LOC110525686 (LOC106585293)


Basic Information

Item Value
gene id LOC110525686
gene name LOC106585293
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29576031 ~ 29586860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606032.2
TATTTATTACAGCTCAGAGACGACCTCTTGTCGGTCacatggtgcacacacacactttaccacTAGAAGTCACCTGACACTCCCTACACAGTCCGTGCAAAAATGTCTGCGCACTTATCATATGGAAGAGTAAATTTAAACATTTTGAGGGAAGCAGCGCGGAAGGAGCTCCGTGAGTTTTTGGACAAATGTGGAGGAAGCAAGGCTATTGTGTGGGATGAATACCTGACTGGACCCTTTGGATTGATAGCACAATATTCATTGTTGAAGGAACATGAGGTGGAGAAGATGTTCACCCTCAAAGGGGGGCGTCTCCCTGCTGCTGACGTGAAAAATATCATCTTCTTTGTCCGTCCCAGGCTTGAGCTGATGGATATTATAGCTGAAAATGTAATCAGTGAGGATAAGATGCATTCCCCACGTGATTTCCACATGTTGTTTGTGCCACGGCGGAGCATGCTCTGTGAGCAGCGGCTGAAAGAGCAGGGGGTCCTGGGCTCGTTTATCAACATAGACGAGTACATCCTAGACCTCATCCCCTATGATGGAGACCTGCTCTCCATGGAGTCTGAGGGGGCATTCAGGGAGTGCTATCTGGAAAGTGACCAGACAAGTCTGTACCACACTGCCAAGGGCCTTATGACTCTCCAGGCTCTGTATGGGACCATCCCCCAGATATTTGGGAAAGGGGAGTGTGCACGGCATGTAGCTAACATGATGCTCAGGATGAAAAGGGAGTTTGCTGGCAGCCAGACTCAGATCCTACCTGTGTTTGACTCACTGCTGCTGCTTGACCGCAATGTAGACCTGCTCACCCCTTTGGCCACACAGCTCACATACGAGGGCCTCATTGACGAAGTCTATGGAATTACCAACGGTTATGTGAAGTTGCCTCCTGAGAAGTTTTCTGCCCAGAAGAAGCAGGGTGAGGCGGGTAAAGACCTGCCCACAGAGCCCAAGAAGATGCAGCTCAACTCCGCAGAGGAGCTATATGCTGAGATACGGGACAAAAACTTCAATGGCGTAGGGGCTGCACTGAGCAAGAAGGCCAAGATCATCTCTGCTGCATTTGAGGAGCGGCACAGTGCCAAAACAGTGGGCGAGATAAAGCAGTTTGTGTCCCAGCTGCCCCACATGCAGGCAGCACGGAGCTCACTGGCCAATCACACCTCCATAGCTGAGCTCATCAAGGACATCACCAcGTCTGAGGCCTTCTTTGATAACCTGACAGTGGAGCAGGAGTTTATGACTGGAGTCGATACAGACAAGGTTAACACATACATAGAGGACTGCATCGCCCAGAAGGATCCCCTAATCAAAATCCTGCGGCTGGTCTGTATGCAGTCGGTCTGCAACAATGGCCTCAAGCAGAAGTTGTTGGACTACTACAAGAGGGAGATTCTGCAGACTTATGGATATGAACACATGCTTACCCTCAACAACCTGGAGAAGACGGGTCTTCTGAAGCCCCAGACAAGCACCAGGAATAACTACCCCACCATCAGGAAGACACTCAAACTCTGGATGGAGGATGCCAATGAACAGAACCCCAACGACATCTCCTATGTGTACAGTGGCTATGCTCCTCTTAGCATCCGTCTGACCCAGGTGTTGGCCAGGCCCGGCTGGCGCAGCATCGAGGAGGTTCTGAAGATGCTCCCTGGTCCACACTTTGAGGAGAGACAACAGCTGCCTGCTGGTCTCCATAAGAAACGCCAGCAGGGGGAGAACAGGACCACTCTGGTGTTCTTTCTGGGAGGGGTGACGTACGCGGAAATCGCTGCCCTGCGCTTCCTGTCTCAGATGGAGGATGGTGGCACAGAATACATCATTGCCACCACCAAGCTCATCAATGGTACGAGCTGGATCAAATCCCTAATGGACCGCCCTGAGGCTCAGGCCTCCTGAGTCTGCTGTCTGCCCCCTCAGGGGGAACAGATGCACTGGACCCAACAAATATTCGGAACAAAAGAGCTTGCCGCTTGTTTTTAATGTCCATATTCCAGCTCTCTGCCAGTGTGTCTGATTGAGCTCAGCAGAAGTCAGCTCCTCAATTGTCAACGTCTTTCCTCTGCAACTCTCACAGCTTGCTAAATGTAGTTCTCCATTGTCACCTGTTGTGGTCACTGTATTGAGCCAAGAAGATGTCCTCTTACTTGGGGCATGATCATATGAAAGGTTCTAAGATCTTTGTAAAATAATAATACTGTATTTATACAGAGGCTGAAATGTAGttgtttgtattattattattattgtttattaGTGATTTCAACCTATATATTGTGTTGTACAGTATAgggcttttctctctcctttccagtaTTTGTGTAAAAAATCCTGTAAATAAAATGTGTAATTGACAGCTTATTACTGCTTTTATAA

Function

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 33A-like

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K20182 VPS33A; vacuolar protein sorting-associated protein 33A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606032.2 True 2385 mRNA 0.49 13 29576031 29586860

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-16 NA coding upstream 10829 29565127 ~ 29565202 (+)
LOC110525680 LOC106585298 coding upstream 169021 29403750 ~ 29407010 (+)
LOC110525677 NA coding upstream 1012707 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 1023870 28543021 ~ 28552161 (+)
LOC110526333 LOC106585616 coding upstream 1040446 28487813 ~ 28535585 (+)
LOC110525687 tmed2 coding downstream 2620 29589480 ~ 29594567 (+)
gtf2h3 gtf2h3 coding downstream 11198 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 20873 29607733 ~ 29609559 (+)
psmd9 psmd9 coding downstream 29650 29616510 ~ 29621427 (+)
LOC110525691 LOC106585288 coding downstream 50934 29637794 ~ 29646752 (+)
G493749 NA non-coding upstream 43321 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 45823 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 105014 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 106070 29469734 ~ 29469961 (+)
G493743 NA non-coding upstream 108261 29467532 ~ 29467770 (+)
G493835 NA non-coding downstream 25401 29612261 ~ 29612480 (+)
G493847 NA non-coding downstream 39089 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 48057 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 58416 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 80999 29667859 ~ 29668146 (+)
G493450 NA other upstream 585297 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1202839 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1784461 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2033036 27488557 ~ 27543022 (+)
G489447 NA other upstream 3891720 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 285152 29871980 ~ 29880651 (+)
G494065 NA other downstream 497724 30084584 ~ 30129769 (+)
G494946 NA other downstream 735162 30322022 ~ 30344847 (+)
G494943 NA other downstream 849102 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 931116 30517976 ~ 30523383 (+)

Expression


Co-expression Network