LOC110525687 (tmed2)


Basic Information

Item Value
gene id LOC110525687
gene name tmed2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29589480 ~ 29594567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606034.2
GTGTACTAGATTATGATACGTAGGCCTACAACAGGTCTTGCACCAGGGCCCCGGTCAAATTGAGGGTGTAGTGTATTAGTACGGAGTGGAAATCCAATAGCTTTTTAAACGTCGACGCGGCCCGTTTTCCCGTCTTTATGTGGCACCATCTTCAAGTAAAACGCGTTCACTGAGGTGTGAAGAACGGGTCCGCGTTCCACTAGTCACCAGTAgtgttaactcctcctccacaaaTCAGTGGCTTGCGAGGGCTAGCTCTACTAGTACGCTTTAGCGTCTTTTTCCACATAGATAGTTGCGAAAAACAACAGCAGTTATGTTTACCCTCTCCGAGTTTATGGTAATTGCAGCTATGTTGTCCGCAACAGCGTCAGGTTATTTTGTAAGCATAGACGCTCATGCAGAAGAATGTTTATTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTTATGTTTGAGGTGGCCGAAGGCGGTTTCCTTGACATCGATGTGGAGATCACGGGTCCAGATGGGAAGCAGATTTATAAAGGAGACAGAGAATCCAGTGGAAAGTACTCTGTGGCTGCCCATATGGATGGCACATACAAGTTCTGCTTTAGCAATAAGATGTCCACCATGACGCCCAAGATTGTCATGTTTACCATTGACATCGGAGAGGCCCCCAAGGGAGACGGCATGGAGACGGAAGGTGGTGGAGACACCTGGGACGCCCACCAGAACAAGCTGGAGGAGATGATTAATGAGCTAGCAGTTGCCATGACGGCAGTAAAACACGAACAGGAATACATGGAGGTCCGAGAGAGAATACACAGAGCAATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGTTGGTAGCCATGACCCTGGGACAGATCTACTACCTGAAGAGATTTTTCGAGGTGCGGAGAGTTGTGTAAAACATGGCTTTTTTTCCAACTCCAACGCCATGGTACAATGTATGTTTTTCCAATCGAGGAGAACTGTCTTTGCATTGACTCCTCAGACTTTGATATCAATAGCACTGAAGAGGGTATTATACATTTTTGATCAAGAAGAGTATTTATGCATTCAAACCCACTGCCCGAAAACTATGCCAGGAGGAGGTTGTGCACACATTAAATACAACACTGGGCTTGGAATGATAGTTAGACAACTGTTCAGCTTGCTCTAGATGTTTTTTAGGGAGTATATTTTGTTGTACAAATAACTTTTGTTTTAACACCTACCGTGCCAATCAGTCACAGTATGCACAATGCATATTTAATGGAAAAAGTAATGGCATATAATCgtactgtatgtatttaagaCTGTTACATTTTGGGGTAAGATGCAGAATAAGAAAAGCCTTGGTGTGAGATCTGAGCTATTGTTGCCAGTTTGAAGTAGTTGCTTGAGCATTTATTGTTCTAGTATTGTACTTTATCAAATGAGGACAATTTTGTACAGATTTTATTCTACTTTGTATTGGTAGTTATGTTCAATGTTTATGCTGGGTTAGCAGAGGGTGACATTGGTCACAACAGATACAGAGCTCAGACTTTCAGAGTCAAATTAAAATGTAGATGCATTTATGACCCAAATCCAGTTCATAATAAAGTTTTTCCTTGTCCTCTTGAGATTGATTATTTTGTAATTAATTAGTACAGTAGTTTTATATACTCTCCCATGGGTCAGCAGAACCTTTTCAAACTCCAGTAAAGCAAGTAGGGGGAAAATGTTCATACAAAGTAAAACACCTGCTTTTTGTGAGTTTCTCCTTAAATCCAAGACTAATAATAAAATCATTGTATTATG
>XM_021606033.2
CTAGATTATGATACGTAGGCCTACAACAGGTCTTGCACCAGGGCCCCGGTCAAATTGAGGGTGTAGTGTATTAGTACGGAGTGGAAATCCAATAGCTTTTTAAACGTCGACGCGGCCCGTTTTCCCGTCTTTATGTGGCACCATCTTCAAGTAAAACGCGTTCACTGAGGTGTGAAGAACGGGTCCGCGTTCCACTAGTCACCAGTAgtgttaactcctcctccacaaaTCAGTGGCTTGCGAGGGCTAGCTCTACTAGTACGCTTTAGCGTCTTTTTCCACATAGATAGTTGCGAAAAACAACAGCAGTTATGTTTACCCTCTCCGAGTTTATGGTAATTGCAGCTATGTTGTCCGCAACAGCGTCAGGTTATTTTGTAAGCATAGACGCTCATGCAGAAGAATGTTTATTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTTATGTTTGAGGTGGCCGAAGGCGGTTTCCTTGACATCGATGTGGAGATCACGGGTCCAGATGGGAAGCAGATTTATAAAGGAGACAGAGAATCCAGTGGAAAGTACTCTGTGGCTGCCCATATGGATGGCACATACAAGTTCTGCTTTAGCAATAAGATGTCCACCATGACGCCCAAGATTGTCATGTTTACCATTGACATCGGAGAGGCCCCCAAGGGAGACGGCATGGAGACGGAAGGTGGTGGAGACACCTGGGACGCCCACCAGAACAAGCTGGAGGAGATGATTAATGAGCTAGCAGTTGCCATGACGGCAGTAAAACACGAACAGGAATACATGGAGGTCCGAGAGAGAATACACAGAGCAATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGTTGGTAGCCATGACCCTGGGACAGATCTACTACCTGAAGAGATTTTTCGAGGTGCGGAGAGTTGTGTAAAACATGGCTTTTTTTCCAACTCCAACGTGAGTCATCAATAACTTGAACCATTAGCCGCACCATACTACAAAGTTGGAAATCAAACAACCTCTGAAAAGCCTTTTCCTTATCCAATCTCATGTCTGTTTTCCTCTTCTCGCACTTCAGGCCATGGTACAATGTATGTTTTTCCAATCGAGGAGAACTGTCTTTGCATTGACTCCTCAGACTTTGATATCAATAGCACTGAAGAGGGTATTATACATTTTTGATCAAGAAGAGTATTTATGCATTCAAACCCACTGCCCGAAAACTATGCCAGGAGGAGGTTGTGCACACATTAAATACAACACTGGGCTTGGAATGATAGTTAGACAACTGTTCAGCTTGCTCTAGATGTTTTTTAGGGAGTATATTTTGTTGTACAAATAACTTTTGTTTTAACACCTACCGTGCCAATCAGTCACAGTATGCACAATGCATATTTAATGGAAAAAGTAATGGCATATAATCgtactgtatgtatttaagaCTGTTACATTTTGGGGTAAGATGCAGAATAAGAAAAGCCTTGGTGTGAGATCTGAGCTATTGTTGCCAGTTTGAAGTAGTTGCTTGAGCATTTATTGTTCTAGTATTGTACTTTATCAAATGAGGACAATTTTGTACAGATTTTATTCTACTTTGTATTGGTAGTTATGTTCAATGTTTATGCTGGGTTAGCAGAGGGTGACATTGGTCACAACAGATACAGAGCTCAGACTTTCAGAGTCAAATTAAAATGTAGATGCATTTATGACCCAAATCCAGTTCATAATAAAGTTTTTCCTTGTCCTCTTGAGATTGATTATTTTGTAATTAATTAGTACAGTAGTTTTATATACTCTCCCATGGGTCAGCAGAACCTTTTCAAACTCCAGTAAAGCAAGTAGGGGGAAAATGTTCATACAAAGTAAAACACCTGCTTTTTGTGAGTTTCTCCTTAAATCCAAGACTAATAATAAAATCATTGTATTATG
>XM_021606036.2
TAGGCCTACAACAGGTCTTGCACCAGGGCCCCGGTCAAATTGAGGGTGTAGTGTATTAGTACGGAGTGGAAATCCAATAGCTTTTTAAACGTCGACGCGGCCCGTTTTCCCGTCTTTATGTGGCACCATCTTCAAGTAAAACGCGTTCACTGAGGTGTGAAGAACGGGTCCGCGTTCCACTAGTCACCAGTAgtgttaactcctcctccacaaaTCAGTGGCTTGCGAGGGCTAGCTCTACTAGTACGCTTTAGCGTCTTTTTCCACATAGATAGTTGCGAAAAACAACAGCAGTTATGTTTACCCTCTCCGAGTTTATGGTAATTGCAGCTATGTTGTCCGCAACAGCGTCAGGTTATTTTGTAAGCATAGACGCTCATGCAGAAGAATGTTTATTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTTATGTTTGAGGTGGCCGAAGGCGGTTTCCTTGACATCGATGTGGAGATCACGGGTCCAGATGGGAAGCAGATTTATAAAGGAGACAGAGAATCCAGTGGAAAGTACTCTGTGGCTGCCCATATGGATGGCACATACAAGTTCTGCTTTAGCAATAAGATGTCCACCATGACGCCCAAGATTGTCATGTTTACCATTGACATCGGAGAGGCCCCCAAGGGAGACGGCATGGAGACGGAAGCCCACCAGAACAAGCTGGAGGAGATGATTAATGAGCTAGCAGTTGCCATGACGGCAGTAAAACACGAACAGGAATACATGGAGGTCCGAGAGAGAATACACAGAGCAATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGTTGGTAGCCATGACCCTGGGACAGATCTACTACCTGAAGAGATTTTTCGAGGTGCGGAGAGTTGTGTAAAACATGGCTTTTTTTCCAACTCCAACGCCATGGTACAATGTATGTTTTTCCAATCGAGGAGAACTGTCTTTGCATTGACTCCTCAGACTTTGATATCAATAGCACTGAAGAGGGTATTATACATTTTTGATCAAGAAGAGTATTTATGCATTCAAACCCACTGCCCGAAAACTATGCCAGGAGGAGGTTGTGCACACATTAAATACAACACTGGGCTTGGAATGATAGTTAGACAACTGTTCAGCTTGCTCTAGATGTTTTTTAGGGAGTATATTTTGTTGTACAAATAACTTTTGTTTTAACACCTACCGTGCCAATCAGTCACAGTATGCACAATGCATATTTAATGGAAAAAGTAATGGCATATAATCgtactgtatgtatttaagaCTGTTACATTTTGGGGTAAGATGCAGAATAAGAAAAGCCTTGGTGTGAGATCTGAGCTATTGTTGCCAGTTTGAAGTAGTTGCTTGAGCATTTATTGTTCTAGTATTGTACTTTATCAAATGAGGACAATTTTGTACAGATTTTATTCTACTTTGTATTGGTAGTTATGTTCAATGTTTATGCTGGGTTAGCAGAGGGTGACATTGGTCACAACAGATACAGAGCTCAGACTTTCAGAGTCAAATTAAAATGTAGATGCATTTATGACCCAAATCCAGTTCATAATAAAGTTTTTCCTTGTCCTCTTGAGATTGATTATTTTGTAATTAATTAGTACAGTAGTTTTATATACTCTCCCATGGGTCAGCAGAACCTTTTCAAACTCCAGTAAAGCAAGTAGGGGGAAAATGTTCATACAAAGTAAAACACCTGCTTTTTGTGAGTTTCTCCTTAAATCCAAGACTAATAATAAAATCATTGTATTATG
>XM_021606035.2
CCTACAACAGGTCTTGCACCAGGGCCCCGGTCAAATTGAGGGTGTAGTGTATTAGTACGGAGTGGAAATCCAATAGCTTTTTAAACGTCGACGCGGCCCGTTTTCCCGTCTTTATGTGGCACCATCTTCAAGTAAAACGCGTTCACTGAGGTGTGAAGAACGGGTCCGCGTTCCACTAGTCACCAGTAgtgttaactcctcctccacaaaTCAGTGGCTTGCGAGGGCTAGCTCTACTAGTACGCTTTAGCGTCTTTTTCCACATAGATAGTTGCGAAAAACAACAGCAGTTATGTTTACCCTCTCCGAGTTTATGGTAATTGCAGCTATGTTGTCCGCAACAGCGTCAGGTTATTTTGTAAGCATAGACGCTCATGCAGAAGAATGTTTATTTGAACGAGTCAACTCTGGTACCAAGATGGGCCTTATGTTTGAGGTGGCCGAAGGCGGTTTCCTTGACATCGATGTGGAGATCACGGGTCCAGATGGGAAGCAGATTTATAAAGGAGACAGAGAATCCAGTGGAAAGTACTCTGTGGCTGCCCATATGGATGGCACATACAAGTTCTGCTTTAGCAATAAGATGTCCACCATGACGCCCAAGATTGTCATGTTTACCATTGACATCGGAGAGGCCCCCAAGGGAGACGGCATGGAGACGGAAGCCCACCAGAACAAGCTGGAGGAGATGATTAATGAGCTAGCAGTTGCCATGACGGCAGTAAAACACGAACAGGAATACATGGAGGTCCGAGAGAGAATACACAGAGCAATTAATGACAACACAAACAGCCGAGTGGTGCTTTGGTCCTTCTTTGAAGCTCTTGTGTTGGTAGCCATGACCCTGGGACAGATCTACTACCTGAAGAGATTTTTCGAGGTGCGGAGAGTTGTGTAAAACATGGCTTTTTTTCCAACTCCAACGTGAGTCATCAATAACTTGAACCATTAGCCGCACCATACTACAAAGTTGGAAATCAAACAACCTCTGAAAAGCCTTTTCCTTATCCAATCTCATGTCTGTTTTCCTCTTCTCGCACTTCAGGCCATGGTACAATGTATGTTTTTCCAATCGAGGAGAACTGTCTTTGCATTGACTCCTCAGACTTTGATATCAATAGCACTGAAGAGGGTATTATACATTTTTGATCAAGAAGAGTATTTATGCATTCAAACCCACTGCCCGAAAACTATGCCAGGAGGAGGTTGTGCACACATTAAATACAACACTGGGCTTGGAATGATAGTTAGACAACTGTTCAGCTTGCTCTAGATGTTTTTTAGGGAGTATATTTTGTTGTACAAATAACTTTTGTTTTAACACCTACCGTGCCAATCAGTCACAGTATGCACAATGCATATTTAATGGAAAAAGTAATGGCATATAATCgtactgtatgtatttaagaCTGTTACATTTTGGGGTAAGATGCAGAATAAGAAAAGCCTTGGTGTGAGATCTGAGCTATTGTTGCCAGTTTGAAGTAGTTGCTTGAGCATTTATTGTTCTAGTATTGTACTTTATCAAATGAGGACAATTTTGTACAGATTTTATTCTACTTTGTATTGGTAGTTATGTTCAATGTTTATGCTGGGTTAGCAGAGGGTGACATTGGTCACAACAGATACAGAGCTCAGACTTTCAGAGTCAAATTAAAATGTAGATGCATTTATGACCCAAATCCAGTTCATAATAAAGTTTTTCCTTGTCCTCTTGAGATTGATTATTTTGTAATTAATTAGTACAGTAGTTTTATATACTCTCCCATGGGTCAGCAGAACCTTTTCAAACTCCAGTAAAGCAAGTAGGGGGAAAATGTTCATACAAAGTAAAACACCTGCTTTTTGTGAGTTTCTCCTTAAATCCAAGACTAATAATAAAATCATTGTATTATGTCTTGACTCACTATGGGTTTAATGTTGTTAGTGATATGCATATTGAAAGGTGACTTGTTAATATCTGAATTAAATGAATCCATTTGATGGGtgtttattc

Function

symbol description
tmed2 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

NR:

description
transmembrane emp24 domain-containing protein 2-like isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606034.2 False 1820 mRNA 0.42 6 29589480 29594467
XM_021606033.2 False 1936 mRNA 0.42 5 29589485 29594467
XM_021606036.2 False 1779 mRNA 0.42 5 29589500 29594467
XM_021606035.2 True 1996 mRNA 0.41 4 29589504 29594567

Neighbor

gene id symbol gene type direction distance location
LOC110525686 LOC106585293 coding upstream 2620 29576031 ~ 29586860 (+)
trnaa-ugc-16 NA coding upstream 24278 29565127 ~ 29565202 (+)
LOC110525680 LOC106585298 coding upstream 182470 29403750 ~ 29407010 (+)
LOC110525677 NA coding upstream 1026156 28556805 ~ 28563758 (+)
tgoln2 LOC106585618 coding upstream 1037319 28543021 ~ 28552161 (+)
gtf2h3 gtf2h3 coding downstream 3491 29598058 ~ 29602770 (+)
LOC110526542 NA coding downstream 13166 29607733 ~ 29609559 (+)
psmd9 psmd9 coding downstream 21943 29616510 ~ 29621427 (+)
LOC110525691 LOC106585288 coding downstream 43227 29637794 ~ 29646752 (+)
LOC110525692 LOC106585286 coding downstream 57952 29652519 ~ 29692486 (+)
G493749 NA non-coding upstream 56770 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 59272 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 118463 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 119519 29469734 ~ 29469961 (+)
G493743 NA non-coding upstream 121710 29467532 ~ 29467770 (+)
G493835 NA non-coding downstream 17694 29612261 ~ 29612480 (+)
G493847 NA non-coding downstream 31382 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 40350 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 50709 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 73292 29667859 ~ 29668146 (+)
G493450 NA other upstream 598746 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1216288 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1797910 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2046485 27488557 ~ 27543022 (+)
G489447 NA other upstream 3905169 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 277445 29871980 ~ 29880651 (+)
G494065 NA other downstream 490017 30084584 ~ 30129769 (+)
G494946 NA other downstream 727455 30322022 ~ 30344847 (+)
G494943 NA other downstream 841395 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 923409 30517976 ~ 30523383 (+)

Expression


Co-expression Network