LOC110525701 (LOC106585276)


Basic Information

Item Value
gene id LOC110525701
gene name LOC106585276
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 29871980 ~ 29880651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606068.2
GGCCATATTTGCCGGTGCTGCTCTGCTGTAAACAAAAAGTgtctgagggagacagagacgcTTCATTGGATTTTAGGACGATTTTTAGTTCTTTAATTTATAATGTCTTTAGGAATGTCTTACAAGCCCAACCTCCATCAGCATGTTCTCGGAACTTCCGTGAACCAAGTTGCTGTTGTTCACTCTACTTCAACAAGCATATCAACACTGCAATCTTACAGGCCAGTAGTGAATGACTATGGACCACCATCTTTCAGCTTTTCACAGAGTTCAAGTGGAAGTCAAGTGCCTCAGAGTAAATATGCAGAACTGCTATCCATTATTGAAGAGCTTGGGAAGGAGATAAGACCAACTTATGCTGGGAGCAAAAGTGCCATGGAGAGACTAAAGCGAGGTATCATTCATGCCAGGGGGCTTGTACGTGAATGCTtggcagaaacagagagaaatgcAAGATCCTAACAGGCAAAGTGCAATGTTATTGAATTGGACCAACTCTCCAGACTGAAGATCTACAAGACGAAGCTCTTAGTCAATACTTTTATTGGACCAATAAAAACAAaacttttactttattttttaactGCGATGGCACATTGGGCTTTGACCAAAAAAGTGACCTATGAGCTGTACTTGACATGAATTTCCTGGTTTTATTTGTGCTCCCCTTGGAAATGCCTAATTTCAATATtgtatgaataaaaaaaaaaatgagaacAAACAAAATGCATGCTATGTAGCAATGCCCCTATCATTTAATGAAACGTGCATGGATTTTATGTGAGTGTAGGGCATTTTGACAATGGATGGGTTCTACCTATAGCTAATATACTTAGTAGCTACTAACTATTACTATAGTAAATATAACATATACTATAATAGTTACAGTATATTTTTACTATAGTGGCTATAGCATCTTTTAAACATATTTAAGCACGAGTTACAGCAAAAGGGATAGGTGTTTTAACATGTATTTACATACACTAGCGTTGCTTTCAATTGTATTTGGTTGCACAAAAACAGTCTGTGGGAAGCCAGAAGTTATCCATTTCATGTTACTGTGTCGGTGGGCAGGACTGTTGGTAAATATGGCGGGGGTATTTTGAGACCCCCAAATGACCAACAGTCCTGTCCACCGGCACAAGAAGTCTGGCTTCCCACGGACAATTGTTGTGCAACCCAATACAATAGCGTTGCTTTCAAGTGTATGTACAAAAGGAATAGTTCCAACCACACTTAAACACACCACATTATGGATAAACTATTGTACTAAAGTCATTGTTTGCATCTTTGTATTTATTGCCCAGTGTAATACAACGTATTTCCATTAAAATGATTGAAAATA
>TU561220
CAAAAAGTgtctgagggagacagagacgcTTCATTGGATTTTAGGACGATTTTTAGTTCTTTAATTTATAATGTCTTTAGGAATGTCTTACAAGCCCAACCTCCATCAGCATGTTCTCGGAACTTCCGTGAACCAAGTTGCTGTTGTTCACTCTACTTCAACAAGCATATCAACACTGCAATCTTACAGGCCAGTAGTGAATGACTATGGACCACCATCTTTCAGCTTTTCACAGAGTTCAAGTGGAAGTCAAGTGCCTCAGAGTAAATATGCAGAACTGCTATCCATTATTGAAGAGCTTGGGAAGGAGATAAGACCAACTTATGCTGGGAGCAAAAGTGCCATGGAGAGACTAAAGCGAGGTATCATTCATGCCAGGGGGCTTGTACGTGAATGCTtggcagaaacagagagaaatgcAAGATCCTAACAGGCAAAGTGCAATGTTATTGAATTGGACCAACTCTCCAGACTGAAGATCTACAAGACGAAGCTCTTAGTCAATACTTTTATTGGACCAATAAAAACAAaacttttactttattttttaactGCGATGGCACATTGGGCTTTGACCAAAAAAGTGACCTATGAGCTGTACTTGACATGAATTTCCTGGTTTTATTTGTGCTCCCCTTGGAAATGCCTAATTTCAATATtgtatgaataaaaaaaaaaatgagaacAAACAAAATGCATGCTATGTAGCAATGCCCCTATCATTTAATGAAACGTGCATGGATTTTATGTGAGTGTAGGGCATTTTGACAATGGATGGGTTCTACCTATAGCTAATATACTTAGTAGCTACTAACTATTACTATAGTAAATATAACATATACTATAATAGTTACAGTATATTTTTACTATAGTGGCTATAGCATCTTTTAAACATATTTAAGCACGAGTTACAGCAAAAGGGATAGGTGTTTTAACATGTATTTACATACACTAGCGTTGCTTTCAATTGTATTTGGTTGCACAAAAACAGTCTGTGGGAAGCCAGAAGTTATCCATTTCATGTTACTGTGTCGGTGGGCAGGACTGTTGGTAAATATGGCGGGGGTATTTTGAGACCCCCAAATGACCAACAGTCCTGTCCACCGGCACAAGAAGTCTGGCTTCCCACGGACAATTGTTGTGCAACCCAATACAATAGCGTTGCTTTCAAGTGTATGTACAAAAGGAATAGTTCCAACCACACTTAAACACACCACATTATGGATAAACTATTGTACTAAAGTCATTGTTTGCATCTTTGTATTTATTGCCCAGTGTAATACAACGTATTTCCATTAAAATGATTGAAAA

Function

NR:

description
PREDICTED: cyclin-dependent kinase 2-associated protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606068.2 False 1345 mRNA 0.38 4 29871980 29880651
TU561220 True 1311 TUCP 0.38 4 29872012 29880649
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525700 rilpl2 coding upstream 8901 29856728 ~ 29863079 (+)
LOC110525698 LOC106585278 coding upstream 27821 29812612 ~ 29844159 (+)
LOC110526646 NA coding upstream 166017 29704095 ~ 29705963 (+)
LOC110525692 LOC106585286 coding upstream 179494 29652519 ~ 29692486 (+)
LOC110525691 LOC106585288 coding upstream 225228 29637794 ~ 29646752 (+)
LOC110525702 LOC106585272 coding downstream 3705 29884356 ~ 29963247 (+)
LOC110525705 LOC101160416 coding downstream 116141 29996792 ~ 30002943 (+)
LOC110525704 LOC106585268 coding downstream 122424 30003075 ~ 30015424 (+)
LOC110526722 LOC106585267 coding downstream 136906 30017557 ~ 30103886 (+)
LOC110525707 LOC106585266 coding downstream 233247 30113898 ~ 30154830 (+)
G493961 NA non-coding upstream 318 29871456 ~ 29871662 (+)
G493960 NA non-coding upstream 581 29871006 ~ 29871399 (+)
G493956 NA non-coding upstream 5792 29865648 ~ 29866188 (+)
G493943 NA non-coding upstream 22318 29849426 ~ 29849662 (+)
G493921 NA non-coding upstream 69138 29802557 ~ 29802842 (+)
G494014 NA non-coding downstream 70084 29950735 ~ 29950935 (+)
G494015 NA non-coding downstream 78651 29959302 ~ 29959618 (+)
G493946 NA non-coding downstream 82981 29963632 ~ 29968191 (+)
G494018 NA non-coding downstream 92895 29973546 ~ 29974117 (+)
G493450 NA other upstream 881246 28989430 ~ 28990734 (+)
LOC110525669 NA other upstream 1498788 28370701 ~ 28373267 (+)
LOC110525650 LOC106585598 other upstream 2080410 27738953 ~ 27793944 (+)
LOC110525642 bin3 other upstream 2328985 27488557 ~ 27543022 (+)
G489447 NA other upstream 4187669 25683686 ~ 25684311 (+)
G494065 NA other downstream 203933 30084584 ~ 30129769 (+)
G494946 NA other downstream 441371 30322022 ~ 30344847 (+)
G494943 NA other downstream 555311 30435962 ~ 30436685 (+)
4ebp2 LOC106585258 other downstream 637325 30517976 ~ 30523383 (+)
G495076 LOC106585256 other downstream 695454 30576105 ~ 30576756 (+)

Expression

LOC110525701(LOC106585276) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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LOC110525701(LOC106585276) Expression in each Bioproject

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LOC110525701(LOC106585276) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network