LOC110525680 (LOC106585298)


Basic Information

Item Value
gene id LOC110525680
gene name LOC106585298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29403750 ~ 29407010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606025.2
GGAAAACTCTACTGGAACTGTCTAGTGTCCCACTGTACTTGACTTTTGAGAAGTTAACATTTTACTCTAAAACAGAAGTCTATTAAGCTAGAGAAATGAAGAACCCACAGGAGAGAGCTCTTCACGTGGCCACCCCACTGAGGGAGAGCCTTGCCCTAACCAAAGTGGCAGGCACCTCTGTCTATCTGAAGCTTGACTCATCCCAGCCCACAGGATCCTTCAAAATCAGGGGCATTGGACACCTTTGCAAGACATGGGCCAAGCGAGGCTGTGAGAGATTTGTCTGCTGTTCAGGAGGAAATGCTGGTATGGCTGCTGCCTACTCTGCCCGTAAGCTTGGTGTACCTGCCACCATCATCGTGCCCAGTGTCACACCCAAACCAACAGTGGAGAGGCTGAGGGACGAGGGCGCCAATGTGGTGATTCATGGCAAGGCGCTGAATGAGAGCATTGAATATGGACAACAGCTTGTGGCCAACAACCCTGGATGgatcttcatctctccctttgaTGATCCTCTCATCTGGGAGGGCCATATGTCTCTGGTGAAGGAGCTGGAGTCCGAGCTGCAGGAGAAGCCTGGTGCGATGGTGTTGTCTGTTGGCGGTGGAGGCCTCATGAACGGGGTTGTTGAAGGACTGCGCCGTGCCGGCTGGAACGATGTTCCAGTCATAGCCATGGAGACTGTGGGAGCACACAGTCTCAATGCTGCTATGAAGGCTGGGAAGTTGATCACTCTGACTGAGATCACAAGCATTGCCACCACGTTGGGCCTGACAAGAGTATCTGCACAGACCCTGAAACTTGCTGGTGAACACACAGTTTACTCCGAGCTGGTCACAGACCAGGAGGCTGTCAAAGCTGTCGAGCGCTTTGTTGacGATGAGAAGGTCCTGGTGGAGCCTGCGTGTGGCGCTGCCCTGGCAGCTGTGTACTGTGACATCATCCCCAGACTGCAGAAGGAGGGCAAGCTGGCGCGGGACCTGGGACCTGTGGTGATCGTGGTGTGTGGAGGCAACAACATCAGCATGAAACAGCTCCAGAAACTGAAGAAGCAGCTGGGCATGTCAtttagctagacagacagacggctTTGCGTCCTGCTTATCCTTTCTCCATCACTCCATTCCTCTATTACCCCGATCCTTCCAGTTAAAGCTCCCCTACCTCATTGGGTACTACC

Function

NR:

description
L-serine dehydratase/L-threonine deaminase-like

GO: NA

KEGG:

id description
K17989 SDS, SDH, CHA1; L-serine/L-threonine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606025.2 True 1183 mRNA 0.53 7 29403750 29407010

Neighbor

gene id symbol gene type direction distance location
LOC110525677 NA coding upstream 840426 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 851589 28543021 ~ 28552161 (+)
LOC110526333 LOC106585616 coding upstream 868165 28487813 ~ 28535585 (+)
LOC110525670 LOC106585612 coding upstream 1003427 28392387 ~ 28400323 (+)
LOC110525669 NA coding upstream 1030483 28370701 ~ 28373267 (+)
trnaa-ugc-16 NA coding downstream 158117 29565127 ~ 29565202 (+)
LOC110525686 LOC106585293 coding downstream 169021 29576031 ~ 29586860 (+)
LOC110525687 tmed2 coding downstream 182470 29589480 ~ 29594567 (+)
gtf2h3 gtf2h3 coding downstream 191048 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 200723 29607733 ~ 29609559 (+)
G493689 NA non-coding upstream 4973 29398476 ~ 29398777 (+)
G493678 NA non-coding upstream 16642 29386885 ~ 29387108 (+)
G493676 LOC106583873 non-coding upstream 24958 29378543 ~ 29378792 (+)
G493675 NA non-coding upstream 26961 29376551 ~ 29376789 (+)
G493670 NA non-coding upstream 38661 29364850 ~ 29365089 (+)
G493690 NA non-coding downstream 7760 29414770 ~ 29415323 (+)
G493733 LOC106585296 non-coding downstream 43611 29450621 ~ 29451309 (+)
G493735 LOC106585296 non-coding downstream 45832 29452842 ~ 29453254 (+)
G493736 NA non-coding downstream 46332 29453342 ~ 29453602 (+)
G493737 NA non-coding downstream 50511 29457521 ~ 29457920 (+)
G493450 NA other upstream 413016 28989430 ~ 28990734 (+)
LOC110525650 LOC106585598 other upstream 1612180 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 1860755 27488557 ~ 27543022 (+)
G489447 NA other upstream 3719439 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 465002 29871980 ~ 29880651 (+)
G494065 NA other downstream 677574 30084584 ~ 30129769 (+)
G494946 NA other downstream 915012 30322022 ~ 30344847 (+)
G494943 NA other downstream 1028952 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 1110966 30517976 ~ 30523383 (+)

Expression


Co-expression Network