LOC110525693


Basic Information

Item Value
gene id LOC110525693
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29650203 ~ 29654088 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052054.1
GGCGAAGACACCATGAAGTGACCACTGTGGATTATCTGCGACTCGCGTCCATCCGACTTCTTGAAACCAATGTGAGACTCCTCCGTGTCCGAGTCATCGTCCTGCTCCTGCTTGATACTCACTGCTCATTCTCTGTGGGAGAGAGCGcaaagatgagaaggagaactGGAGGAAATCCAAGACAGCAGAATGTCAGACTgcaaggaagagaggggagaagacaggagaacatCTCGAGAGGGCAGGCCCACACAAGACAAACATGGCATATTAATCTCAAGCCAGAGGAACTAGTCCTTGCTAAACATAAAGATGCCACTTCTGACATGTCCTGTGTGTATAAATTGTAAGACACTGATATTTTCCCATCACTGAAGGCAATCATACAGACTGTGCTGACCATCCCAGTTAGCAGCTGTGAGAGATCTTTCAGTGCATTAAGACATCTACATACCTGGCTTAGGAGACCAAGATAGAATGCCCCATGACAATTGACAAGGATATTCATACTGTAATACTAACACACTTGGGAAAGAGTGAAGTCATAGTCAGGTTTGCACCTACAGTTTAATTTCTAATTTTTATGGATGGACTAATCCTAGTACTGTGTAATATAACTAGCAACCATTGTGAATATTTAGTTGGAGAATGGATTGTATGTTGGTACATGTGTGTAAAATTGTGAAGTGTTATTACTACAGGGGTGTTGGAGGGGGTGTATTTGTTTTTGTGTAATTACTTGGGTAGAAATATTGTCAAGTAGTTAATTGACCTTGGACCTTTCAACATCCACGCGATTAGGAATATACCATCTTCATAGTCATGTTATGCTTGGTTCAATAGCTATTGATGAGGAAACCGAATACCCAATATAAAACTAATTTTACCTCTGTAAGCAGGACACCACTTTTAGCCCCAGAGACTCAAAACCACAAACAGATCGACCAAAGGTATGGATCCACTTTCTCCAAGAATCATACTCCCATTGGGCCAGAGTCTTCCTGATCATTGGAGTGAGGCTCAGAAGCCTTCACACCACCTGACGACCCAGGTTTTTTCTCACTTTCGTCAGGATCAATTTCAAGTTCACTGTCCGTTGACAGCTCAGGGTCTTCAGGCACGTAACATGCATTTTGTCTCTCCCGTTtcctaccccattgaagttgaacaTTTAAatgggttaggtaagggttaatggcagggggcttgcctgttttgcatgctattttgacattaatacatgtcacatcaggttgcaaacaatgtaaaaaaaaatatatagatacaCCGAGTTAATAAa
>TU561849
TTCGGTAGCTGGGTATGGACAACGCATATTTTTAACACAGTCCAATATGTAGCCAATTCAATTAATGCCACCGCAGTAAAGCAATGCTTAGAAGCTAGGTAACTATCTAGTTAGCACACGTTCAATTGATTGACGACGAGAACCAACCAATACACAAACCTGTATGCAAGGGTCATGCATTCGAAAAGTTTTGTCAACGACGCGTCAATGGAGAGATGTGATGTACACTTCTTCCCGAAGTGATACGTCCGACAGGAAATCCAAGACAGCAGAATGTCAGACTgcaaggaagagaggggagaagacaggagaacatCTCGAGAGGGCAGGCCCACACAAGACAAACATGGCATATTAATCTCAAGCCAGAGGAACTAGTCCTTGCTAAACATAAAGATGCCACTTCTGACATGTCCTGTGTGTATAAATTGTAAGACACTGATATTTTCCCATCACTGAAGGCAATCATACAGACTGTGCTGACCATCCCAGTTAGCAGCTGTGAGAGATCTTTCAGTGCATTAAGACATCTACATACCTGGCTTAGGAGACCAAGATAGAATGCCCCATGACAATTGACAAGGATATTCATACTGTAATACTAACACACTTGGGAAAGAGTGAAGTCATAGTCAGGTTTGCACCTACAGTTTAATTTCTAATTTTTATGGATGGACTAATCCTAGTACTGTGTAATATAACTAGCAACCATTGTGAATATTTAGTTGGAGAATGGATTGTATGTTGGTACATGTGTGTAAAATTGTGAAGTGTTATTACTACAGGGGTGTTGGAGGGGGTGTATTTGTTTTTGTGTAATTACTTGGGTAGAAATATTGTCAAGTAGTTAATTGACCTTGGACCTTTCAACATCCACGCGATTAGGAATATACCATCTTCATAGTCATGTTATGCTTGGTTCAATAGCTATTGATGAGGAAACCGAATACCCAATATAAAACTAATTTTACCTCTGTAAGCAGGACACCACTTTTAGCCCCAGAGACTCAAAACCACAAACAGATCGACCAAAGGTATGGATCCACTTTCTCCAAGAATCATACTCCCATTGGGCCAGAGTCTTCCTGATCATTGGAGTGAGGCTCAGAAGCCTTCACACCACCTGACGACCCAGGTTTTTTCTCACTTTCGTCAGGATCAATTTCAAGTTCACTGTCCGTTGACAGCTCAGGGTCTTCAGGCACGTAACATGCATTTTGTCTCTCCCGTTtcctaccccattgaagttgaacaTTTAAatgggt
>TU561850
TTCGGTAGCTGGGTATGGACAACGCATATTTTTAACACAGTCCAATATGTAGCCAATTCAATTAATGCCACCGCAGTAAAGCAATGCTTAGAAGCTAGGCATTCTCTGTGGGAGAGAGCGcaaagatgagaaggagaactGGAGGAAATCCAAGACAGCAGAATGTCAGACTgcaaggaagagaggggagaagacaggagaacatCTCGAGAGGGCAGGCCCACACAAGACAAACATGGCATATTAATCTCAAGCCAGAGGAACTAGTCCTTGCTAAACATAAAGATGCCACTTCTGACATGTCCTGTGTGTATAAATTGTAAGACACTGATATTTTCCCATCACTGAAGGCAATCATACAGACTGTGCTGACCATCCCAGTTAGCAGCTGTGAGAGATCTTTCAGTGCATTAAGACATCTACATACCTGGCTTAGGAGACCAAGATAGAATGCCCCATGACAATTGACAAGGATATTCATACTGTAATACTAACACACTTGGGAAAGAGTGAAGTCATAGTCAGGTTTGCACCTACAGTTTAATTTCTAATTTTTATGGATGGACTAATCCTAGTACTGTGTAATATAACTAGCAACCATTGTGAATATTTAGTTGGAGAATGGATTGTATGTTGGTACATGTGTGTAAAATTGTGAAGTGTTATTACTACAGGGGTGTTGGAGGGGGTGTATTTGTTTTTGTGTAATTACTTGGGTAGAAATATTGTCAAGTAGTTAATTGACCTTGGACCTTTCAACATCCACGCGATTAGGAATATACCATCTTCATAGTCATGTTATGCTTGGTTCAATAGCTATTGATGAGGAAACCGAATACCCAATATAAAACTAATTTTACCTCTGTAAGCAGGACACCACTTTTAGCCCCAGAGACTCAAAACCACAAACAGATCGACCAAAGGTATGGATCCACTTTCTCCAAGAATCATACTCCCATTGGGCCAGAGTCTTCCTGATCATTGGAGTGAGGCTCAGAAGCCTTCACACCACCTGACGACCCAGGTTTTTTCTCACTTTCGTCAGGATCAATTTCAAGTTCACTGTCCGTTGACAGCTCAGGGTCTTCAGGCACGTAACATGCATTTTGTCTCTCCCGTTtcctaccccattgaagttgaacaTTTAAatgggt

Function

NR:

description
zinc finger MYM-type protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052054.1 False 1300 mRNA 0.42 3 29650203 29653776
TU561849 False 1265 lncRNA 0.42 2 29650322 29654088
TU561850 True 1154 lncRNA 0.42 3 29650322 29654088

Neighbor

gene id symbol gene type direction distance location
LOC110526522 LOC106585290 coding downstream 53394 29595416 ~ 29596809 (-)
LOC110525685 LOC106585294 coding downstream 74605 29526783 ~ 29575598 (-)
LOC110525684 LOC106585295 coding downstream 129223 29502192 ~ 29520980 (-)
LOC110525681 hectd4 coding downstream 166670 29411204 ~ 29483533 (-)
LOC110525683 NA coding downstream 234861 29414761 ~ 29415342 (-)
LOC110525694 LOC106585282 coding upstream 52283 29706059 ~ 29754403 (-)
LOC110525696 LOC106585281 coding upstream 101126 29754902 ~ 29760372 (-)
LOC110525697 rsrc2 coding upstream 116148 29769924 ~ 29786928 (-)
LOC118965073 NA coding upstream 144733 29798141 ~ 29811783 (-)
kmt5ab kmt5a coding upstream 209422 29863198 ~ 29870407 (-)
G494517 NA non-coding downstream 13237 29636636 ~ 29636966 (-)
G494516 NA non-coding downstream 13677 29636281 ~ 29636526 (-)
G494515 NA non-coding downstream 14721 29635128 ~ 29635482 (-)
G494511 NA non-coding downstream 17764 29632237 ~ 29632439 (-)
G494507 NA non-coding downstream 21416 29628452 ~ 29628787 (-)
G494530 NA non-coding upstream 4573 29658349 ~ 29658624 (-)
G494537 NA non-coding upstream 13506 29667282 ~ 29667537 (-)
G494540 LOC106585286 non-coding upstream 19900 29673676 ~ 29674225 (-)
G494544 NA non-coding upstream 23726 29677502 ~ 29678117 (-)
G494546 NA non-coding upstream 26306 29680082 ~ 29680686 (-)
G494389 LOC106585296 other downstream 234889 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1814901 27827231 ~ 27885634 (-)
LOC110525653 NA other downstream 1913225 27734995 ~ 27737024 (-)
G494542 NA other upstream 21547 29675323 ~ 29675573 (-)
LOC110525714 LOC106585251 other upstream 872910 30526034 ~ 30527686 (-)
G495554 NA other upstream 891626 30545402 ~ 30549450 (-)
G495560 NA other upstream 921342 30575118 ~ 30575573 (-)
G496772 NA other upstream 2007617 31661393 ~ 31661618 (-)

Expression


Co-expression Network