CMG complex and GINS complex. Orthologous to human GINS4 (GINS complex subunit 4).

NR:

description
DNA replication complex GINS protein SLD5-like

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10735 GINS4, SLD5; GINS complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606009.2 False 1583 mRNA 0.45 8 28403084 28414473
XM_021606008.2 True 1371 mRNA 0.45 8 28411741 28414473

Neighbor

gene id symbol gene type direction distance location
LOC110525668 LOC106585611 coding downstream 33068 28356038 ~ 28370016 (-)
LOC110525666 LOC106585610 coding downstream 50335 28313313 ~ 28352749 (-)
LOC110525665 LOC106585609 coding downstream 93357 28276663 ~ 28309727 (-)
LOC118964856 NA coding downstream 129362 28266817 ~ 28273722 (-)
LOC110525663 lincr coding downstream 143233 28256488 ~ 28259851 (-)
arid5a LOC106585613 coding upstream 264 28414737 ~ 28425225 (-)
dbnlb dbnl coding upstream 17886 28430078 ~ 28448183 (-)
ube2d4 UBE2D4 coding upstream 41117 28455590 ~ 28467865 (-)
zgc:153044 dus18 coding upstream 137791 28552264 ~ 28556013 (-)
LOC110525678 LOC106585621 coding upstream 574934 28989407 ~ 29010716 (-)
G492902 LOC106585347 non-coding downstream 831 28401868 ~ 28402253 (-)
G492963 NA non-coding downstream 23172 28379660 ~ 28379912 (-)
G492960 NA non-coding downstream 25853 28376967 ~ 28377231 (-)
G492986 NA non-coding upstream 11291 28425764 ~ 28425969 (-)
G492994 NA non-coding upstream 37017 28451490 ~ 28451787 (-)
G493001 NA non-coding upstream 55515 28469988 ~ 28470245 (-)
G493040 NA non-coding upstream 100442 28514915 ~ 28515918 (-)
LOC110525655 LOC106585601 other downstream 567782 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 666106 27734995 ~ 27737024 (-)
G491539 NA other downstream 1158891 27216607 ~ 27244193 (-)
G491291 NA other downstream 1535926 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 1851457 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 996742 29411215 ~ 29415314 (-)
LOC110525681 hectd4 other upstream 1064182 29411204 ~ 29483533 (-)
LOC110525684 LOC106585295 other upstream 1087780 29502192 ~ 29520980 (-)
G494542 NA other upstream 1260850 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 2112213 30526034 ~ 30527686 (-)

Expression


Co-expression Network