psmd9 (psmd9)


Basic Information

Item Value
gene id psmd9
gene name psmd9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29616510 ~ 29621427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606038.2
ccaaccgccgataAACCCCACCGAAGAAGAAGAATAAACCGGAAATAGCAACCGGGCCTAAGTATTTTAACTTGTCTGACTTTTTTTGTTATTCACCGTTTGGTAGTTGTCGTTATTGAGTTTCCGGACGAGAGAGAATCATGAAGATGACGGAGGAAAACAACGATGGAAATTCGACAATAACAATGGAAGATGTCCAAAGTCTTATAAAAAAGAAAGACACTATTGAAGAACAAATTAAAGCTTACTACGACGTTTTGGAAGATCAAGAGGTTGGAATGGAAGGTCCTTTGGTTGATGCAGAGGGATTCCCTCGCGCAGATGTTAATGTGTACCAGATCAGAACAGCAAGGCACACTATTTCTTGTCTACAGAATGATCACAAAGCCATCATGGTGGAAATCGAGGAGGCCCTGCACAGGCTGCATGCTCTAGAGAAGGCGAAGCGCGAGCAGGACCAGGCAGAATCCCAGACTGAGTCCATGGAGCAGGAGGTCACCCTGCCCTCTCCCTTTGCCCGTGTGGATGCTGTCTCACAAGGCTCCCCTGCCTGTCAGGCTGGCTTGCGAATTAGTGATGAAATCATAGCATTTGGATCCATCAACACAGGGAACTTCCAGAACCTGCAGAATATTGCCTCAGTGGTTCAGCATAGTGAAGGGAGACCATTAAACGTTACAGTGATTCGAAATGGCCAGAAGACCCAAATGGGACTTACCCCACAGCGGTGGTCGGGCAGAGGTTTACTGGGATGTAACATTGTGCCCCTCCACAGATGATAAGGACCATATGACCAGCAAGATCGTAAGGGTTCAACTTTAACACCAACCTTACTGTTATGCCACTGGATGGCTATGAGTAAAGGAATTGTTTGAGCCCATAAATTAGAAGATTGACATTTAACTGATTCAATGTCAATTTAATGTTCTAATAAAAACATATTAACATTC

Function

symbol description
psmd9 Predicted to be involved in proteasome regulatory particle assembly. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMD9 (proteasome 26S subunit, non-ATPase 9).

NR:

description
26S proteasome non-ATPase regulatory subunit 9-like

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06693 PSMD9, RPN4; 26S proteasome regulatory subunit N4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606038.2 True 950 mRNA 0.45 6 29616510 29621427

Neighbor

gene id symbol gene type direction distance location
LOC110526542 NA coding upstream 6951 29607733 ~ 29609559 (+)
gtf2h3 gtf2h3 coding upstream 13740 29598058 ~ 29602770 (+)
LOC110525687 tmed2 coding upstream 21943 29589480 ~ 29594567 (+)
LOC110525686 LOC106585293 coding upstream 29650 29576031 ~ 29586860 (+)
trnaa-ugc-16 NA coding upstream 51308 29565127 ~ 29565202 (+)
LOC110525691 LOC106585288 coding downstream 16367 29637794 ~ 29646752 (+)
LOC110525692 LOC106585286 coding downstream 31092 29652519 ~ 29692486 (+)
LOC110526646 NA coding downstream 82668 29704095 ~ 29705963 (+)
LOC110525698 LOC106585278 coding downstream 191185 29812612 ~ 29844159 (+)
LOC110525700 rilpl2 coding downstream 235301 29856728 ~ 29863079 (+)
G493835 NA non-coding upstream 4030 29612261 ~ 29612480 (+)
G493749 NA non-coding upstream 83800 29472037 ~ 29532710 (+)
G493779 NA non-coding upstream 86302 29526792 ~ 29530208 (+)
G493747 NA non-coding upstream 145493 29470739 ~ 29471017 (+)
G493746 LOC106585296 non-coding upstream 146549 29469734 ~ 29469961 (+)
G493847 NA non-coding downstream 4522 29625949 ~ 29626207 (+)
G493853 LOC106581475 non-coding downstream 13490 29634917 ~ 29635374 (+)
G493858 NA non-coding downstream 23849 29645276 ~ 29645533 (+)
G493876 NA non-coding downstream 46432 29667859 ~ 29668146 (+)
G493877 NA non-coding downstream 50632 29672059 ~ 29672335 (+)
G493450 NA other upstream 625776 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1243318 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 1824940 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2073515 27488557 ~ 27543022 (+)
G489447 NA other upstream 3932199 25683686 ~ 25684311 (+)
LOC110525701 LOC106585276 other downstream 250585 29871980 ~ 29880651 (+)
G494065 NA other downstream 463157 30084584 ~ 30129769 (+)
G494946 NA other downstream 700595 30322022 ~ 30344847 (+)
G494943 NA other downstream 814535 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 896549 30517976 ~ 30523383 (+)

Expression


Co-expression Network