LOC118965073


Basic Information

Item Value
gene id LOC118965073
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29798141 ~ 29811783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052406.1
tgaataccagattgcccctttaaaaggCTCGCCCTGCAGGACTATTCAAAGATCTTATCTGTCAGGAAGATATCCGTTTGTCTccgtggatggtttgtcctctgacaaatatGTGgaggggtgcatcacgtCTTGCCAGGATTTCTTCGCTATGCTCGACTTGAGTGGGTTAAGTTACTGAcctgatcttcctgtccggtctTGCGCCCTCTCGGGCTCATGCgttgggggagatcttcgtgggctatactcagccttgtctcaggacctgagccgtaggaccatgcctcaggactacctggcatgatgactccttgctgtcccca
>TU561903
ccccagtctacctggccgtgctgctgctccagtttcaactgatctgcctagaaggccagcatcgcggagtcgcctcttcactgttgacgttgagactggtgttttgcgggtactatttaatgaagctgccagttgaggacttgtggggcatctgtttctcaaactagatactctaatgtacttatcctcttgctcagttgtgcaccggggcctcccactcctctttctattcggGTTAGAGCCAGTtagcgctgttctgtgaagggaggagtacacagcgttgtatgagatagtctaaagaaggccagttttattttttctgtaatcagaacaacagttttcaagtTAATTTTCTTGGTTGTTGGCGCATTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052406.1 False 326 mRNA 0.52 3 29798509 29811783
TU561903 True 373 lncRNA 0.47 1 29798141 29798513

Neighbor

gene id symbol gene type direction distance location
LOC110525697 rsrc2 coding downstream 11581 29769924 ~ 29786928 (-)
LOC110525696 LOC106585281 coding downstream 38137 29754902 ~ 29760372 (-)
LOC110525694 LOC106585282 coding downstream 44106 29706059 ~ 29754403 (-)
LOC110525693 NA coding downstream 144733 29650203 ~ 29654088 (-)
LOC110526522 LOC106585290 coding downstream 201700 29595416 ~ 29596809 (-)
kmt5ab kmt5a coding upstream 51415 29863198 ~ 29870407 (-)
LOC118964857 NA coding upstream 158284 29970067 ~ 29974882 (-)
LOC110525703 LOC106585270 coding upstream 164375 29976158 ~ 29980778 (-)
LOC110525706 NA coding upstream 293582 30102891 ~ 30141156 (-)
LOC110525709 LOC106585264 coding upstream 377789 30189572 ~ 30191815 (-)
G494556 NA non-coding downstream 102771 29693030 ~ 29695738 (-)
G494546 NA non-coding downstream 117823 29680082 ~ 29680686 (-)
G494544 NA non-coding downstream 120392 29677502 ~ 29678117 (-)
G494540 LOC106585286 non-coding downstream 124284 29673676 ~ 29674225 (-)
G494537 NA non-coding downstream 130972 29667282 ~ 29667537 (-)
G494621 NA non-coding upstream 31000 29842783 ~ 29848905 (-)
G494624 NA non-coding upstream 38546 29850329 ~ 29850535 (-)
G494645 NA non-coding upstream 88927 29900710 ~ 29925721 (-)
G494691 NA non-coding upstream 133077 29944860 ~ 29945081 (-)
G494692 NA non-coding upstream 133872 29945655 ~ 29945863 (-)
G494542 NA other downstream 122936 29675323 ~ 29675573 (-)
LOC110525684 LOC106585295 other downstream 295118 29502192 ~ 29520980 (-)
LOC110525681 hectd4 other downstream 315163 29411204 ~ 29483533 (-)
G494389 LOC106585296 other downstream 383195 29411215 ~ 29415314 (-)
LOC110525655 LOC106585601 other downstream 1963207 27827231 ~ 27885634 (-)
LOC110525714 LOC106585251 other upstream 714903 30526034 ~ 30527686 (-)
G495554 NA other upstream 733619 30545402 ~ 30549450 (-)
G495560 NA other upstream 763335 30575118 ~ 30575573 (-)
G496772 NA other upstream 1849610 31661393 ~ 31661618 (-)
G496777 NA other upstream 1859195 31670978 ~ 31671927 (-)

Expression


Co-expression Network