trnaa-ugc-16


Basic Information

Item Value
gene id trnaa-ugc-16
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29565127 ~ 29565202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-16
ggtcccgtatggctcagttggtagagcatggtgcttgcaatgccagggtcgTGGGTttaattcccatgggggacca

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-16 True 76 mRNA 0.51 1 29565127 29565202

Neighbor

gene id symbol gene type direction distance location
LOC110525680 LOC106585298 coding upstream 158117 29403750 ~ 29407010 (+)
LOC110525677 NA coding upstream 1001803 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 1012966 28543021 ~ 28552161 (+)
LOC110526333 LOC106585616 coding upstream 1029542 28487813 ~ 28535585 (+)
LOC110525670 LOC106585612 coding upstream 1164804 28392387 ~ 28400323 (+)
LOC110525686 LOC106585293 coding downstream 10829 29576031 ~ 29586860 (+)
LOC110525687 tmed2 coding downstream 24278 29589480 ~ 29594567 (+)
gtf2h3 gtf2h3 coding downstream 32856 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 42531 29607733 ~ 29609559 (+)
psmd9 psmd9 coding downstream 51308 29616510 ~ 29621427 (+)
G493749 NA non-coding upstream 32417 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 34919 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 94110 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 95166 29469734 ~ 29469961 (+)
G493743 NA non-coding upstream 97357 29467532 ~ 29467770 (+)
G493835 NA non-coding downstream 47059 29612261 ~ 29612480 (+)
G493847 NA non-coding downstream 60747 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 69715 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 80074 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 102657 29667859 ~ 29668146 (+)
G493450 NA other upstream 574393 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1191935 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1773557 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2022132 27488557 ~ 27543022 (+)
G489447 NA other upstream 3880816 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 306810 29871980 ~ 29880651 (+)
G494065 NA other downstream 519382 30084584 ~ 30129769 (+)
G494946 NA other downstream 756820 30322022 ~ 30344847 (+)
G494943 NA other downstream 870760 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 952774 30517976 ~ 30523383 (+)

Expression


Co-expression Network