LOC110526542


Basic Information

Item Value
gene id LOC110526542
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29607733 ~ 29609559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110526542
ATGTCACAAAAATTTAACATTGACAAGTCTTTAAACTGGGTCACCCCCcacatactgagactgccatttCCTGATGAGAGGGCTGAGGTTGTCAGTGATCCCTTTCTGCCTGCTATAACAgCCATTATTGAGATGGATGCCAAGCGAGCACAACAGGACAAGTTTACATGCGTATGGAAGTGCAGTCAGAATGTCTTCCAGGCTCTCTCCACCTCCAATAGTGAGCCAGCAAATGCTGACAACTTCCTGTCTGGCCTGATTTACCCACCCCGGCTTCACTCTAACATGCAATATGTGATCTACTTGGGCCTCCCTCACAGCCTCATGGCAGGAGAGTTTGGCTACTACTTCACCAATTTGGTTTGCGCAGTGGCCTTCATTGAGAAGCTGGATGGGCCAGCACTCAATCTTATCCCAGAGGAGTTCTATTCTGGGTCGCCGTGCTCCCTCCAAGAGGGGAAGTGAGAGGCAAAAGATGGCCCAAGGGCAGACAGAAGAAGGTGGACCAAGGAATGAACTCCCTCAAAGAGCAGCTACAGCCGTAGGTACAGTCAGTCCAGGCACAGGTAGGGTGAGGTAACAACCCAGTCTGCTCTGGCACAAGAACAAATTAAAACCCAGTCAGAGTTTTTGCAAAGCTATTCTGTCTCTACTCTTGCACAGGCAGATGATGTCAAAGACCAGTCAGTGCTATTTTTAGAGGGTCAAGAGTCCAACAACAACACTTGTCTAACGGAGACAGAGTGTTAGCCATATTAAGACTGGGGTACAGTGATCAACCCCTTGACCCTGGTTCTTAATGCTTGTGTGAGCTTTGTGGAGTAAATATTGGTGAGTTACATGTGATTGACAACAATAAGTATTTCTGTAGGACTATAGGAAGCAGCTTAATTGATAACAGAGTCACCAAATAATGGCACAATTTTTTAGTTTGGTGGGATCCTCAAAGACAAACAGACCTCAACATTCCTTGATGCCAACTTTGGACATAAAATGCACAACCTGATGGCAAGTGCTGATCTTGGAACCATTGTTACCACAGGCAATTATTTCTGCTATTTGGTTTCACAGATCACAAAGAGCAGTCGTCAATGTTTACATTCTTGACCACGTTTTTAGGTTCTCTTATTCTTTTGCACAAGTCACTTTCCTAATTACGAGATATGTGCTCTTATATGCTGTCAGAAAAAAAGCTATGTCTCGGACCCTGACGTTTGTCGAATATCAGGACAGTAGGAAAGTATTTTTGTAA

Function

NR:

description
rab5 GDP/GTP exchange factor-like isoform X1

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110526542 True 1252 mRNA 0.45 4 29607733 29609559

Neighbor

gene id symbol gene type direction distance location
gtf2h3 gtf2h3 coding upstream 4963 29598058 ~ 29602770 (+)
LOC110525687 tmed2 coding upstream 13166 29589480 ~ 29594567 (+)
LOC110525686 LOC106585293 coding upstream 20873 29576031 ~ 29586860 (+)
trnaa-ugc-16 NA coding upstream 42531 29565127 ~ 29565202 (+)
LOC110525680 LOC106585298 coding upstream 200723 29403750 ~ 29407010 (+)
psmd9 psmd9 coding downstream 6951 29616510 ~ 29621427 (+)
LOC110525691 LOC106585288 coding downstream 28235 29637794 ~ 29646752 (+)
LOC110525692 LOC106585286 coding downstream 42960 29652519 ~ 29692486 (+)
LOC110526646 NA coding downstream 94536 29704095 ~ 29705963 (+)
LOC110525698 LOC106585278 coding downstream 203053 29812612 ~ 29844159 (+)
G493749 NA non-coding upstream 75023 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 77525 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 136716 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 137772 29469734 ~ 29469961 (+)
G493743 NA non-coding upstream 139963 29467532 ~ 29467770 (+)
G493835 NA non-coding downstream 2702 29612261 ~ 29612480 (+)
G493847 NA non-coding downstream 16390 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 25358 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 35717 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 58300 29667859 ~ 29668146 (+)
G493450 NA other upstream 616999 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1234541 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1816163 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2064738 27488557 ~ 27543022 (+)
G489447 NA other upstream 3923422 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 262453 29871980 ~ 29880651 (+)
G494065 NA other downstream 475025 30084584 ~ 30129769 (+)
G494946 NA other downstream 712463 30322022 ~ 30344847 (+)
G494943 NA other downstream 826403 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 908417 30517976 ~ 30523383 (+)

Expression


Co-expression Network