LOC110525679 (LOC106585622)


Basic Information

Item Value
gene id LOC110525679
gene name LOC106585622
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29023208 ~ 29070012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606022.2
AAGCATCGCCACTCACCAATCACAGACGGTAAGGGGCGGAATAAGAGAGTTGTTcataaaggcacatgacatcagCCTTAATACGTAGCCACAGCTAAAAAACTACGATGGTTCTCATCAAGGAATAccgtGTGGTCTTACCCTGTACAGTGGAGGAGTATCAAGTGGGGCAGTTGTACTCCGTAGCAGAGGCCAGTAAGAATGAGACGGGCGGAGGAGAGGGCATCGAGGTCCTTAAGAATGAACCCTATGAGAAGGAGGGCGAGAaaggacagtacacacacaaaatCTACCATCTGAAGagTAAAGTCCCAGCGTTTGTCAAGATGATAGCTCCTGAGGGCTCCCTGGTCTTCCATGAAAAGGCCTGGAATGCTTACCCTTACTGCCGAACCATTGTAACGAATGAGTATATGAAAGACGACTTCATCATTAAGATTGAGACATGGCACAAACCTGACCTAGGCACAGTAGAAAACGTGCACAAGCTGGACGTGCCCACATGGAAGAGTGTGGAGGTGGTTCCCATTGACATCGCAGATGGGGAACAAGTGGCCCCTGCTGACTACAAGGCAGATGAGGACCCTGCTCTGTTCAAGTCAGCTAAGACTGGTAGAGGACCCCTGGGACCCAACTGGAAGAAGGAGCTGGTTAGTAAGGCTGACTGCCCGAGGATGTGTGCCTACAAACTGGTCACTGTCAAGTTCAAGTGGTGGGGCCTGCAGAACAAGGTGGAGAGCTTTATTCACAAGCAAGAGAAGCGCATCTTCACTAACTTCCATCGCCAGCTGTTCTGTTGGATTGACAAGTGGGTGGAGCTGACTATGGAGGACATCAGGCGGATGGAGGCGGAGACCCAGAAGGAGCTGGAGGAGCTTCGCAAACAAGGTCAAGTACGGGGAACCAGTGCTGCCGATGCCGAATGAGATGGAGGGTTTTAAACAGAGATGAAGAGTGAAGATGATGAAGAATTTCGACGTGTGCTCCCTGCGTGCCACCTTTTTATCTTACTGATTCAGGATGAGGAGGACGAGGGCTCTGCTCCAATCGCTCAATAGACCAGCACCCTGACCTACCTGCATCCAATTATAGACATTCTATCCACAGAATAATTGATTTGTAGAAAGTGACACGATCATAGCTTATAATTTTGATCTCCTAAAGACATTATCAAGAAGCAATGACCTCAGTAAAGCcagctaccaccaccatgttgtTGATAGACTAGTCCCTCTATCTTCTCTTGATAGACGCTTTGAGGGCTGCTTGGTTGTTGAGAGATTAATATTTTCAAAGCATTTAATTGGCATGATTCCCTTATGGCAGGTGTTGGACCTGTGTTTTGTTATTCCAGTCGAGTAGGATCGTTCCTCTGTGGTCTGTTGCCTTGCCCATTTCTTTTGTTTTCCTTTGTATTCGTTGATATTTTCCCCAGATCATTCCTTTCATGTCCTCTTCTAGCTGTTCATAACTCTATGGTTTTCCATTAGCTGGCGAAAGAGATCCTGTCAGTGTGTTCTCCAAAAACGTGTCCCTTCCTGCCATGGCGTTCATTAAGAGATTACTGACACCCTTGGCACCTGTGCCCATCCTAATATTTCCCCCTCCCTCTGCATCTTATTAACACTCTGATGATCTTGTCCACACAGGTATTTCACACTCACTCCCATGCAaattaacacaaacacacactcatatgcACATGTAGGTGTGAATGCCTTTGTGGTGGCTGATTTCTTCTAAGCTCAAGCTGGGCAGATCCCTGCAGGATCCTTCAACTGAAGGGAAGTGGCTGTTGGAGTGTTTGGAGCTGTCACTGTTTTTCCCACACTCCCCATTCTCCATACGCTCACACTCAGTCAATCCGCTCCTCCCCAGCGGATGTCCCCAGAGCGAAACCGCACTGAAAAACAGTCACAGATGGCGCTACACCCTTCCAGTCTCTGTCACGCACTGCTCACCCCACCCTGCAGTCCACCACCCCAgtagcctgcctgtctgtctgccttattCCTGTGGATCTCTGGGACCGTGTTCTGCTGCAGGTTGTATCCTGCTGAACAGGAGCATCAGGTCAACAGACACCCAGCACCACCCTAGCCCAGACCAGGCCACCACCCCAGACCAGGCCACACCTGACTGGGCCTGTTTACCGTCGCAGCTGCCTCCCTACCTACTCACTCAGCACTACACTGCCTTACTGTACCTATACAGTACCCCCACATGACATACTGTACCTCCACTCTGTCATCTACCCCTTTACCTATTTGCCAGACTGGGGGTCTGCTTCTGGGTGCTAACGAGCACCACCATGCCTTCTGGCTCCACACGGGCACCAGTTAGGAACCACTCCGTAGTCTTTTAGGATTTACTACAGGGACACTGATCAACAGAGGGTAGAACAGGGATGGTCCTTGGGGGCCTGAGTTGGTCTCTCACTTGcaccagctaacacacctgactccactAAACAGCTAATCATGCAAGAATTAGAATGCAATTTGTTTAATCCGCTGTgcttgctagggatggggggtgaCACTACTCtggcccctgaggactggagttgcccatccctggggCAGATGAAGGGCTTGATTGGTTTGCAATGGCTTTAAGATATGTTTTAGTTGAACCACACAATGTGCTCAAGGTCCTAATGCATGTTTGTTCTATTGAACTGTGGTGGGGTGATTATTCCCTGCCGTGATACTGTACTGATGTAGGCAACAGCACTCCCCAGCAGCAAGCCGGTCGGACAGTTCCGTGCTGGAGCCCGAATGCTACTTCCTGTTTAAGCACCAAAGTGCCTTCATGttattgtgtgcatgtctgcGTGCTTGTGGGACAATAAAGAATGCATGTGTATCTTACCTTGTCATTCAACCTCAGCCATTCTGCCTATTTTTATATATAGACATGCTTGCAGCTAAGATGGAtggaatatttttttatgaagagCTTAGCCTTGATGGTCTATTTTTATTGGGAAAGCCTTACAGGGGGATGTGAGAACCTTAGTGATTGGTTTAGTGCTCACCCAAAGAGTGTGCATGGCTCTGGGTGATATCATTTGTTTACATGTGTTGTTTACTATACACACAATTCCCCAGGGGCAATACTGACTCACCAGCAGATAGATGGCCAACTGAACTCTCCTGAACCCCACAACTGAGTAGAGATATCATTAGTACTCATGTCCGTTTCAGTTGTGAGTGACTGACAGGACATGAAAAGTCATGGCCATAATGGGACTGATGAAGTCCAATTTCCCATCAATGACAGGTTTATGCAGTCAAAGAAACTGTAAGAGTGTTGAATATGACTAATGTCTTAAGATCTGTCTACAACCTCTGCCTTATATTGAATAGAAAACTTGTTAAAACTCCATAATGCAACACCACTCTTGTAGCGAACCATTGTTCTATGATATCTGCACTGTGGGCAAAGGACAGCGGGGAAGTAGTCTTTACAAGAAACTGTACAGTGTGGTCATGATTTATGAAATGTACTGTTAAGTTTCTAGAAGAAAATGCTTTTAAATGTTTCTGATCATCTGAAATTCAGGGGACATGGTAGTGAATGTATTTAATTTAGCCTTTTCCATTTGTAGAGTTTTGTGCCGCGGGAAGTCTACATAATGCATCTAATTACTGAATTAAATGTCAACGTACTGCT
>XM_021606024.2
AAGCATCGCCACTCACCAATCACAGACGGTAAGGGGCGGAATAAGAGAGTTGTTcataaaggcacatgacatcagCCTTAATACGTAGCCACAGCTAAAAAACTACGATGGTTCTCATCAAGGAATAccgtGTGGTCTTACCCTGTACAGTGGAGGAGTATCAAGTGGGGCAGTTGTACTCCGTAGCAGAGGCCAGTAAGAATGAGACGGGCGGAGGAGAGGGCATCGAGGTCCTTAAGAATGAACCCTATGAGAAGGAGGGCGAGAaaggacagtacacacacaaaatCTACCATCTGAAGagTAAAGTCCCAGCGTTTGTCAAGATGATAGCTCCTGAGGGCTCCCTGGTCTTCCATGAAAAGGCCTGGAATGCTTACCCTTACTGCCGAACCATTGTAACGAATGAGTATATGAAAGACGACTTCATCATTAAGATTGAGACATGGCACAAACCTGACCTAGGCACAGTAGAAAACGTGCACAAGCTGGACGTGCCCACATGGAAGAGTGTGGAGGTGGTTCCCATTGACATCGCAGATGGGGAACAAGTGGCCCCTGCTGACTACAAGGCAGATGAGGACCCTGCTCTGTTCAAGTCAGCTAAGACTGGTAGAGGACCCCTGGGACCCAACTGGAAGAAGGAGCTGGTTAGTAAGGCTGACTGCCCGAGGATGTGTGCCTACAAACTGGTCACTGTCAAGTTCAAGTGGTGGGGCCTGCAGAACAAGGTGGAGAGCTTTATTCACAAGCAAGAGAAGCGCATCTTCACTAACTTCCATCGCCAGCTGTTCTGTTGGATTGACAAGTGGGTGGAGCTGACTATGGAGGACATCAGGCGGATGGAGGCGGAGACCCAGAAGGAGCTGGAGGAGATGCGTAGGAAGGGCTCTGTTCGAGGCACGAAGGCTTCAGACGAGTAGCTGCTCCAGGTGTAGGTCTGAGGAAGGCTGTCTTCGCAAACAAGGTCAAGTACGGGGAACCAGTGCTGCCGATGCCGAATGAGATGGAGGGTTTTAAACAGAGATGAAGAGTGAAGATGATGAAGAATTTCGACGTGTGCTCCCTGCGTGCCACCTTTTTATCTTACTGATTCAGGATGAGGAGGACGAGGGCTCTGCTCCAATCGCTCAATAGACCAGCACCCTGACCTACCTGCATCCAATTATAGACATTCTATCCACAGAATAATTGATTTGTAGAAAGTGACACGATCATAGCTTATAATTTTGATCTCCTAAAGACATTATCAAGAAGCAATGACCTCAGTAAAGCcagctaccaccaccatgttgtTGATAGACTAGTCCCTCTATCTTCTCTTGATAGACGCTTTGAGGGCTGCTTGGTTGTTGAGAGATTAATATTTTCAAAGCATTTAATTGGCATGATTCCCTTATGGCAGGTGTTGGACCTGTGTTTTGTTATTCCAGTCGAGTAGGATCGTTCCTCTGTGGTCTGTTGCCTTGCCCATTTCTTTTGTTTTCCTTTGTATTCGTTGATATTTTCCCCAGATCATTCCTTTCATGTCCTCTTCTAGCTGTTCATAACTCTATGGTTTTCCATTAGCTGGCGAAAGAGATCCTGTCAGTGTGTTCTCCAAAAACGTGTCCCTTCCTGCCATGGCGTTCATTAAGAGATTACTGACACCCTTGGCACCTGTGCCCATCCTAATATTTCCCCCTCCCTCTGCATCTTATTAACACTCTGATGATCTTGTCCACACAGGTATTTCACACTCACTCCCATGCAaattaacacaaacacacactcatatgcACATGTAGGTGTGAATGCCTTTGTGGTGGCTGATTTCTTCTAAGCTCAAGCTGGGCAGATCCCTGCAGGATCCTTCAACTGAAGGGAAGTGGCTGTTGGAGTGTTTGGAGCTGTCACTGTTTTTCCCACACTCCCCATTCTCCATACGCTCACACTCAGTCAATCCGCTCCTCCCCAGCGGATGTCCCCAGAGCGAAACCGCACTGAAAAACAGTCACAGATGGCGCTACACCCTTCCAGTCTCTGTCACGCACTGCTCACCCCACCCTGCAGTCCACCACCCCAgtagcctgcctgtctgtctgccttattCCTGTGGATCTCTGGGACCGTGTTCTGCTGCAGGTTGTATCCTGCTGAACAGGAGCATCAGGTCAACAGACACCCAGCACCACCCTAGCCCAGACCAGGCCACCACCCCAGACCAGGCCACACCTGACTGGGCCTGTTTACCGTCGCAGCTGCCTCCCTACCTACTCACTCAGCACTACACTGCCTTACTGTACCTATACAGTACCCCCACATGACATACTGTACCTCCACTCTGTCATCTACCCCTTTACCTATTTGCCAGACTGGGGGTCTGCTTCTGGGTGCTAACGAGCACCACCATGCCTTCTGGCTCCACACGGGCACCAGTTAGGAACCACTCCGTAGTCTTTTAGGATTTACTACAGGGACACTGATCAACAGAGGGTAGAACAGGGATGGTCCTTGGGGGCCTGAGTTGGTCTCTCACTTGcaccagctaacacacctgactccactAAACAGCTAATCATGCAAGAATTAGAATGCAATTTGTTTAATCCGCTGTgcttgctagggatggggggtgaCACTACTCtggcccctgaggactggagttgcccatccctggggCAGATGAAGGGCTTGATTGGTTTGCAATGGCTTTAAGATATGTTTTAGTTGAACCACACAATGTGCTCAAGGTCCTAATGCATGTTTGTTCTATTGAACTGTGGTGGGGTGATTATTCCCTGCCGTGATACTGTACTGATGTAGGCAACAGCACTCCCCAGCAGCAAGCCGGTCGGACAGTTCCGTGCTGGAGCCCGAATGCTACTTCCTGTTTAAGCACCAAAGTGCCTTCATGttattgtgtgcatgtctgcGTGCTTGTGGGACAATAAAGAATGCATGTGTATCTTACCTTGTCATTCAACCTCAGCCATTCTGCCTATTTTTATATATAGACATGCTTGCAGCTAAGATGGAtggaatatttttttatgaagagCTTAGCCTTGATGGTCTATTTTTATTGGGAAAGCCTTACAGGGGGATGTGAGAACCTTAGTGATTGGTTTAGTGCTCACCCAAAGAGTGTGCATGGCTCTGGGTGATATCATTTGTTTACATGTGTTGTTTACTATACACACAATTCCCCAGGGGCAATACTGACTCACCAGCAGATAGATGGCCAACTGAACTCTCCTGAACCCCACAACTGAGTAGAGATATCATTAGTACTCATGTCCGTTTCAGTTGTGAGTGACTGACAGGACATGAAAAGTCATGGCCATAATGGGACTGATGAAGTCCAATTTCCCATCAATGACAGGTTTATGCAGTCAAAGAAACTGTAAGAGTGTTGAATATGACTAATGTCTTAAGATCTGTCTACAACCTCTGCCTTATATTGAATAGAAAACTTGTTAAAACTCCATAATGCAACACCACTCTTGTAGCGAACCATTGTTCTATGATATCTGCACTGTGGGCAAAGGACAGCGGGGAAGTAGTCTTTACAAGAAACTGTACAGTGTGGTCATGATTTATGAAATGTACTGTTAAGTTTCTAGAAGAAAATGCTTTTAAATGTTTCTGATCATCTGAAATTCAGGGGACATGGTAGTGAATGTATTTAATTTAGCCTTTTCCATTTGTAGAGTTTTGTGCCGCGGGAAGTCTACATAATGCATCTAATTACTGAATTAAATGTCAACGTACTGCT

Function

NR:

description
PREDICTED: phosphatidylinositol transfer protein beta isoform-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606022.2 False 3678 mRNA 0.47 11 29023208 29070012
XM_021606024.2 True 3757 mRNA 0.47 12 29023208 29070012

Neighbor

gene id symbol gene type direction distance location
LOC110525678 LOC106585621 coding downstream 12492 28989407 ~ 29010716 (-)
zgc:153044 dus18 coding downstream 467195 28552264 ~ 28556013 (-)
ube2d4 UBE2D4 coding downstream 555343 28455590 ~ 28467865 (-)
dbnlb dbnl coding downstream 575025 28430078 ~ 28448183 (-)
arid5a LOC106585613 coding downstream 597983 28414737 ~ 28425225 (-)
LOC110526490 LOC106580375 coding upstream 704 29070716 ~ 29398888 (-)
LOC110525681 hectd4 coding upstream 341192 29411204 ~ 29483533 (-)
LOC110525683 NA coding upstream 344749 29414761 ~ 29415342 (-)
LOC110525684 LOC106585295 coding upstream 432180 29502192 ~ 29520980 (-)
LOC110525685 LOC106585294 coding upstream 456771 29526783 ~ 29575598 (-)
G494130 NA non-coding downstream 37281 28985711 ~ 28985927 (-)
G494122 NA non-coding downstream 51997 28970906 ~ 28971211 (-)
G493419 NA non-coding downstream 74071 28948864 ~ 28949137 (-)
G493411 NA non-coding downstream 84730 28938251 ~ 28938478 (-)
G494205 NA non-coding upstream 79727 29149739 ~ 29149956 (-)
G494208 NA non-coding upstream 87381 29157393 ~ 29157612 (-)
G494212 NA non-coding upstream 94595 29164607 ~ 29164809 (-)
G494228 NA non-coding upstream 127848 29197860 ~ 29198198 (-)
LOC110525655 LOC106585601 other downstream 1187906 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1286230 27734995 ~ 27737024 (-)
G491539 NA other downstream 1779015 27216607 ~ 27244193 (-)
G491291 NA other downstream 2156050 26824867 ~ 26867158 (-)
LOC110525619 LOC106585557 other downstream 2471581 26481087 ~ 26551627 (-)
G494389 LOC106585296 other upstream 341203 29411215 ~ 29415314 (-)
G494542 NA other upstream 605311 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 1456674 30526034 ~ 30527686 (-)

Expression


Co-expression Network